AT1G15960

Metal transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5481665 .. 5486105
4441 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15960.1

Sequence Viewer

Length: 1584 bp
ATGGCGGCTGAAACAGCAAGTGGCAGCAACAGAAGTATCTCAAACTCTCCTCTCATAGAAAACTCTGATTCTAATCAGATTCTTGTCCCTGAGAAAAAGAGCTGGAAAAACTTCTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTTTGAAACTGATCTGCAATCAGGAGCTCAATACAAGTATGAGTTACTCTGGATCATATTGGTGGCATCATGTGCAGCTTTAGTGATTCAATCTCTGGCTGCAAATCTTGGTGTTGTCACAGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATGGGTAGTTGCTGAAATCGCTGTAGTAGCTTGTGATATTCCAGAAGTAATTGGAACAGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGATTAGAAAGCTCGAGTTCTTGATCGCTTTTCTTGTGTTCACCATTGCCCTATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAAAAGAAGTCCTCTATGGTCTCTTTGTTCCTCAGTTGAAGGGTAATGGTGCAACTGGTTTAGCGATATCTCTCCTCGGTGCCATGGTTATGCCGCACAATCTCTTTCTCCACTCAGCTTTAGTTCTCTCTAGGAAAATTCCTCGTTCAGTAACCGGCATCAAGGAAGCTTGTCGGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCATTTCTCATCAATGTCTCTGTGATATCAGTGAGTGGTGCAGTTTGTAATGCCTCAGATTTGAGTCCAGAAGATCGAGCTAGTTGCCAAGATTTGGACTTAAACAAAGCTTCATTTCTGCTACGTAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGCAATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATACGTTATGCAGGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTCCTAACCAGATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTGGCTCAGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCTTTGAACTCCCATTTGCTTTAGTCCCACTTCTCAAATTCACAAGCAGTAAAACCAAAATGGGCTCACACGCCAATTCACTTGTGATTTCATCGGTGACTTGGATAATTGGTGGACTTATTATGGGTATAAACATTTACTATCTTGTAAGCAGCTTCATCAAGTTGCTTCTCCATAGTCACATGAACCTTGTAGCCATTGTTTTCTTAGGAGTTCTTGGATTCTCAGGCATTGCCACTTACTTAGCTGCCATCAGTTACCTTGTCCTCCGTAAAAACAGAGAGTCCTCGTCCACACATTTCCTAGACTTCAGTAACTCTCAGACCGAGGAAACACTTCCTAGAGAAGATATTGCCAACATGCAGTTACCTAATAGAGTAGCGGTTATAGGAGACTTAAATTGA

Protein Analysis

527

Amino Acids

57.24

Weight (kDa)

