RLG00000011701

Metal transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
11957576 .. 11961975
4400 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011701

Sequence Viewer

Length: 1485 bp
ATGGAAAGCCAGCAACAGAGAATAGGTGTTGGTGAGCGTGGAAGCAACCGCATCTATTCAGCAGAGGTCGAGACACCACCACCCTCCGATATCAAACAATTTGATGACCATCATGATGATCCTGAAAATCAGAAGCCTGGATGGAGGAAGTTTCTGGCACATGTAGGACCTGGGTTTCTCGTCTCCTTGGCTTACCTTGACCCCGGCAACTTGGAAACTGATCTGCAAGCTGGAGCCAATCACCAATACGAGCTACTTTGGGTTATACTCATCGGATTGATCTTCGCTCTCATAATCCAATCTCTGTCAGCAAACCTTGGCGTGAGCACAGGCAAACATTTGTCGGAGTTATGTAAGGCGGAGTACCCACCATTTGTCAAGTACTGTCTCTGGTTGCTTGCAGAGATTGCCGTCATAGCTGCTGATATACCCGAAGTGATTGGAACAGCGTTTGCTCTAAATATACTGTTCAACATTCCAGTTTGGACTGGAGTACTATTGACTGGTTTCAGTACTCTCCTTCTTCTTGGCCTGCAGAGATATGGGGTTAGGAAGCTGGAAATGCTGATAGCAGTACTAGTGTTTGTAATGGCAGCCTGTTTCTTTGGTGAAATGGGTTATGTGAAGCCTCCTGCATCCGGTGTGATCGAAGGAATGTTTGTCCCCAAGCTCAGCGGCCAAGGAGCCACCGGTGACGCCATCGCCCTCTTGGGTGCCCTTGATGCATGTCGATATTTCTTGATAGAAAGTGGATTTGCATTATTTATAGCATTTCTAATCAATGTTGCCATTGTCTCTGTGTCGGGAACCGTTTGTCACGGCGATAACCTCTCTGACAAGGATGCTAAAACATGTAACGATCTGACACTCAATTCTGCTTCTTTTCTTCTCCAGAATGTGTTGGGAAAGTCAAGCAAAGTCATCTATGCTATTGCACTATTAGCCTCAGGACAAAGCTCAACCATTACAGGCACTTACGCAGGACAATTTGTCATGCAGGGTTTCTTGGACATTAAGATGAGAAAATGGCTTAGAAACCTGATGACTAGGTGCATTGCCATTACACCTAGTCTTGTTGTTTCCATCATCGGTGGGCCTTCAGGAGCAGGGAGACTCATTATCATTGCATCGATGGGACCTCACAAGAATTCGATCTACATCATTGTGGTATCATGGATTCTAGGGATGGGAATCATTGGAATCAACATCTATTACCTCAGCACAGGCTTTGTGGGCTGGATAATCCACAGCAGTCTCCCCAAAGTTGCAACTGTGTTTATTGGGATCTTGGTGTTCCCCTTAATGGCAATTTACATCCTTGCAGTCCTTTACTTAACTGTCAGAAAAGACACTGTTGTAACATTCATTGAGCCAACAAAGAATGACCCAGCGGCCCAGAACCAAATGGAAAGTGGGATCACCAACACGCATGGACCTCCTGTACCTTTCAGGGAGGATTTGGCTGACGTTCCTCTACCAGAATAG

Protein Analysis

495

Amino Acids

53.43

Weight (kDa)

