Rroxscaffold_7G00178510

Metal transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
18167865 .. 18171992
4128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178510.1

Sequence Viewer

Length: 1350 bp
ATGGAAAGCCAGCAACAGAGAATAGGTGTTGGTGAGCGTGGAAGCAACCGCATCTATTCAGCAGAGGTCGAGACACCACCACCCTCCGATATCAAACAATTTGATGACCATTATGATGATCCTGAAAATCAGAAGCCTGGATGGAGGAAGTTTCTGGCACATGTAGGACCTGGGTTTCTCGTCTCCTTGGCTTACCTTGACCCCGGCAACTGCAAACATTTGTCGGAATTATGTAAGGCGGAGTACCCACCATTTGTAAAGTACTGTCTCTGGTTGCTTGCAGAGGTTGCTGTCATAGCTGCTGATATACCCGAAGTGATTGGAACAGCGTTTGCTCTAAATATACTGTTCAACATTCCAGTTTGGACTGGAGTACTATTGACTGGTTTCAGTACTCTCCTTCTTCTTGGCCTGCAGAGATATGGGGTTAGGAAGCTGGAAATGCTGATAGCAGTACTAGTGTTTGTAATGGCAGCCTGTTTCTTTGGTGAAATGGGTTATGTGAAGCCTCCTGCATCCGGTGTGATTGAAGGAATGTTTGTCCCCAAGCTCAGCGGCCAAGGAGCCACCGGTGACGCCATCGCCCTCTTGGGTGCCCTTGTCATGCCCCACAATCTTTTTCTCCACTCTGCTCTTGTGCTTTCAAGGAAAGTCCCGAACTCTGTCCGTGGCATCAATGATGCATGTCGATATTTCTTGATAGAAAGTGGATTTGCATTATTCATAGCATTTCTAATCAATGTTGCCATTGTCTCTGTGTCGGGAACCGTTTGCCACGGAGATAACCTCTCTGACAAGGATGCTAAAACATGTAGCGATCTGACACTCAATTCTGCTTCTTTTCTTCTCCAGAATGTGTTGGGAAAGTCAAGCAAAGTCATCTATGCTATTGCACTATTAGCCTCAGGACAAAGCTCAACCATTACAGGCACTTACGCAGGACAATTTGTCATGCAGGGTTTCTTGGACATTAAGATGAAAAAATGGCTTAGAAACCTGATGACTAGGTGTATTGCCATTACACCTAGTCTTGTTGTTTCCATCATCGGGATGGGAATCATTGGAATCAACATCTATTACCTCAGCACAGGCTTTGTGGGCTGGATAATCCATAGCAGTCTCCCCAAAGTTGCAACTGTGTTTATTGGGATCTTGGTGTTCCCCTTAATGGCAATTTACATCCTTGCAGTCCTTTACTTAACTGTCAGAAAAGACACTGTTATAACATTCATTGAGCCAACAAAGAACGACCCAGCGGCCCAGAACCAAATGGAAAGTGGGATCACCAACACGCATGGACCTCCTGTACCTTTCAGGGAGGATTTGGCTGACGTTCCTCTACCAGAATAG

Protein Analysis

449

Amino Acids

48.81

Weight (kDa)

