Uncharacterized protein family UPF0054
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 40 - 77 | 2.1e-12 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 191 - 341 | 1.2e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 372 - 541 | 2.1e-11 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 410 - 467 | 2.2e-06 | Leucine rich repeat |
| LRR_8 | PF13855 | 681 - 741 | 1.1e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 796 - 894 | 8.6e-09 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1326, 1398 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 957 |
| AccII | CGCG | 1 cut(s) | 2798 |
| AccIII | TCCGGA | 1 cut(s) | 1862 |
| AciI | CCGC | 6 cut(s) | 235, 500, 1719, 2282, 2798, 2946 |
| AclWI | GGATC | 5 cut(s) | 158, 1185, 1198, 1678, 2110 |
| AcuI | CTGAAG | 3 cut(s) | 1253, 2448, 2642 |
| AdeI | CACNNNGTG | 1 cut(s) | 2705 |
| AfaI | GTAC | 1 cut(s) | 475 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1693 |
| AhlI | ACTAGT | 2 cut(s) | 287, 1303 |
| Alw21I | GWGCWC | 3 cut(s) | 136, 398, 1608 |
| Alw26I | GTCTC | 9 cut(s) | 275, 455, 1621, 1921, 2044, 2368, 2447, 2582, 2747 |
| AlwI | GGATC | 5 cut(s) | 158, 1185, 1198, 1678, 2110 |
| Ama87I | CYCGRG | 1 cut(s) | 1639 |
| Aor13HI | TCCGGA | 1 cut(s) | 1862 |
| AoxI | GGCC | 2 cut(s) | 886, 1567 |
| ApeKI | GCWGC | 6 cut(s) | 204, 651, 720, 1156, 1896, 2128 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1439, 1471 |
| AseI | ATTAAT | 3 cut(s) | 348, 810, 2475 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1294, 1366, 1518, 2641 |
| AspLEI | GCGC | 1 cut(s) | 2798 |
| AspS9I | GGNCC | 4 cut(s) | 784, 887, 1568, 1761 |
| AsuHPI | GGTGA | 2 cut(s) | 2312, 2429 |
| AvaI | CYCGRG | 1 cut(s) | 1639 |
| AvaII | GGWCC | 2 cut(s) | 784, 1761 |
| BaeGI | GKGCMC | 1 cut(s) | 1488 |
| BamHI | GGATCC | 1 cut(s) | 1190 |
| BanII | GRGCYC | 2 cut(s) | 398, 1608 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 166, 198 |
| BauI | CACGAG | 1 cut(s) | 1607 |
| BbsI | GAAGAC | 2 cut(s) | 1241, 2174 |
| Bbv12I | GWGCWC | 3 cut(s) | 136, 398, 1608 |
| BbvI | GCAGC | 6 cut(s) | 191, 663, 707, 1168, 1908, 2115 |
| BccI | CCATC | 6 cut(s) | 287, 1022, 1496, 1784, 1810, 2729 |
| BciVI | GTATCC | 1 cut(s) | 2122 |
| BcoDI | GTCTC | 9 cut(s) | 275, 455, 1621, 1921, 2044, 2368, 2447, 2582, 2747 |
| BcuI | ACTAGT | 2 cut(s) | 287, 1303 |
| BfmI | CTRYAG | 2 cut(s) | 1154, 1829 |
| BfuI | GTATCC | 1 cut(s) | 2122 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1566 |
| BglII | AGATCT | 1 cut(s) | 154 |
| BisI | GCNGC | 7 cut(s) | 205, 652, 721, 1157, 1897, 2129, 2946 |
| BlsI | GCNGC | 7 cut(s) | 206, 653, 722, 1158, 1898, 2130, 2947 |
| Bme18I | GGWCC | 2 cut(s) | 784, 1761 |