5.88

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 72 - 239 2.7e-55 Natural resistance-associated macrophage protein-like
Nramp PF01566 242 - 377 9e-31 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 713
AciI CCGC 4 cut(s) 49, 359, 675, 1391
AclWI GGATC 3 cut(s) 113, 1292, 1424
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 1 cut(s) 1147
AcuI CTGAAG 1 cut(s) 1083
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 6 cut(s) 365, 383, 495, 514, 576, 1443
AfiI CCNNNNNNNGG 2 cut(s) 638, 1303
AflIII ACRYGT 2 cut(s) 160, 851
AgeI ACCGGT 1 cut(s) 689
AgsI TTSAA 1 cut(s) 472
AhdI GACNNNNNGTC 1 cut(s) 989
AhlI ACTAGT 1 cut(s) 577
AjnI CCWGG 2 cut(s) 136, 169
AluBI AGCT 6 cut(s) 230, 253, 419, 556, 670, 957
AluI AGCT 6 cut(s) 230, 253, 419, 556, 670, 957
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 6 cut(s) 65, 187, 392, 799, 1105, 1259
AlwI GGATC 3 cut(s) 113, 1292, 1424
AoxI GGCC 4 cut(s) 529, 676, 1094, 1392
ApeKI GCWGC 2 cut(s) 419, 593
ApoI RAATTY 1 cut(s) 1147
AsiGI ACCGGT 1 cut(s) 689
AspS9I GGNCC 5 cut(s) 167, 1094, 1136, 1393, 1433
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 5 cut(s) 44, 233, 620, 704, 1411
AvaII GGWCC 3 cut(s) 167, 1136, 1433
AxyI CCTNAGG 1 cut(s) 946
BaeGI GKGCMC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 1217
BbvI GCAGC 2 cut(s) 406, 605
BccI CCATC 6 cut(s) 117, 135, 707, 1091, 1126, 1180
BceAI ACGGC 2 cut(s) 395, 835
BciT130I CCWGG 2 cut(s) 138, 171
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 6 cut(s) 65, 187, 392, 799, 1105, 1259
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 4 cut(s) 578, 1047, 1068, 1181
BfmI CTRYAG 1 cut(s) 533
BisI GCNGC 4 cut(s) 420, 594, 676, 1392
BlpI GCTNAGC 1 cut(s) 671
BlsI GCNGC 4 cut(s) 421, 595, 677, 1393
BmcAI AGTACT 4 cut(s) 383, 495, 514, 576
Bme1390I CCNGG 3 cut(s) 138, 171, 204
Bme18I GGWCC 3 cut(s) 167, 1136, 1433
BmeRI GACNNNNNGTC 1 cut(s) 989
BmgT120I GGNCC 5 cut(s) 167, 1094, 1136, 1393, 1433
BmiI GGNNCC 5 cut(s) 235, 685, 715, 808, 1137
BmrFI CCNGG 3 cut(s) 138, 171, 204
BmsI GCATC 5 cut(s) 60, 644, 712, 832, 1136
BpmI CTGGAG 3 cut(s) 252, 510, 875
Bpu10I CCTNAGC 1 cut(s) 1217
Bpu1102I GCTNAGC 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 1130
BsaBI GATNNNNATC 3 cut(s) 108, 1157, 1190
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 5 cut(s) 170, 186, 202, 316, 679
BsaWI WCCGGW 2 cut(s) 638, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 1303
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 3 cut(s) 479, 493, 508
Bse21I CCTNAGG 1 cut(s) 946
Bse3DI GCAATG 2 cut(s) 1053, 1122
Bse8I GATNNNNATC 3 cut(s) 108, 1157, 1190
BseBI CCWGG 2 cut(s) 138, 171
BseCI ATCGAT 1 cut(s) 1130
BseDI CCNNGG 5 cut(s) 170, 186, 202, 316, 679
