RLG00000011698

Metal transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
11856073 .. 11869791
13719 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011698

Sequence Viewer

Length: 1563 bp
ATGGAAATCCAGCAACAGAGAATAGGGGTTGGTGAGCGTGGAAGCAACCGCATCTATTCAGCAGAGGTCGAGACACCACCCCCCTCCGATATCAAACAATTTGATGACCATCATGATGATCCTGAAAATCAGAAGCTTGGATGGAGGAAGTTTCTGGCACATGTAGGACCTGGGTTTCTCGTCTCCATGGCTTACATTGACCCCGGCAACTTTGAAACTGATATGCAAGCTGGAGCAAATCACCAATACGAGCTACTTTGGGTTATACTCATCGGATTGATCTTCGCTCTCATAATCCAATCTCTGTCAGCAAACCTTGGCGTGAGCACAGGCAAACATTTGTCGGAATTATGTAAGGCGGAGTACCCACCATTTGTGAAGTACTGTCTCTGGTTGCTTGCAGAGGCTGCTGTCATAGCTGCTGATATACCCGAAGTGATTGGAACAGCCTTTGCTCTAAATATACTGTTCAACATTCCAGTTTGGACTGGAGTACTATTGACTGGTTTCAGTACTCTCCTTCTTCTTGGCCTGCAGAGATATGGGGTTAGGAAGCTGGAAATGCTGATAGCAGTACTAGTGTTTGTAATGGCAGCCTGTTTCTTTGGTGAAATGGGTTATGTGAAGCCTCCTGCATCGGGTGTGATCGAAGGAATGTTTGTCCCCAAGTTCAGCGGCCAAGGAGCCACTGGTGACGCCATCGCCCTCTTGGGTGCCCTTGTCATGCCCCACAATCTTTTTCTCCACTCTGCTCTTGTGCTTTCAAGGAAAGTCCCAAACTCTGTCCGTGGCATCAATGACGCATGTCGATATTTCTTGATAGAAAGTGGATTCGCTTTGTTCATAGCATTTCTAATCAATGTTTCCATTGTCTCTGTGTCCGGAACCGTTTGCCACGAAGATAACCTCTCTGACAAGGATGCTAAAACATGTAGCGATCTGACACTCAATTCTGCTTCTTTTCTTCTCCAGAATGTGTTGGGAAAGTCAAGCAAAGTCATCTATGCTATTGCACTATTAGCCTCAGGACAAAGCTCAACCATTACAGGCACTTACGCTGGACAATTTGTCATGCAGGGTTTCTTGGACATTAAGATGAAAACTTGGCTTAGAAACCTGATGACTAGGTGCATTGCCATTACACCTAGTCTTGTTGTTTCCATAATCGGTGGGCCTTCAGGAGCAGGGAGACTCATTATCATTGCATCGATGGGACCTCACAAGAATTCGATCTACATCATTGTGGTATCATGGATTCTAGGGATGGGAATCATTGCAATCAACATCTATTACCTCAGCACAGGCTTTGTGGGCTGGATAATCCACAGCAGTCTCCCCAAAGTTGCAACTGTGTTTATTGGGATCTTGGTGTTCCCCTTAATGGCCATTTACATCCTTGCACTCATTTACTTAACTCTAAGAAAAGACAGTGTTGTAACATTCATTGAGCCGACAAAGAACTACCCAACAGCCCAGAACCAAATGGAAAGTGGGATCACCAACACGCATGGACCTCCTGTACCTTTTAGAGAGGATTTGGCTGACGTTCCTCTACCAGAATAA

Protein Analysis

521

Amino Acids

56.53

Weight (kDa)