| BmeT110I | CYCGRG | 1 cut(s) | 1639 |
| BmgT120I | GGNCC | 4 cut(s) | 784, 887, 1568, 1761 |
| BmiI | GGNNCC | 5 cut(s) | 889, 1192, 1270, 1342, 1570 |
| BmrI | ACTGGG | 1 cut(s) | 472 |
| BmsI | GCATC | 2 cut(s) | 80, 1168 |
| BmuI | ACTGGG | 1 cut(s) | 472 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2208 |
| BpiI | GAAGAC | 2 cut(s) | 1241, 2174 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 123, 155 |
| Bpu10I | CCTNAGC | 1 cut(s) | 647 |
| BpuEI | CTTGAG | 4 cut(s) | 412, 980, 1643, 2485 |
| Bsa29I | ATCGAT | 1 cut(s) | 2268 |
| BsaI | GGTCTC | 2 cut(s) | 275, 1621 |
| BsaJI | CCNNGG | 1 cut(s) | 309 |
| BsaWI | WCCGGW | 2 cut(s) | 1862, 2630 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2818, 2848 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1693 |
| Bse1I | ACTGG | 3 cut(s) | 244, 478, 2083 |
| Bse3DI | GCAATG | 1 cut(s) | 258 |
| BseAI | TCCGGA | 1 cut(s) | 1862 |
| BseCI | ATCGAT | 1 cut(s) | 2268 |
| BseDI | CCNNGG | 1 cut(s) | 309 |
| BseGI | GGATG | 3 cut(s) | 837, 1226, 1918 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1693 |
| BseMI | GCAATG | 1 cut(s) | 258 |
| BseNI | ACTGG | 3 cut(s) | 244, 478, 2083 |
| BseSI | GKGCMC | 1 cut(s) | 1488 |
| BseXI | GCAGC | 6 cut(s) | 191, 663, 707, 1168, 1908, 2115 |
| BsgI | GTGCAG | 3 cut(s) | 1009, 2197, 2710 |
| Bsh1236I | CGCG | 1 cut(s) | 2798 |
| BshFI | GGCC | 2 cut(s) | 888, 1569 |
| BshVI | ATCGAT | 1 cut(s) | 2268 |
| BsiHKAI | GWGCWC | 3 cut(s) | 136, 398, 1608 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1639 |
| BsiSI | CCGG | 2 cut(s) | 1863, 2631 |
| BslFI | GGGAC | 1 cut(s) | 2242 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1693 |
| BsmAI | GTCTC | 9 cut(s) | 275, 455, 1621, 1921, 2044, 2368, 2447, 2582, 2747 |
| BsmFI | GGGAC | 1 cut(s) | 2242 |
| BsmI | GAATGC | 5 cut(s) | 206, 1146, 1633, 1818, 1959 |
| BsnI | GGCC | 2 cut(s) | 888, 1569 |
| Bso31I | GGTCTC | 2 cut(s) | 275, 1621 |
| BsoBI | CYCGRG | 1 cut(s) | 1639 |
| Bsp1286I | GDGCHC | 4 cut(s) | 136, 398, 1488, 1608 |
| Bsp13I | TCCGGA | 1 cut(s) | 1862 |
| BspACI | CCGC | 6 cut(s) | 235, 500, 1719, 2282, 2798, 2946 |
| BspANI | GGCC | 2 cut(s) | 888, 1569 |
| BspDI | ATCGAT | 1 cut(s) | 2268 |
| BspEI | TCCGGA | 1 cut(s) | 1862 |
| BspFNI | CGCG | 1 cut(s) | 2798 |
| BspHI | TCATGA | 1 cut(s) | 2758 |
| BspLI | GGNNCC | 5 cut(s) | 889, 1192, 1270, 1342, 1570 |
| BspMAI | CTGCAG | 1 cut(s) | 1158 |
| BspPI | GGATC | 5 cut(s) | 158, 1185, 1198, 1678, 2110 |
| BspQI | GCTCTTC | 1 cut(s) | 2338 |
| BspTNI | GGTCTC | 2 cut(s) | 275, 1621 |
| BsrDI | GCAATG | 1 cut(s) | 258 |
| BsrI | ACTGG | 3 cut(s) | 244, 478, 2083 |
| BssECI | CCNNGG | 1 cut(s) | 309 |