BseGI GGATG 5 cut(s) 146, 635, 847, 1191, 1314
BseJI GATNNNNATC 3 cut(s) 108, 1157, 1190
BseLI CCNNNNNNNGG 2 cut(s) 638, 1303
BseMI GCAATG 2 cut(s) 1053, 1122
BseMII CTCAG 3 cut(s) 685, 960, 1231
BseNI ACTGG 3 cut(s) 479, 493, 508
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 2 cut(s) 406, 605
BseYI CCCAGC 1 cut(s) 1387
BshFI GGCC 4 cut(s) 531, 678, 1096, 1394
BshNI GGYRCC 1 cut(s) 713
BshTI ACCGGT 1 cut(s) 689
BshVI ATCGAT 1 cut(s) 1130
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 3 cut(s) 204, 639, 690
BslFI GGGAC 2 cut(s) 647, 1149
BslI CCNNNNNNNGG 2 cut(s) 638, 1303
BsmAI GTCTC 6 cut(s) 65, 187, 392, 799, 1105, 1259
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 647, 1149
BsnI GGCC 4 cut(s) 531, 678, 1096, 1394
Bsp1286I GDGCHC 2 cut(s) 329, 718
Bsp143I GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
Bsp1720I GCTNAGC 1 cut(s) 671
BspACI CCGC 4 cut(s) 49, 359, 675, 1391
BspANI GGCC 4 cut(s) 531, 678, 1096, 1394
BspCNI CTCAG 3 cut(s) 684, 959, 1230
BspDI ATCGAT 1 cut(s) 1130
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 235, 685, 715, 808, 1137
BspMAI CTGCAG 1 cut(s) 537
BspPI GGATC 3 cut(s) 113, 1292, 1424
BspT107I GGYRCC 1 cut(s) 713
BsrDI GCAATG 2 cut(s) 1053, 1122
BsrFI RCCGGY 1 cut(s) 689
BsrI ACTGG 3 cut(s) 479, 493, 508
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 5 cut(s) 170, 186, 202, 316, 679
BssMI GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 3 cut(s) 186, 316, 679
Bst2UI CCWGG 2 cut(s) 138, 171
Bst4CI ACNGT 6 cut(s) 386, 468, 811, 1273, 1339, 1354
BstACI GRCGYC 1 cut(s) 696
BstAPI GCANNNNNTGC 1 cut(s) 407
BstC8I GCNNGC 4 cut(s) 11, 228, 399, 533
BstDEI CTNAG 4 cut(s) 671, 946, 1031, 1217
BstF5I GGATG 5 cut(s) 146, 635, 847, 1191, 1314
BstKTI GATC 8 cut(s) 121, 223, 282, 648, 862, 1155, 1287, 1419
BstMAI GTCTC 6 cut(s) 65, 187, 392, 799, 1105, 1259
BstMBI GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
BstMWI GCNNNNNNNGC 6 cut(s) 407, 416, 562, 722, 941, 1233
BstNI CCWGG 2 cut(s) 138, 171
BstNSI RCATGY 3 cut(s) 164, 729, 855
BstSCI CCNGG 3 cut(s) 136, 169, 202
BstSFI CTRYAG 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 718
BstV1I GCAGC 2 cut(s) 406, 605
BstX2I RGATCY 1 cut(s) 1284
BstYI RGATCY 1 cut(s) 1284
Bsu15I ATCGAT 1 cut(s) 1130
Bsu36I CCTNAGG 1 cut(s) 946
BsuRI GGCC 4 cut(s) 531, 678, 1096, 1394
BsuTUI ATCGAT 1 cut(s) 1130
BtgZI GCGATG 1 cut(s) 685
BtsCI GGATG 5 cut(s) 146, 635, 847, 1191, 1314
BtsIMutI CAGTG 1 cut(s) 1350
Cac8I GCNNGC 4 cut(s) 11, 228, 399, 533
CciI TCATGA 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 5 cut(s) 167, 1094, 1136, 1393, 1433
ClaI ATCGAT 1 cut(s) 1130
CseI GACGC 1 cut(s) 704
Csp6I GTAC 6 cut(s) 364, 382, 494, 513, 575, 1442
CspAI ACCGGT 1 cut(s) 689