6.46

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 72 - 363 2.2e-83 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1223
AccB1I GGYRCC 1 cut(s) 593
AciI CCGC 4 cut(s) 49, 239, 555, 1256
AclWI GGATC 3 cut(s) 113, 1157, 1289
AcoI YGGCCR 1 cut(s) 556
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 6 cut(s) 245, 263, 375, 394, 456, 1308
AfiI CCNNNNNNNGG 3 cut(s) 518, 1047, 1168
AflIII ACRYGT 2 cut(s) 160, 809
AgeI ACCGGT 1 cut(s) 569
AgsI TTSAA 3 cut(s) 352, 530, 645
AhdI GACNNNNNGTC 1 cut(s) 947
AhlI ACTAGT 1 cut(s) 457
AjnI CCWGG 2 cut(s) 136, 169
AluBI AGCT 4 cut(s) 299, 436, 550, 915
AluI AGCT 4 cut(s) 299, 436, 550, 915
Alw26I GTCTC 5 cut(s) 65, 187, 272, 757, 1124
AlwI GGATC 3 cut(s) 113, 1157, 1289
AoxI GGCC 3 cut(s) 409, 556, 1257
ApeKI GCWGC 2 cut(s) 299, 473
AsiGI ACCGGT 1 cut(s) 569
AspS9I GGNCC 3 cut(s) 167, 1258, 1298
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 4 cut(s) 44, 500, 584, 1276
AvaII GGWCC 2 cut(s) 167, 1298
AxyI CCTNAGG 1 cut(s) 904
BaeGI GKGCMC 1 cut(s) 598
BanI GGYRCC 1 cut(s) 593
BbvCI CCTCAGC 1 cut(s) 1082
BbvI GCAGC 2 cut(s) 286, 485
BccI CCATC 4 cut(s) 135, 587, 1045, 1049
BciT130I CCWGG 2 cut(s) 138, 171
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 5 cut(s) 65, 187, 272, 757, 1124
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 3 cut(s) 458, 1005, 1026
BfmI CTRYAG 1 cut(s) 413
BisI GCNGC 4 cut(s) 300, 474, 556, 1257
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 4 cut(s) 301, 475, 557, 1258
BmcAI AGTACT 4 cut(s) 263, 375, 394, 456
Bme1390I CCNGG 3 cut(s) 138, 171, 204
Bme18I GGWCC 2 cut(s) 167, 1298
BmeRI GACNNNNNGTC 1 cut(s) 947
BmgT120I GGNCC 3 cut(s) 167, 1258, 1298
BmiI GGNNCC 3 cut(s) 565, 595, 766
BmrFI CCNGG 3 cut(s) 138, 171, 204
BmsI GCATC 5 cut(s) 60, 524, 670, 681, 790
BplI GAGNNNNNCTC 2 cut(s) 771, 803
BpmI CTGGAG 2 cut(s) 390, 833
Bpu10I CCTNAGC 1 cut(s) 1082
Bpu1102I GCTNAGC 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 1055
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 6 cut(s) 170, 186, 202, 559, 667, 775
BsaWI WCCGGW 2 cut(s) 518, 569
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 1047, 1168
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 3 cut(s) 359, 373, 388
Bse21I CCTNAGG 1 cut(s) 904
Bse8I GATNNNNATC 1 cut(s) 1055
BseBI CCWGG 2 cut(s) 138, 171
BseDI CCNNGG 6 cut(s) 170, 186, 202, 559, 667, 775
BseGI GGATG 5 cut(s) 146, 515, 805, 1056, 1179
BseJI GATNNNNATC 1 cut(s) 1055
BseLI CCNNNNNNNGG 3 cut(s) 518, 1047, 1168
BseMII CTCAG 3 cut(s) 565, 918, 1096
BseNI ACTGG 3 cut(s) 359, 373, 388
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 2 cut(s) 286, 485
BseYI CCCAGC 1 cut(s) 1252
BshFI GGCC 3 cut(s) 411, 558, 1259
BshNI GGYRCC 1 cut(s) 593
BshTI ACCGGT 1 cut(s) 569
BsiSI CCGG 3 cut(s) 204, 519, 570
BslFI GGGAC 2 cut(s) 527, 638
BslI CCNNNNNNNGG 3 cut(s) 518, 1047, 1168
BsmAI GTCTC 5 cut(s) 65, 187, 272, 757, 1124
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 527, 638
BsnI GGCC 3 cut(s) 411, 558, 1259
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 4 cut(s) 118, 817, 1149, 1281
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 4 cut(s) 49, 239, 555, 1256
BspANI GGCC 3 cut(s) 411, 558, 1259
BspCNI CTCAG 3 cut(s) 564, 917, 1095