| BssSI | CACGAG | 1 cut(s) | 1607 |
| Bst2BI | CACGAG | 1 cut(s) | 1607 |
| Bst6I | CTCTTC | 4 cut(s) | 117, 616, 1035, 2338 |
| BstC8I | GCNNGC | 4 cut(s) | 132, 992, 1154, 2284 |
| BstDSI | CCRYGG | 1 cut(s) | 309 |
| BstEII | GGTNACC | 1 cut(s) | 524 |
| BstF5I | GGATG | 3 cut(s) | 837, 1226, 1918 |
| BstFNI | CGCG | 1 cut(s) | 2798 |
| BstHHI | GCGC | 1 cut(s) | 2798 |
| BstMAI | GTCTC | 9 cut(s) | 275, 455, 1621, 1921, 2044, 2368, 2447, 2582, 2747 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 234, 1381, 1566, 1956, 2134 |
| BstNSI | RCATGY | 2 cut(s) | 688, 2749 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2208 |
| BstPI | GGTNACC | 1 cut(s) | 524 |
| BstSFI | CTRYAG | 2 cut(s) | 1154, 1829 |
| BstSLI | GKGCMC | 1 cut(s) | 1488 |
| BstUI | CGCG | 1 cut(s) | 2798 |
| BstV1I | GCAGC | 6 cut(s) | 191, 663, 707, 1168, 1908, 2115 |
| BstV2I | GAAGAC | 2 cut(s) | 1241, 2174 |
| BstX2I | RGATCY | 3 cut(s) | 154, 1190, 1683 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1659 |
| BstYI | RGATCY | 3 cut(s) | 154, 1190, 1683 |
| Bsu15I | ATCGAT | 1 cut(s) | 2268 |
| BsuI | GTATCC | 1 cut(s) | 2122 |
| BsuRI | GGCC | 2 cut(s) | 888, 1569 |
| BsuTUI | ATCGAT | 1 cut(s) | 2268 |
| BtgI | CCRYGG | 1 cut(s) | 309 |
| BtsCI | GGATG | 3 cut(s) | 837, 1226, 1918 |
| BtsI | GCAGTG | 1 cut(s) | 100 |
| BtsIMutI | CAGTG | 8 cut(s) | 100, 166, 237, 305, 889, 1255, 1905, 2130 |
| Cac8I | GCNNGC | 4 cut(s) | 132, 992, 1154, 2284 |
| CciI | TCATGA | 1 cut(s) | 2758 |
| CfoI | GCGC | 1 cut(s) | 2798 |
| Cfr13I | GGNCC | 4 cut(s) | 784, 887, 1568, 1761 |
| ClaI | ATCGAT | 1 cut(s) | 2268 |
| CseI | GACGC | 1 cut(s) | 2671 |
| Csp6I | GTAC | 1 cut(s) | 474 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 958, 993 |
| CviQI | GTAC | 1 cut(s) | 474 |
| DraI | TTTAAA | 1 cut(s) | 148 |
| DraIII | CACNNNGTG | 1 cut(s) | 2705 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 957 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 957 |
| Eam1104I | CTCTTC | 4 cut(s) | 117, 616, 1035, 2338 |
| EarI | CTCTTC | 4 cut(s) | 117, 616, 1035, 2338 |
| Ecl136II | GAGCTC | 2 cut(s) | 396, 1606 |
| Eco24I | GRGCYC | 2 cut(s) | 398, 1608 |
| Eco31I | GGTCTC | 2 cut(s) | 275, 1621 |
| Eco32I | GATATC | 3 cut(s) | 7, 458, 1674 |
| Eco47I | GGWCC | 2 cut(s) | 784, 1761 |
| Eco53kI | GAGCTC | 2 cut(s) | 396, 1606 |
| Eco57I | CTGAAG | 3 cut(s) | 1253, 2448, 2642 |
| Eco88I | CYCGRG | 1 cut(s) | 1639 |
| Eco91I | GGTNACC | 1 cut(s) | 524 |
| EcoICRI | GAGCTC | 2 cut(s) | 396, 1606 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1568 |
| EcoO65I | GGTNACC | 1 cut(s) | 524 |
| EcoRI | GAATTC | 4 cut(s) | 487, 874, 1868, 2637 |