CviAII CATG 7 cut(s) 113, 161, 726, 852, 994, 1173, 1430
CviQI GTAC 6 cut(s) 364, 382, 494, 513, 575, 1442
DdeI CTNAG 4 cut(s) 671, 946, 1031, 1217
DpnI GATC 8 cut(s) 120, 222, 281, 647, 861, 1154, 1286, 1418
DpnII GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
DriI GACNNNNNGTC 1 cut(s) 989
EaeI YGGCCR 1 cut(s) 676
Eam1105I GACNNNNNGTC 1 cut(s) 989
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 3 cut(s) 186, 316, 679
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 167, 1136, 1433
Eco57I CTGAAG 1 cut(s) 1083
Eco81I CCTNAGG 1 cut(s) 946
EcoO109I RGGNCCY 2 cut(s) 167, 1136
EcoRI GAATTC 1 cut(s) 1147
EcoRII CCWGG 2 cut(s) 136, 169
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 186, 316, 679
EcoT22I ATGCAT 1 cut(s) 727
ErhI CCWWGG 3 cut(s) 186, 316, 679
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 7 cut(s) 116, 164, 729, 855, 997, 1176, 1433
FaqI GGGAC 2 cut(s) 647, 1149
FatI CATG 7 cut(s) 112, 160, 725, 851, 993, 1172, 1429
Fnu4HI GCNGC 4 cut(s) 420, 594, 676, 1392
FokI GGATG 5 cut(s) 153, 622, 854, 1198, 1301
Fsp4HI GCNGC 4 cut(s) 420, 594, 676, 1392
FspBI CTAG 4 cut(s) 578, 1047, 1068, 1181
GluI GCNGC 4 cut(s) 420, 594, 676, 1392
GsaI CCCAGC 1 cut(s) 1391
GsuI CTGGAG 3 cut(s) 252, 510, 875
HaeIII GGCC 4 cut(s) 531, 678, 1096, 1394
HapII CCGG 3 cut(s) 204, 639, 690
HgaI GACGC 1 cut(s) 704
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 7 cut(s) 116, 164, 729, 855, 997, 1176, 1433
HinfI GANTC 4 cut(s) 1113, 1177, 1191, 1200
HpaII CCGG 3 cut(s) 204, 639, 690
HphI GGTGA 5 cut(s) 44, 233, 620, 704, 1411
Hpy188I TCNGA 7 cut(s) 88, 132, 275, 346, 835, 864, 1343
Hpy188III TCNNGA 8 cut(s) 70, 113, 122, 739, 804, 892, 948, 1101
HpyAV CCTTC 3 cut(s) 530, 644, 1107
HpyCH4III ACNGT 6 cut(s) 386, 468, 811, 1273, 1339, 1354
HpyCH4IV ACGT 1 cut(s) 1467
HpyF10VI GCNNNNNNNGC 6 cut(s) 407, 416, 562, 722, 941, 1233
HpyF3I CTNAG 4 cut(s) 671, 946, 1031, 1217
HpySE526I ACGT 1 cut(s) 1467
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 7 cut(s) 116, 164, 729, 855, 997, 1176, 1433
Kzo9I GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
LmnI GCTCC 3 cut(s) 233, 683, 1103
Lsp1109I GCAGC 2 cut(s) 406, 605
LweI GCATC 5 cut(s) 60, 644, 712, 832, 1136
MaeI CTAG 4 cut(s) 578, 1047, 1068, 1181
MaeII ACGT 1 cut(s) 1467
MaeIII GTNAC 4 cut(s) 692, 815, 854, 1357
MalI GATC 8 cut(s) 120, 222, 281, 647, 861, 1154, 1286, 1418
MboI GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
MboII GAAGA 3 cut(s) 274, 515, 878
MflI RGATCY 1 cut(s) 1284
MhlI GDGCHC 2 cut(s) 329, 718
MluCI AATT 5 cut(s) 98, 871, 986, 1147, 1308
MlyI GAGTC 1 cut(s) 1107
MmeI TCCRAC 1 cut(s) 324
Mph1103I ATGCAT 1 cut(s) 727
MseI TTAA 3 cut(s) 1014, 1301, 1334
MslI CAYNNNNRTG 3 cut(s) 114, 1016, 1163
