Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Reverse (-)

41805930 .. 41807292

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0345700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCGGTCTACAGGTTAAAGTGCCATTGTATGGATGTGACTGCTATGCTTATGCCCTTCTGGCTTCTGGTTATGTGGATCTTGTTGTTGAGTCTGGTCTCAAGATACCTGTAATAGAAGGTTATGGGGGTGTCATAACTGATTGGAAAGGACATCAGCTTTTGTGGGAGGCTTCTGCCAATTCACATGCAACGAGTATGAGTACTTTTGTAATTGGACATTTTGAAAGCTCAGTTCATTATGATGGTGGTACTTTTGAAGCAAGGAGGACATTTACACATCGAAGGTTTAAGTACATATGCAAAAGAGGGAAGCCGTACATTTGGGTACCCAAGGAGTTGCATAATGTGAACTTAATTGTTGATGAACGAAGTTCTTTTTCTGTGGCTAATCTCATCCCAGGGCCACTGGCAAGCGCAAGTTTACTTAAAGCAATAAAAAAGGTCGAGTTGTATCCCTTCTCCAAAATTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

158

Amino Acids

17.54

Weight (kDa)

8.94

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	5 cut(s)	205, 253, 296, 320, 330
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	227, 260
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	3 cut(s)	160, 231, 474
AluI	AGCT	3 cut(s)	160, 231, 474
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	3, 404
Asp718I	GGTACC	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	328
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	402
BciVI	GTATCC	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	62
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	333, 400, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	3 cut(s)	333, 400, 401
BseGI	GGATG	2 cut(s)	41, 396
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	5, 406
BshNI	GGYRCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	5, 406
Bso31I	GGTCTC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	5, 406
BspCNI	CTCAG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	333, 400, 401
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	41, 396
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	5, 406
BtsCI	GGATG	2 cut(s)	41, 396
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	415
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	5 cut(s)	204, 252, 295, 319, 329
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	9 cut(s)	5, 65, 160, 173, 231, 316, 389, 406, 474
CviKI_1	RGCY	9 cut(s)	5, 65, 160, 173, 231, 316, 389, 406, 474
CviQI	GTAC	5 cut(s)	204, 252, 295, 319, 329
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	191
FatI	CATG	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	10
FokI	GGATG	2 cut(s)	48, 383
GlaI	GCGC	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	5, 406
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	11, 352, 425
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	3 cut(s)	11, 352, 425
HpyAV	CCTTC	4 cut(s)	68, 113, 279, 469
HpyCH4V	TGCA	3 cut(s)	191, 303, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	19, 47, 54, 81, 123, 387, 395, 414
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	4 cut(s)	181, 213, 357, 468
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	163, 261, 302
MseI	TTAA	4 cut(s)	18, 291, 356, 429
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	191
PasI	CCCWGGG	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	32
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	5 cut(s)	205, 253, 296, 320, 330
RsaNI	GTAC	5 cut(s)	204, 252, 295, 319, 329
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	18, 291, 356, 429
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	404
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	402
SetI	ASST	8 cut(s)	18, 112, 124, 162, 233, 290, 447, 476
SfcI	CTRYAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	181, 213, 357, 468
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	333
TaqI	TCGA	2 cut(s)	283, 447
TasI	AATT	4 cut(s)	181, 213, 357, 468
TatI	WGTACW	2 cut(s)	203, 294
Tru1I	TTAA	4 cut(s)	18, 291, 356, 429
Tru9I	TTAA	4 cut(s)	18, 291, 356, 429
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	2 cut(s)	227, 381
TspRI	CASTG	1 cut(s)	414
Van91I	CCANNNNNTGG	1 cut(s)	32
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	10
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.