Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Reverse (-)

29440740 .. 29441089

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGAAAACATAACAAGGAATGGAGAGACGAGGACAGTGCTCCTAGTGTTGTTTCCAAGTCCAAGCATGTGCCTGGTCTTAAGATTCCAAATGTTGTGTTGGGTGACATTGTGATTTCTGTTGAGATGGTGGCAAGGCAAGCAGAGCAAAGAGGCCACACACTTCTTGATGAGATGCGCCTTCTCATGGTAGGACTACTAGTGCTTATATTTCTCTTGCTATATGTAACATTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

79

Amino Acids

8.98

Weight (kDa)

7.95

Isoelectric Point (pI)

22.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbeY	PF02130	1 - 64	1.4e-09	Endoribonuclease YbeY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflII	CTTAAG	1 cut(s)	80
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	43
BccI	CCATC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	21
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	2 cut(s)	45, 200
BfrI	CTTAAG	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 145
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	1 cut(s)	180
CviAII	CATG	2 cut(s)	68, 187
CviJI	RGCY	1 cut(s)	156
CviKI_1	RGCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	71, 190
FaiI	YATR	6 cut(s)	12, 69, 188, 209, 223, 225
FatI	CATG	2 cut(s)	67, 186
FspBI	CTAG	2 cut(s)	45, 200
GlaI	GCGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	71, 190
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 145
Hsp92II	CATG	2 cut(s)	71, 190
HspAI	GCGC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	2 cut(s)	60, 87
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	45, 200
MaeIII	GTNAC	2 cut(s)	104, 226
MhlI	GDGCHC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	25, 146
MseI	TTAA	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	140, 145
NlaIII	CATG	2 cut(s)	71, 190
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	45, 200
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspRI	CASTG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	80
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	2 cut(s)	45, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.