MspA1I CMGCKG 2 cut(s) 675, 1391
MspI CCGG 3 cut(s) 204, 639, 690
MspR9I CCNGG 3 cut(s) 138, 171, 204
MvaI CCWGG 2 cut(s) 138, 171
MwoI GCNNNNNNNGC 6 cut(s) 407, 416, 562, 722, 941, 1233
NciI CCSGG 1 cut(s) 204
NdeII GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
NlaIII CATG 7 cut(s) 116, 164, 729, 855, 997, 1176, 1433
NlaIV GGNNCC 5 cut(s) 235, 685, 715, 808, 1137
NmuCI GTSAC 2 cut(s) 692, 815
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 3 cut(s) 164, 729, 855
PagI TCATGA 1 cut(s) 112
PciI ACATGT 2 cut(s) 160, 851
PfeI GAWTC 3 cut(s) 1177, 1191, 1200
PinAI ACCGGT 1 cut(s) 689
PkrI GCNGC 4 cut(s) 421, 595, 677, 1393
PleI GAGTC 1 cut(s) 1107
PpsI GAGTC 1 cut(s) 1107
PpuMI RGGWCCY 2 cut(s) 167, 1136
PscI ACATGT 2 cut(s) 160, 851
Psp5II RGGWCCY 2 cut(s) 167, 1136
Psp6I CCWGG 2 cut(s) 136, 169
PspFI CCCAGC 1 cut(s) 1387
PspGI CCWGG 2 cut(s) 136, 169
PspN4I GGNNCC 5 cut(s) 235, 685, 715, 808, 1137
PspPI GGNCC 5 cut(s) 167, 1094, 1136, 1393, 1433
PspPPI RGGWCCY 2 cut(s) 167, 1136
PstI CTGCAG 1 cut(s) 537
PsuI RGATCY 1 cut(s) 1284
RsaI GTAC 6 cut(s) 365, 383, 495, 514, 576, 1443
RsaNI GTAC 6 cut(s) 364, 382, 494, 513, 575, 1442
RseI CAYNNNNRTG 3 cut(s) 114, 1016, 1163
SaqAI TTAA 3 cut(s) 1014, 1301, 1334
SatI GCNGC 4 cut(s) 420, 594, 676, 1392
Sau3AI GATC 8 cut(s) 118, 220, 279, 645, 859, 1152, 1284, 1416
Sau96I GGNCC 5 cut(s) 167, 1094, 1136, 1393, 1433
ScaI AGTACT 4 cut(s) 383, 495, 514, 576
SchI GAGTC 1 cut(s) 1107
ScrFI CCNGG 3 cut(s) 138, 171, 204
SduI GDGCHC 2 cut(s) 329, 718
SfaNI GCATC 5 cut(s) 60, 644, 712, 832, 1136
SfcI CTRYAG 1 cut(s) 533
SgrAI CRCCGGYG 1 cut(s) 689
SinI GGWCC 3 cut(s) 167, 1136, 1433
SmiMI CAYNNNNRTG 3 cut(s) 114, 1016, 1163
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 5 cut(s) 98, 871, 986, 1147, 1308
SsiI CCGC 4 cut(s) 49, 359, 675, 1391
SspMI CTAG 4 cut(s) 578, 1047, 1068, 1181
StyD4I CCNGG 3 cut(s) 136, 169, 202
StyI CCWWGG 3 cut(s) 186, 316, 679
TaaI ACNGT 6 cut(s) 386, 468, 811, 1273, 1339, 1354
TaiI ACGT 1 cut(s) 1470
TaqI TCGA 5 cut(s) 69, 648, 730, 1130, 1151
TasI AATT 5 cut(s) 98, 871, 986, 1147, 1308
TatI WGTACW 4 cut(s) 381, 493, 512, 574
TauI GCSGC 2 cut(s) 678, 1394
TfiI GAWTC 3 cut(s) 1177, 1191, 1200
Tru1I TTAA 3 cut(s) 1014, 1301, 1334
Tru9I TTAA 3 cut(s) 1014, 1301, 1334
TscAI CASTG 1 cut(s) 1357
TseFI GTSAC 2 cut(s) 692, 815
TseI GCWGC 2 cut(s) 419, 593
Tsp45I GTSAC 2 cut(s) 692, 815
TspDTI ATGAA 1 cut(s) 1354
TspRI CASTG 1 cut(s) 1357
VpaK11BI GGWCC 3 cut(s) 167, 1136, 1433
XapI RAATTY 1 cut(s) 1147
XceI RCATGY 3 cut(s) 164, 729, 855
XcmI CCANNNNNNNNNTGG 2 cut(s) 706, 1409
XspI CTAG 4 cut(s) 578, 1047, 1068, 1181
ZrmI AGTACT 4 cut(s) 383, 495, 514, 576
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.