Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Reverse (-)

68159036 .. 68161855

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G045020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGAAAATGTAACAAGGAATGGATAGATGAGGACCAGGCTACTGGTGTTGTTTCCAAGTCCAAGCATGTGCCTGGTCTTAAGATTCCAAATGTTGTGTTGGGTGACATTGTGATTTCTGTTGAGATGGCGGCAAGGCAAGCAGAGCAAAGAGGCCACACACTTCTTGATGAGATGCGCCTTCTCATGGTCGTATTAGCTGAAGCTTTGATTTGTGTTCTTCTACATGAGATAACATTCTTCATTGAGCTTTTTGGGCCTGCAACGAAGTTCGAAGCCTTATTGGTTAATAACAGGCTAAAGTGCCTCCTAAGGTACACGTTTTTGCTTGGGGCTGTTGCTCACAGGAGAGTTATACTTGTGAGGTTAACAGCAAAGCCCTTCTGTTTGACTTTGGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

134

Amino Acids

15.07

Weight (kDa)

9.05

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbeY	PF02130	1 - 64	1.2e-09	Endoribonuclease YbeY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflII	CTTAAG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	318
AjnI	CCWGG	2 cut(s)	36, 73
AluBI	AGCT	3 cut(s)	200, 206, 250
AluI	AGCT	3 cut(s)	200, 206, 250
AoxI	GGCC	3 cut(s)	154, 257, 396
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	34, 257
AsuHPI	GGTGA	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	398
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	38, 75
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	38, 75
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 257
BmrFI	CCNGG	2 cut(s)	38, 75
BmsI	GCATC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	49
Bse21I	CCTNAGG	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	38, 75
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	156, 259, 398
BslI	CCNNNNNNNGG	1 cut(s)	187
BsnI	GGCC	3 cut(s)	156, 259, 398
Bsp119I	TTCGAA	1 cut(s)	273
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	3 cut(s)	156, 259, 398
BspT104I	TTCGAA	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	38, 75
BstAFI	CTTAAG	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	141, 261
BstDEI	CTNAG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 145, 256
BstNI	CCWGG	2 cut(s)	38, 75
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	36, 73
BstXI	CCANNNNNNTGG	1 cut(s)	44
Bsu36I	CCTNAGG	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	156, 259, 398
Cac8I	GCNNGC	2 cut(s)	141, 261
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	34, 257
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	68, 187, 227
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	36, 73
FaeI	CATG	3 cut(s)	71, 190, 230
FaiI	YATR	4 cut(s)	69, 188, 228, 356
FatI	CATG	3 cut(s)	67, 186, 226
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	156, 259, 398
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	71, 190, 230
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	1 cut(s)	85
HpaI	GTTAAC	1 cut(s)	369
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	318, 369
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	318, 369
HpyAV	CCTTC	2 cut(s)	191, 391
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 145, 256
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	71, 190, 230
HspAI	GCGC	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	369
LpnPI	CCDG	8 cut(s)	23, 30, 50, 60, 87, 273, 280, 331
LweI	GCATC	1 cut(s)	165
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	11, 104
MboII	GAAGA	2 cut(s)	212, 232
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
MnlI	CCTC	4 cut(s)	25, 146, 317, 357
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	3 cut(s)	81, 288, 368
Msp20I	TGGCCA	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	38, 75
MvaI	CCWGG	2 cut(s)	38, 75
MwoI	GCNNNNNNNGC	3 cut(s)	140, 145, 256
NlaIII	CATG	3 cut(s)	71, 190, 230
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	36, 73
PspGI	CCWGG	2 cut(s)	36, 73
PspPI	GGNCC	2 cut(s)	34, 257
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	81, 288, 368
SatI	GCNGC	1 cut(s)	132
Sau96I	GGNCC	2 cut(s)	34, 257
ScrFI	CCNGG	2 cut(s)	38, 75
SetI	ASST	6 cut(s)	202, 208, 252, 317, 323, 368
SfaNI	GCATC	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	36, 73
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	273
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	3 cut(s)	81, 288, 368
Tru9I	TTAA	3 cut(s)	81, 288, 368
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.