Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

31656423 .. 31658183

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG181200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTCGAGGTTATGCATGATTGCAAGACTACTGGGAGAAGCAGAGGATTTGGGTTTGTGTCTCACCATTTGGGATCACGAAATTTCGATTTCAGTGGTGCTTTTGAAAGCGCGGAGCTTTTGGTGATTCTGTGCAATGATGAATTTATGAGAAAACGTAACAAGGAATGGAGAGATGAGGACGGTGCTACTGGTGTTGTTTCCAAGTCCAAGCATGTGCTTGGTCTTAAGATTCCAAATTCTCTAGCAGCCAATCTTGGGGTAGTCACAGGAAAGCATTTGGCTGAGCACTGTAGAGCTAAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCTGAGATTTCTATAGTTGCATGTGACATTCCTGAAGATCCGCCTACAACTGTGTTTGATGGGTGGCTTCAGTGGGCTGCTGACATCCTACAGTACAGTTCCAAGTCCAGGTTCATTGTTGTTTTAATTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

157

Amino Acids

17.57

Weight (kDa)

7.73

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nramp	PF01566	81 - 125	9.3e-12	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	113, 380
AclWI	GGATC	2 cut(s)	82, 371
AcsI	RAATTY	3 cut(s)	82, 143, 238
AcuI	CTGAAG	2 cut(s)	392, 393
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	258, 447
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	2 cut(s)	118, 299
AluI	AGCT	2 cut(s)	118, 299
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	82, 371
ApeKI	GCWGC	2 cut(s)	248, 416
ApoI	RAATTY	3 cut(s)	82, 143, 238
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	56, 136
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	260, 403
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	3 cut(s)	292, 351, 428
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	2 cut(s)	249, 417
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	250, 418
Bme1390I	CCNGG	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	448
BmrI	ACTGGG	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 447
Bse1I	ACTGG	2 cut(s)	37, 196
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	324, 423
BseLI	CCNNNNNNNGG	2 cut(s)	258, 447
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	276, 333
BseNI	ACTGG	2 cut(s)	37, 196
BseXI	GCAGC	2 cut(s)	260, 403
Bsh1236I	CGCG	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	258, 447
BsmAI	GTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	74, 376
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	113, 380
BspCNI	CTCAG	2 cut(s)	277, 334
BspFNI	CGCG	1 cut(s)	113
BspPI	GGATC	2 cut(s)	82, 371
BspTI	CTTAAG	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	37, 196
BssMI	GATC	2 cut(s)	74, 376
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	5 cut(s)	185, 293, 391, 432, 437
BstAFI	CTTAAG	1 cut(s)	227
BstDEI	CTNAG	3 cut(s)	285, 309, 342
BstF5I	GGATG	2 cut(s)	324, 423
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	77, 379
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	74, 376
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	2 cut(s)	218, 363
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	3 cut(s)	292, 351, 428
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	260, 403
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	324, 423
BtsIMutI	CAGTG	3 cut(s)	100, 289, 416
CfoI	GCGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	17, 215, 360
CviJI	RGCY	6 cut(s)	118, 251, 284, 299, 406, 416
CviKI_1	RGCY	6 cut(s)	118, 251, 284, 299, 406, 416
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	285, 309, 342
DpnI	GATC	2 cut(s)	76, 378
DpnII	GATC	2 cut(s)	74, 376
EciI	GGCGGA	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	392, 393
EcoRII	CCWGG	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	18
FaeI	CATG	3 cut(s)	20, 218, 363
FaiI	YATR	6 cut(s)	14, 18, 149, 216, 353, 361
FatI	CATG	3 cut(s)	16, 214, 359
Fnu4HI	GCNGC	2 cut(s)	249, 417
FokI	GGATG	2 cut(s)	311, 410
Fsp4HI	GCNGC	2 cut(s)	249, 417
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	249, 417
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	20, 218, 363
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	127, 232
HphI	GGTGA	2 cut(s)	56, 136
Hpy188III	TCNNGA	3 cut(s)	78, 371, 471
HpyCH4III	ACNGT	5 cut(s)	185, 293, 391, 432, 437
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	16, 24, 135, 359
HpyF3I	CTNAG	3 cut(s)	285, 309, 342
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	20, 218, 363
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	74, 376
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	18, 177, 255, 384, 433, 460
Lsp1109I	GCAGC	2 cut(s)	260, 403
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	158, 265, 362
MalI	GATC	2 cut(s)	76, 378
MboI	GATC	2 cut(s)	74, 376
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	4 cut(s)	82, 143, 238, 465
MnlI	CCTC	2 cut(s)	38, 172
Mph1103I	ATGCAT	1 cut(s)	18
MseI	TTAA	2 cut(s)	228, 464
MspCI	CTTAAG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	113
NdeII	GATC	2 cut(s)	74, 376
NlaIII	CATG	3 cut(s)	20, 218, 363
NmuCI	GTSAC	2 cut(s)	265, 362
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	2 cut(s)	218, 363
PfeI	GAWTC	2 cut(s)	127, 232
PkrI	GCNGC	2 cut(s)	250, 418
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	228, 464
SatI	GCNGC	2 cut(s)	249, 417
Sau3AI	GATC	2 cut(s)	74, 376
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	5 cut(s)	12, 120, 160, 301, 452
SfcI	CTRYAG	3 cut(s)	292, 351, 428
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	82, 143, 238, 465
SsiI	CCGC	2 cut(s)	113, 380
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	446
TaaI	ACNGT	5 cut(s)	185, 293, 391, 432, 437
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	6, 87
TasI	AATT	4 cut(s)	82, 143, 238, 465
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	2 cut(s)	127, 232
Tru1I	TTAA	2 cut(s)	228, 464
Tru9I	TTAA	2 cut(s)	228, 464
TscAI	CASTG	3 cut(s)	100, 296, 416
TseFI	GTSAC	2 cut(s)	265, 362
TseI	GCWGC	2 cut(s)	248, 416
Tsp45I	GTSAC	2 cut(s)	265, 362
TspDTI	ATGAA	3 cut(s)	156, 313, 442
TspRI	CASTG	3 cut(s)	100, 296, 416
Vha464I	CTTAAG	1 cut(s)	227
XapI	RAATTY	3 cut(s)	82, 143, 238
XceI	RCATGY	2 cut(s)	218, 363
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.