6.27

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 71 - 403 1.7e-103 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 713
AccIII TCCGGA 1 cut(s) 881
AciI CCGC 3 cut(s) 49, 359, 675
AclWI GGATC 3 cut(s) 113, 1370, 1502
AcoI YGGCCR 2 cut(s) 676, 1383
AcsI RAATTY 1 cut(s) 1225
AcuI CTGAAG 1 cut(s) 1161
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 6 cut(s) 365, 383, 495, 514, 576, 1521
AfiI CCNNNNNNNGG 2 cut(s) 638, 1381
AflIII ACRYGT 2 cut(s) 160, 929
AgsI TTSAA 3 cut(s) 215, 472, 765
AhdI GACNNNNNGTC 1 cut(s) 1067
AhlI ACTAGT 1 cut(s) 577
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 6 cut(s) 136, 230, 253, 419, 556, 1035
AluI AGCT 6 cut(s) 136, 230, 253, 419, 556, 1035
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 6 cut(s) 65, 187, 392, 877, 1183, 1337
AlwI GGATC 3 cut(s) 113, 1370, 1502
AlwNI CAGNNNCTG 1 cut(s) 407
Aor13HI TCCGGA 1 cut(s) 881
AoxI GGCC 4 cut(s) 529, 676, 1172, 1383
ApeKI GCWGC 3 cut(s) 407, 419, 593
ApoI RAATTY 1 cut(s) 1225
AspS9I GGNCC 4 cut(s) 167, 1172, 1214, 1511
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 5 cut(s) 44, 233, 620, 704, 1489
AvaII GGWCC 3 cut(s) 167, 1214, 1511
AxyI CCTNAGG 1 cut(s) 1024
BaeGI GKGCMC 1 cut(s) 718
BalI TGGCCA 1 cut(s) 1385
BanI GGYRCC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 1295
BbvI GCAGC 3 cut(s) 394, 406, 605
BccI CCATC 5 cut(s) 117, 135, 707, 1204, 1258
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 6 cut(s) 65, 187, 392, 877, 1183, 1337
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 4 cut(s) 578, 1125, 1146, 1259
BfmI CTRYAG 1 cut(s) 533
BisI GCNGC 4 cut(s) 408, 420, 594, 676
BlsI GCNGC 4 cut(s) 409, 421, 595, 677
BmcAI AGTACT 4 cut(s) 383, 495, 514, 576
Bme1390I CCNGG 2 cut(s) 171, 204
Bme18I GGWCC 3 cut(s) 167, 1214, 1511
BmeRI GACNNNNNGTC 1 cut(s) 1067
BmgT120I GGNCC 4 cut(s) 167, 1172, 1214, 1511
BmiI GGNNCC 4 cut(s) 685, 715, 886, 1215
BmrFI CCNGG 2 cut(s) 171, 204
BmsI GCATC 5 cut(s) 60, 644, 801, 910, 1214
BoxI GACNNNNGTC 1 cut(s) 804
BpmI CTGGAG 3 cut(s) 252, 510, 953
Bpu10I CCTNAGC 1 cut(s) 1295
BpuMI CCSGG 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 1208
BsaBI GATNNNNATC 3 cut(s) 108, 1235, 1268
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 6 cut(s) 170, 186, 202, 316, 679, 787
BsaWI WCCGGW 1 cut(s) 881
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 1381
Bse1I ACTGG 4 cut(s) 479, 493, 508, 694
Bse21I CCTNAGG 1 cut(s) 1024
Bse3DI GCAATG 3 cut(s) 1131, 1200, 1272
Bse8I GATNNNNATC 3 cut(s) 108, 1235, 1268
BseAI TCCGGA 1 cut(s) 881
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 1208
BseDI CCNNGG 6 cut(s) 170, 186, 202, 316, 679, 787
BseGI GGATG 4 cut(s) 146, 925, 1269, 1392
BseJI GATNNNNATC 3 cut(s) 108, 1235, 1268
BseLI CCNNNNNNNGG 2 cut(s) 638, 1381