BspLI GGNNCC 3 cut(s) 565, 595, 766
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 3 cut(s) 113, 1157, 1289
BspT107I GGYRCC 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 3 cut(s) 359, 373, 388
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 6 cut(s) 170, 186, 202, 559, 667, 775
BssMI GATC 4 cut(s) 118, 817, 1149, 1281
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 2 cut(s) 186, 559
Bst2UI CCWGG 2 cut(s) 138, 171
Bst4CI ACNGT 6 cut(s) 266, 348, 769, 1138, 1204, 1219
BstACI GRCGYC 1 cut(s) 576
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 11, 279, 413
BstDEI CTNAG 4 cut(s) 551, 904, 989, 1082
BstDSI CCRYGG 2 cut(s) 667, 775
BstF5I GGATG 5 cut(s) 146, 515, 805, 1056, 1179
BstKTI GATC 4 cut(s) 121, 820, 1152, 1284
BstMAI GTCTC 5 cut(s) 65, 187, 272, 757, 1124
BstMBI GATC 4 cut(s) 118, 817, 1149, 1281
BstMWI GCNNNNNNNGC 5 cut(s) 287, 296, 442, 899, 1098
BstNI CCWGG 2 cut(s) 138, 171
BstNSI RCATGY 3 cut(s) 164, 687, 813
BstSCI CCNGG 3 cut(s) 136, 169, 202
BstSFI CTRYAG 1 cut(s) 413
BstSLI GKGCMC 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 286, 485
BstX2I RGATCY 1 cut(s) 1149
BstYI RGATCY 1 cut(s) 1149
Bsu36I CCTNAGG 1 cut(s) 904
BsuRI GGCC 3 cut(s) 411, 558, 1259
BtgI CCRYGG 2 cut(s) 667, 775
BtgZI GCGATG 1 cut(s) 565
BtsCI GGATG 5 cut(s) 146, 515, 805, 1056, 1179
BtsIMutI CAGTG 1 cut(s) 1215
Cac8I GCNNGC 3 cut(s) 11, 279, 413
Cfr10I RCCGGY 1 cut(s) 569
Cfr13I GGNCC 3 cut(s) 167, 1258, 1298
CseI GACGC 1 cut(s) 584
Csp6I GTAC 6 cut(s) 244, 262, 374, 393, 455, 1307
CspAI ACCGGT 1 cut(s) 569
CviAII CATG 6 cut(s) 161, 604, 684, 810, 952, 1295
CviQI GTAC 6 cut(s) 244, 262, 374, 393, 455, 1307
DdeI CTNAG 4 cut(s) 551, 904, 989, 1082
DpnI GATC 4 cut(s) 120, 819, 1151, 1283
DpnII GATC 4 cut(s) 118, 817, 1149, 1281
DriI GACNNNNNGTC 1 cut(s) 947
EaeI YGGCCR 1 cut(s) 556
Eam1105I GACNNNNNGTC 1 cut(s) 947
EciI GGCGGA 1 cut(s) 254
Eco130I CCWWGG 2 cut(s) 186, 559
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 167, 1298
Eco81I CCTNAGG 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 136, 169
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 186, 559
EcoT22I ATGCAT 1 cut(s) 685
ErhI CCWWGG 2 cut(s) 186, 559
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 6 cut(s) 164, 607, 687, 813, 955, 1298
FaqI GGGAC 2 cut(s) 527, 638
FatI CATG 6 cut(s) 160, 603, 683, 809, 951, 1294
Fnu4HI GCNGC 4 cut(s) 300, 474, 556, 1257
FokI GGATG 5 cut(s) 153, 502, 812, 1063, 1166
Fsp4HI GCNGC 4 cut(s) 300, 474, 556, 1257
FspBI CTAG 3 cut(s) 458, 1005, 1026
GluI GCNGC 4 cut(s) 300, 474, 556, 1257
GsaI CCCAGC 1 cut(s) 1256
GsuI CTGGAG 2 cut(s) 390, 833
HaeIII GGCC 3 cut(s) 411, 558, 1259
HapII CCGG 3 cut(s) 204, 519, 570
HgaI GACGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 6 cut(s) 164, 607, 687, 813, 955, 1298
HinfI GANTC 2 cut(s) 1056, 1065
HpaII CCGG 3 cut(s) 204, 519, 570
HphI GGTGA 4 cut(s) 44, 500, 584, 1276
Hpy188I TCNGA 6 cut(s) 88, 132, 226, 793, 822, 1208
Hpy188III TCNNGA 8 cut(s) 70, 122, 655, 697, 762, 850, 906, 1048
HpyAV CCTTC 2 cut(s) 410, 524
HpyCH4III ACNGT 6 cut(s) 266, 348, 769, 1138, 1204, 1219
HpyCH4IV ACGT 1 cut(s) 1332
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 296, 442, 899, 1098
HpyF3I CTNAG 4 cut(s) 551, 904, 989, 1082