| EcoRV | GATATC | 3 cut(s) | 7, 458, 1674 |
| EcoT22I | ATGCAT | 2 cut(s) | 116, 2751 |
| EcoT38I | GRGCYC | 2 cut(s) | 398, 1608 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2074, 2106, 2566, 2598, 2626, 2658 |
| FaqI | GGGAC | 1 cut(s) | 2242 |
| FauI | CCCGC | 2 cut(s) | 493, 2275 |
| Fnu4HI | GCNGC | 7 cut(s) | 205, 652, 721, 1157, 1897, 2129, 2946 |
| FokI | GGATG | 3 cut(s) | 844, 1213, 1925 |
| FriOI | GRGCYC | 2 cut(s) | 398, 1608 |
| Fsp4HI | GCNGC | 7 cut(s) | 205, 652, 721, 1157, 1897, 2129, 2946 |
| GlaI | GCGC | 1 cut(s) | 2797 |
| GluI | GCNGC | 7 cut(s) | 205, 652, 721, 1157, 1897, 2129, 2946 |
| HaeIII | GGCC | 2 cut(s) | 888, 1569 |
| HapII | CCGG | 2 cut(s) | 1863, 2631 |
| HgaI | GACGC | 1 cut(s) | 2671 |
| HhaI | GCGC | 1 cut(s) | 2798 |
| Hin6I | GCGC | 1 cut(s) | 2796 |
| HinP1I | GCGC | 1 cut(s) | 2796 |
| HincII | GTYRAC | 3 cut(s) | 259, 682, 2628 |
| HindII | GTYRAC | 3 cut(s) | 259, 682, 2628 |
| HindIII | AAGCTT | 3 cut(s) | 176, 1724, 2777 |
| HpaI | GTTAAC | 1 cut(s) | 682 |
| HpaII | CCGG | 2 cut(s) | 1863, 2631 |
| HphI | GGTGA | 2 cut(s) | 2312, 2429 |
| Hpy166II | GTNNAC | 6 cut(s) | 16, 259, 643, 682, 2156, 2628 |
| Hpy188I | TCNGA | 8 cut(s) | 455, 867, 1736, 1752, 1773, 1845, 2589, 2661 |
| Hpy8I | GTNNAC | 6 cut(s) | 16, 259, 643, 682, 2156, 2628 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 234, 1381, 1566, 1956, 2134 |
| HspAI | GCGC | 1 cut(s) | 2796 |
| Kpn2I | TCCGGA | 1 cut(s) | 1862 |
| KspAI | GTTAAC | 1 cut(s) | 682 |
| LguI | GCTCTTC | 1 cut(s) | 2338 |
| LmnI | GCTCC | 3 cut(s) | 439, 1539, 1893 |
| Lsp1109I | GCAGC | 6 cut(s) | 191, 663, 707, 1168, 1908, 2115 |
| LweI | GCATC | 2 cut(s) | 80, 1168 |
| MaeIII | GTNAC | 7 cut(s) | 194, 380, 524, 1086, 2210, 2320, 2329 |
| MfeI | CAATTG | 2 cut(s) | 2132, 2916 |
| MflI | RGATCY | 3 cut(s) | 154, 1190, 1683 |
| MhlI | GDGCHC | 4 cut(s) | 136, 398, 1488, 1608 |
| MlyI | GAGTC | 6 cut(s) | 906, 945, 1094, 1463, 1629, 2749 |
| MmeI | TCCRAC | 3 cut(s) | 851, 1501, 1674 |
| Mph1103I | ATGCAT | 2 cut(s) | 116, 2751 |
| MroI | TCCGGA | 1 cut(s) | 1862 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1294, 1366, 1518, 2641 |
| MslI | CAYNNNNRTG | 3 cut(s) | 76, 1547, 2004 |
| MspI | CCGG | 2 cut(s) | 1863, 2631 |
| MunI | CAATTG | 2 cut(s) | 2132, 2916 |
| Mva1269I | GAATGC | 5 cut(s) | 206, 1146, 1633, 1818, 1959 |
| MvnI | CGCG | 1 cut(s) | 2798 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 234, 1381, 1566, 1956, 2134 |
| NlaIV | GGNNCC | 5 cut(s) | 889, 1192, 1270, 1342, 1570 |
| NmeAIII | GCCGAG | 1 cut(s) | 1586 |
| NmuCI | GTSAC | 4 cut(s) | 194, 1086, 2210, 2329 |
| NsiI | ATGCAT | 2 cut(s) | 116, 2751 |
| NspI | RCATGY | 2 cut(s) | 688, 2749 |