BseMI GCAATG 3 cut(s) 1131, 1200, 1272
BseMII CTCAG 2 cut(s) 1038, 1309
BseNI ACTGG 4 cut(s) 479, 493, 508, 694
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 3 cut(s) 394, 406, 605
BshFI GGCC 4 cut(s) 531, 678, 1174, 1385
BshNI GGYRCC 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 1208
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 204, 882
BslFI GGGAC 3 cut(s) 647, 758, 1227
BslI CCNNNNNNNGG 2 cut(s) 638, 1381
BsmAI GTCTC 6 cut(s) 65, 187, 392, 877, 1183, 1337
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 3 cut(s) 647, 758, 1227
BsnI GGCC 4 cut(s) 531, 678, 1174, 1385
Bsp1286I GDGCHC 2 cut(s) 329, 718
Bsp13I TCCGGA 1 cut(s) 881
Bsp143I GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 49, 359, 675
BspANI GGCC 4 cut(s) 531, 678, 1174, 1385
BspCNI CTCAG 2 cut(s) 1037, 1308
BspDI ATCGAT 1 cut(s) 1208
BspEI TCCGGA 1 cut(s) 881
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 4 cut(s) 685, 715, 886, 1215
BspMAI CTGCAG 1 cut(s) 537
BspPI GGATC 3 cut(s) 113, 1370, 1502
BspT107I GGYRCC 1 cut(s) 713
BsrDI GCAATG 3 cut(s) 1131, 1200, 1272
BsrI ACTGG 4 cut(s) 479, 493, 508, 694
BssECI CCNNGG 6 cut(s) 170, 186, 202, 316, 679, 787
BssMI GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 3 cut(s) 186, 316, 679
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 5 cut(s) 386, 468, 889, 1351, 1430
BstACI GRCGYC 1 cut(s) 696
BstAPI GCANNNNNTGC 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 228, 399, 533
BstDEI CTNAG 4 cut(s) 1024, 1109, 1295, 1418
BstDSI CCRYGG 2 cut(s) 186, 787
BstF5I GGATG 4 cut(s) 146, 925, 1269, 1392
BstKTI GATC 7 cut(s) 121, 282, 648, 940, 1233, 1365, 1497
BstMAI GTCTC 6 cut(s) 65, 187, 392, 877, 1183, 1337
BstMBI GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
BstMWI GCNNNNNNNGC 5 cut(s) 407, 416, 562, 1019, 1311
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 3 cut(s) 164, 807, 933
BstPAI GACNNNNGTC 1 cut(s) 804
BstSCI CCNGG 2 cut(s) 169, 202
BstSFI CTRYAG 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 718
BstV1I GCAGC 3 cut(s) 394, 406, 605
BstX2I RGATCY 1 cut(s) 1362
BstYI RGATCY 1 cut(s) 1362
Bsu15I ATCGAT 1 cut(s) 1208
Bsu36I CCTNAGG 1 cut(s) 1024
BsuRI GGCC 4 cut(s) 531, 678, 1174, 1385
BsuTUI ATCGAT 1 cut(s) 1208
BtgI CCRYGG 2 cut(s) 186, 787
BtgZI GCGATG 1 cut(s) 685
BtsCI GGATG 4 cut(s) 146, 925, 1269, 1392
BtsIMutI CAGTG 2 cut(s) 687, 1435
Cac8I GCNNGC 3 cut(s) 228, 399, 533
CaiI CAGNNNCTG 1 cut(s) 407
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 4 cut(s) 167, 1172, 1214, 1511
ClaI ATCGAT 1 cut(s) 1208
CseI GACGC 2 cut(s) 704, 809
Csp6I GTAC 6 cut(s) 364, 382, 494, 513, 575, 1520
CviAII CATG 9 cut(s) 113, 161, 187, 724, 804, 930, 1072, 1251, 1508
CviQI GTAC 6 cut(s) 364, 382, 494, 513, 575, 1520