HpySE526I ACGT 1 cut(s) 1332
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 6 cut(s) 164, 607, 687, 813, 955, 1298
Kzo9I GATC 4 cut(s) 118, 817, 1149, 1281
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 2 cut(s) 286, 485
LweI GCATC 5 cut(s) 60, 524, 670, 681, 790
MaeI CTAG 3 cut(s) 458, 1005, 1026
MaeII ACGT 1 cut(s) 1332
MaeIII GTNAC 1 cut(s) 572
MalI GATC 4 cut(s) 120, 819, 1151, 1283
MboI GATC 4 cut(s) 118, 817, 1149, 1281
MboII GAAGA 2 cut(s) 395, 836
MflI RGATCY 1 cut(s) 1149
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 5 cut(s) 98, 227, 829, 944, 1173
MmeI TCCRAC 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 685
MseI TTAA 3 cut(s) 972, 1166, 1199
MslI CAYNNNNRTG 3 cut(s) 114, 974, 1049
MspA1I CMGCKG 2 cut(s) 555, 1256
MspI CCGG 3 cut(s) 204, 519, 570
MspR9I CCNGG 3 cut(s) 138, 171, 204
MvaI CCWGG 2 cut(s) 138, 171
MwoI GCNNNNNNNGC 5 cut(s) 287, 296, 442, 899, 1098
NciI CCSGG 1 cut(s) 204
NdeII GATC 4 cut(s) 118, 817, 1149, 1281
NlaIII CATG 6 cut(s) 164, 607, 687, 813, 955, 1298
NlaIV GGNNCC 3 cut(s) 565, 595, 766
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 3 cut(s) 164, 687, 813
PciI ACATGT 2 cut(s) 160, 809
PfeI GAWTC 2 cut(s) 1056, 1065
PinAI ACCGGT 1 cut(s) 569
PkrI GCNGC 4 cut(s) 301, 475, 557, 1258
PpuMI RGGWCCY 1 cut(s) 167
PscI ACATGT 2 cut(s) 160, 809
PsiI TTATAA 1 cut(s) 1223
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 136, 169
PspFI CCCAGC 1 cut(s) 1252
PspGI CCWGG 2 cut(s) 136, 169
PspN4I GGNNCC 3 cut(s) 565, 595, 766
PspPI GGNCC 3 cut(s) 167, 1258, 1298
PspPPI RGGWCCY 1 cut(s) 167
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 1 cut(s) 1149
RsaI GTAC 6 cut(s) 245, 263, 375, 394, 456, 1308
RsaNI GTAC 6 cut(s) 244, 262, 374, 393, 455, 1307
RseI CAYNNNNRTG 3 cut(s) 114, 974, 1049
SaqAI TTAA 3 cut(s) 972, 1166, 1199
SatI GCNGC 4 cut(s) 300, 474, 556, 1257
Sau3AI GATC 4 cut(s) 118, 817, 1149, 1281
Sau96I GGNCC 3 cut(s) 167, 1258, 1298
ScaI AGTACT 4 cut(s) 263, 375, 394, 456
ScrFI CCNGG 3 cut(s) 138, 171, 204
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 5 cut(s) 60, 524, 670, 681, 790
SfcI CTRYAG 1 cut(s) 413
SgrAI CRCCGGYG 1 cut(s) 569
SinI GGWCC 2 cut(s) 167, 1298
SmiMI CAYNNNNRTG 3 cut(s) 114, 974, 1049
SpeI ACTAGT 1 cut(s) 457
Sse9I AATT 5 cut(s) 98, 227, 829, 944, 1173
SsiI CCGC 4 cut(s) 49, 239, 555, 1256
SspMI CTAG 3 cut(s) 458, 1005, 1026
StyD4I CCNGG 3 cut(s) 136, 169, 202
StyI CCWWGG 2 cut(s) 186, 559
TaaI ACNGT 6 cut(s) 266, 348, 769, 1138, 1204, 1219
TaiI ACGT 1 cut(s) 1335
TaqI TCGA 2 cut(s) 69, 688
TasI AATT 5 cut(s) 98, 227, 829, 944, 1173
TatI WGTACW 4 cut(s) 261, 373, 392, 454
TauI GCSGC 2 cut(s) 558, 1259
TfiI GAWTC 2 cut(s) 1056, 1065
Tru1I TTAA 3 cut(s) 972, 1166, 1199
Tru9I TTAA 3 cut(s) 972, 1166, 1199
TscAI CASTG 1 cut(s) 1222
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 2 cut(s) 299, 473
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 3 cut(s) 712, 992, 1219
TspGWI ACGGA 2 cut(s) 656, 792
TspRI CASTG 1 cut(s) 1222
VpaK11BI GGWCC 2 cut(s) 167, 1298
XceI RCATGY 3 cut(s) 164, 687, 813
XcmI CCANNNNNNNNNTGG 3 cut(s) 586, 1048, 1274
XspI CTAG 3 cut(s) 458, 1005, 1026
ZrmI AGTACT 4 cut(s) 263, 375, 394, 456
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.