| PacI | TTAATTAA | 1 cut(s) | 348 |
| PagI | TCATGA | 1 cut(s) | 2758 |
| PciSI | GCTCTTC | 1 cut(s) | 2338 |
| PctI | GAATGC | 5 cut(s) | 206, 1146, 1633, 1818, 1959 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1294, 1366, 1518, 2641 |
| PfeI | GAWTC | 9 cut(s) | 107, 415, 508, 1018, 1519, 1737, 1753, 2566, 2672 |
| PkrI | GCNGC | 7 cut(s) | 206, 653, 722, 1158, 1898, 2130, 2947 |
| PleI | GAGTC | 6 cut(s) | 906, 945, 1093, 1462, 1629, 2749 |
| PpsI | GAGTC | 6 cut(s) | 906, 945, 1093, 1462, 1629, 2749 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2208 |
| PshBI | ATTAAT | 3 cut(s) | 348, 810, 2475 |
| PsiI | TTATAA | 2 cut(s) | 1326, 1398 |
| Psp124BI | GAGCTC | 2 cut(s) | 398, 1608 |
| PspEI | GGTNACC | 1 cut(s) | 524 |
| PspN4I | GGNNCC | 5 cut(s) | 889, 1192, 1270, 1342, 1570 |
| PspPI | GGNCC | 4 cut(s) | 784, 887, 1568, 1761 |
| PstI | CTGCAG | 1 cut(s) | 1158 |
| PsuI | RGATCY | 3 cut(s) | 154, 1190, 1683 |
| RsaI | GTAC | 1 cut(s) | 475 |
| RsaNI | GTAC | 1 cut(s) | 474 |
| RseI | CAYNNNNRTG | 3 cut(s) | 76, 1547, 2004 |
| SacI | GAGCTC | 2 cut(s) | 398, 1608 |
| SapI | GCTCTTC | 1 cut(s) | 2338 |
| SatI | GCNGC | 7 cut(s) | 205, 652, 721, 1157, 1897, 2129, 2946 |
| Sau96I | GGNCC | 4 cut(s) | 784, 887, 1568, 1761 |
| SchI | GAGTC | 6 cut(s) | 906, 945, 1094, 1463, 1629, 2749 |
| SduI | GDGCHC | 4 cut(s) | 136, 398, 1488, 1608 |
| SfaNI | GCATC | 2 cut(s) | 80, 1168 |
| SfcI | CTRYAG | 2 cut(s) | 1154, 1829 |
| SinI | GGWCC | 2 cut(s) | 784, 1761 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 76, 1547, 2004 |
| SmlI | CTYRAG | 4 cut(s) | 391, 995, 1622, 2500 |
| SmoI | CTYRAG | 4 cut(s) | 391, 995, 1622, 2500 |
| SpeI | ACTAGT | 2 cut(s) | 287, 1303 |
| SsiI | CCGC | 6 cut(s) | 235, 500, 1719, 2282, 2798, 2946 |
| SspI | AATATT | 2 cut(s) | 1258, 1942 |
| SstI | GAGCTC | 2 cut(s) | 398, 1608 |
| TaqI | TCGA | 5 cut(s) | 398, 954, 1164, 2268, 2667 |
| TauI | GCSGC | 1 cut(s) | 2948 |
| TfiI | GAWTC | 9 cut(s) | 107, 415, 508, 1018, 1519, 1737, 1753, 2566, 2672 |
| TscAI | CASTG | 8 cut(s) | 100, 166, 244, 305, 889, 1255, 1912, 2130 |
| TseFI | GTSAC | 4 cut(s) | 194, 1086, 2210, 2329 |
| TseI | GCWGC | 6 cut(s) | 204, 651, 720, 1156, 1896, 2128 |
| Tsp45I | GTSAC | 4 cut(s) | 194, 1086, 2210, 2329 |
| TspGWI | ACGGA | 3 cut(s) | 254, 326, 1719 |
| TspRI | CASTG | 8 cut(s) | 100, 166, 244, 305, 889, 1255, 1912, 2130 |
| VpaK11BI | GGWCC | 2 cut(s) | 784, 1761 |
| VspI | ATTAAT | 3 cut(s) | 348, 810, 2475 |
| XbaI | TCTAGA | 1 cut(s) | 922 |
| XceI | RCATGY | 2 cut(s) | 688, 2749 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1294, 1366, 1518, 2641 |
| Zsp2I | ATGCAT | 2 cut(s) | 116, 2751 |