DdeI CTNAG 4 cut(s) 1024, 1109, 1295, 1418
DpnI GATC 7 cut(s) 120, 281, 647, 939, 1232, 1364, 1496
DpnII GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
DriI GACNNNNNGTC 1 cut(s) 1067
EaeI YGGCCR 2 cut(s) 676, 1383
Eam1105I GACNNNNNGTC 1 cut(s) 1067
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 3 cut(s) 186, 316, 679
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 167, 1214, 1511
Eco57I CTGAAG 1 cut(s) 1161
Eco81I CCTNAGG 1 cut(s) 1024
EcoO109I RGGNCCY 2 cut(s) 167, 1214
EcoRI GAATTC 1 cut(s) 1225
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 186, 316, 679
ErhI CCWWGG 3 cut(s) 186, 316, 679
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 9 cut(s) 116, 164, 190, 727, 807, 933, 1075, 1254, 1511
FaqI GGGAC 3 cut(s) 647, 758, 1227
FatI CATG 9 cut(s) 112, 160, 186, 723, 803, 929, 1071, 1250, 1507
Fnu4HI GCNGC 4 cut(s) 408, 420, 594, 676
FokI GGATG 4 cut(s) 153, 932, 1276, 1379
Fsp4HI GCNGC 4 cut(s) 408, 420, 594, 676
FspBI CTAG 4 cut(s) 578, 1125, 1146, 1259
GluI GCNGC 4 cut(s) 408, 420, 594, 676
GsuI CTGGAG 3 cut(s) 252, 510, 953
HaeIII GGCC 4 cut(s) 531, 678, 1174, 1385
HapII CCGG 2 cut(s) 204, 882
HgaI GACGC 2 cut(s) 704, 809
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 9 cut(s) 116, 164, 190, 727, 807, 933, 1075, 1254, 1511
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 4 cut(s) 831, 1191, 1255, 1269
HpaII CCGG 2 cut(s) 204, 882
HphI GGTGA 5 cut(s) 44, 233, 620, 704, 1489
Hpy188I TCNGA 6 cut(s) 88, 132, 275, 346, 913, 942
Hpy188III TCNNGA 8 cut(s) 70, 113, 122, 817, 882, 970, 1026, 1179
HpyAV CCTTC 3 cut(s) 530, 644, 1185
HpyCH4III ACNGT 5 cut(s) 386, 468, 889, 1351, 1430
HpyCH4IV ACGT 1 cut(s) 1545
HpyF10VI GCNNNNNNNGC 5 cut(s) 407, 416, 562, 1019, 1311
HpyF3I CTNAG 4 cut(s) 1024, 1109, 1295, 1418
HpySE526I ACGT 1 cut(s) 1545
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 9 cut(s) 116, 164, 190, 727, 807, 933, 1075, 1254, 1511
Kpn2I TCCGGA 1 cut(s) 881
Kzo9I GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
LmnI GCTCC 3 cut(s) 233, 683, 1181
Lsp1109I GCAGC 3 cut(s) 394, 406, 605
LweI GCATC 5 cut(s) 60, 644, 801, 910, 1214
MaeI CTAG 4 cut(s) 578, 1125, 1146, 1259
MaeII ACGT 1 cut(s) 1545
MaeIII GTNAC 2 cut(s) 692, 1435
MalI GATC 7 cut(s) 120, 281, 647, 939, 1232, 1364, 1496
MboI GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
MboII GAAGA 4 cut(s) 274, 515, 911, 956
MflI RGATCY 1 cut(s) 1362
MhlI GDGCHC 2 cut(s) 329, 718
MlsI TGGCCA 1 cut(s) 1385
MluCI AATT 5 cut(s) 98, 347, 949, 1064, 1225
MluNI TGGCCA 1 cut(s) 1385
MlyI GAGTC 1 cut(s) 1185
MmeI TCCRAC 1 cut(s) 324
Mox20I TGGCCA 1 cut(s) 1385
MroI TCCGGA 1 cut(s) 881
MscI TGGCCA 1 cut(s) 1385
MseI TTAA 3 cut(s) 1092, 1379, 1412
MslI CAYNNNNRTG 3 cut(s) 114, 1094, 1241
Msp20I TGGCCA 1 cut(s) 1385
MspA1I CMGCKG 1 cut(s) 675
MspI CCGG 2 cut(s) 204, 882
MspR9I CCNGG 2 cut(s) 171, 204
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 5 cut(s) 407, 416, 562, 1019, 1311
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 1 cut(s) 186
NdeII GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
NlaIII CATG 9 cut(s) 116, 164, 190, 727, 807, 933, 1075, 1254, 1511
NlaIV GGNNCC 4 cut(s) 685, 715, 886, 1215
NmuCI GTSAC 1 cut(s) 692
NspI RCATGY 3 cut(s) 164, 807, 933
PagI TCATGA 1 cut(s) 112
PciI ACATGT 2 cut(s) 160, 929
PfeI GAWTC 3 cut(s) 831, 1255, 1269
PkrI GCNGC 4 cut(s) 409, 421, 595, 677
PleI GAGTC 1 cut(s) 1185
PpsI GAGTC 1 cut(s) 1185
PpuMI RGGWCCY 2 cut(s) 167, 1214
PscI ACATGT 2 cut(s) 160, 929
PshAI GACNNNNGTC 1 cut(s) 804
Psp5II RGGWCCY 2 cut(s) 167, 1214
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 4 cut(s) 685, 715, 886, 1215
PspPI GGNCC 4 cut(s) 167, 1172, 1214, 1511
PspPPI RGGWCCY 2 cut(s) 167, 1214
PstI CTGCAG 1 cut(s) 537
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 1362
RsaI GTAC 6 cut(s) 365, 383, 495, 514, 576, 1521
RsaNI GTAC 6 cut(s) 364, 382, 494, 513, 575, 1520
RseI CAYNNNNRTG 3 cut(s) 114, 1094, 1241
SaqAI TTAA 3 cut(s) 1092, 1379, 1412
SatI GCNGC 4 cut(s) 408, 420, 594, 676
Sau3AI GATC 7 cut(s) 118, 279, 645, 937, 1230, 1362, 1494
Sau96I GGNCC 4 cut(s) 167, 1172, 1214, 1511
ScaI AGTACT 4 cut(s) 383, 495, 514, 576
SchI GAGTC 1 cut(s) 1185
ScrFI CCNGG 2 cut(s) 171, 204
SduI GDGCHC 2 cut(s) 329, 718
SfaNI GCATC 5 cut(s) 60, 644, 801, 910, 1214
SfcI CTRYAG 1 cut(s) 533
SinI GGWCC 3 cut(s) 167, 1214, 1511
SmiMI CAYNNNNRTG 3 cut(s) 114, 1094, 1241
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 5 cut(s) 98, 347, 949, 1064, 1225
SsiI CCGC 3 cut(s) 49, 359, 675
SspMI CTAG 4 cut(s) 578, 1125, 1146, 1259
StyD4I CCNGG 2 cut(s) 169, 202
StyI CCWWGG 3 cut(s) 186, 316, 679
TaaI ACNGT 5 cut(s) 386, 468, 889, 1351, 1430
TaiI ACGT 1 cut(s) 1548
TaqI TCGA 5 cut(s) 69, 648, 808, 1208, 1229
TasI AATT 5 cut(s) 98, 347, 949, 1064, 1225
TatI WGTACW 4 cut(s) 381, 493, 512, 574
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 3 cut(s) 831, 1255, 1269
Tru1I TTAA 3 cut(s) 1092, 1379, 1412
Tru9I TTAA 3 cut(s) 1092, 1379, 1412
TscAI CASTG 2 cut(s) 694, 1435
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 3 cut(s) 407, 419, 593
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 3 cut(s) 832, 1112, 1432
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 2 cut(s) 694, 1435
VpaK11BI GGWCC 3 cut(s) 167, 1214, 1511
XapI RAATTY 1 cut(s) 1225
XceI RCATGY 3 cut(s) 164, 807, 933
XcmI CCANNNNNNNNNTGG 3 cut(s) 686, 706, 1487
XspI CTAG 4 cut(s) 578, 1125, 1146, 1259
ZrmI AGTACT 4 cut(s) 383, 495, 514, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.