8.03

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 58 - 420 5.8e-120 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 901
AciI CCGC 4 cut(s) 5, 689, 789, 1562
AclI AACGTT 1 cut(s) 936
AclWI GGATC 2 cut(s) 155, 230
AcsI RAATTY 2 cut(s) 732, 1217
AcuI CTGAAG 1 cut(s) 1474
AfaI GTAC 2 cut(s) 326, 475
AfiI CCNNNNNNNGG 1 cut(s) 901
AgsI TTSAA 7 cut(s) 176, 260, 433, 497, 634, 999, 1187
AjnI CCWGG 2 cut(s) 130, 163
Alw21I GWGCWC 2 cut(s) 199, 956
Alw26I GTCTC 4 cut(s) 148, 620, 829, 1566
AlwI GGATC 2 cut(s) 155, 230
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 5 cut(s) 24, 245, 269, 1332, 1427
ApoI RAATTY 2 cut(s) 732, 1217
Asp700I GAANNNNTTC 2 cut(s) 110, 1515
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 538, 1288
AvaI CYCGRG 1 cut(s) 518
BaeI ACNNNNGTAYC 2 cut(s) 19, 52
BanI GGYRCC 1 cut(s) 674
BanII GRGCYC 3 cut(s) 199, 956, 1247
Bbv12I GWGCWC 2 cut(s) 199, 956
BbvI GCAGC 5 cut(s) 36, 256, 257, 1344, 1414
BccI CCATC 1 cut(s) 1439
BcgI CGANNNNNNTGC 2 cut(s) 873, 907
BciT130I CCWGG 2 cut(s) 132, 165
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 4 cut(s) 148, 620, 829, 1566
BfaI CTAG 6 cut(s) 488, 726, 888, 1058, 1484, 1521
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 7 cut(s) 6, 25, 246, 270, 689, 1333, 1428
BlpI GCTNAGC 1 cut(s) 1135
BlsI GCNGC 7 cut(s) 7, 26, 247, 271, 690, 1334, 1429
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 3 cut(s) 132, 165, 440
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 3 cut(s) 336, 676, 1144
BmrFI CCNGG 3 cut(s) 132, 165, 440
BmsI GCATC 3 cut(s) 245, 762, 1079
BpmI CTGGAG 1 cut(s) 1161
Bpu1102I GCTNAGC 1 cut(s) 1135
BpuMI CCSGG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 6 cut(s) 130, 330, 670, 678, 1064, 1506
BsaWI WCCGGW 2 cut(s) 986, 1007
Bsc4I CCNNNNNNNGG 1 cut(s) 901
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 3 cut(s) 549, 1161, 1410
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 132, 165
BseDI CCNNGG 6 cut(s) 130, 330, 670, 678, 1064, 1506
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 901
BseMI GCAATG 3 cut(s) 549, 1161, 1410
BseMII CTCAG 9 cut(s) 81, 312, 641, 723, 876, 1084, 1149, 1419, 1514
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 2 cut(s) 39, 659
BseXI GCAGC 5 cut(s) 36, 256, 257, 1344, 1414
BsgI GTGCAG 2 cut(s) 264, 867
BshFI GGCC 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 674
BsiHKAI GWGCWC 2 cut(s) 199, 956
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 5 cut(s) 440, 750, 987, 1008, 1146
BslFI GGGAC 2 cut(s) 71, 1190
BslI CCNNNNNNNGG 1 cut(s) 901
BsmAI GTCTC 4 cut(s) 148, 620, 829, 1566
BsmFI GGGAC 2 cut(s) 71, 1190
BsnI GGCC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 3 cut(s) 199, 956, 1247
Bsp143I GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
Bsp1720I GCTNAGC 1 cut(s) 1135
Bsp19I CCATGG 2 cut(s) 678, 1064
BspACI CCGC 4 cut(s) 5, 689, 789, 1562
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 9 cut(s) 82, 313, 640, 722, 875, 1083, 1148, 1418, 1513
BspLI GGNNCC 3 cut(s) 336, 676, 1144
BspPI GGATC 2 cut(s) 155, 230
BspT107I GGYRCC 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 620
BsrDI GCAATG 3 cut(s) 549, 1161, 1410
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 1 cut(s) 655
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 6 cut(s) 130, 330, 670, 678, 1064, 1506
BssMI GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
BssT1I CCWWGG 3 cut(s) 330, 678, 1064
Bst2UI CCWGG 2 cut(s) 132, 165
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 932
BstC8I GCNNGC 1 cut(s) 981
BstDSI CCRYGG 2 cut(s) 678, 1064
BstKTI GATC 7 cut(s) 163, 184, 225, 531, 883, 1116, 1176
BstMAI GTCTC 4 cut(s) 148, 620, 829, 1566
BstMBI GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
BstMWI GCNNNNNNNGC 5 cut(s) 14, 242, 368, 377, 980
BstNI CCWGG 2 cut(s) 132, 165
BstNSI RCATGY 2 cut(s) 427, 1543
BstSCI CCNGG 3 cut(s) 130, 163, 438
BstSFI CTRYAG 1 cut(s) 372
BstSNI TACGTA 1 cut(s) 932
BstV1I GCAGC 5 cut(s) 36, 256, 257, 1344, 1414
BstXI CCANNNNNNTGG 1 cut(s) 1093
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 2 cut(s) 678, 1064
BtsIMutI CAGTG 1 cut(s) 843
Cac8I GCNNGC 1 cut(s) 981
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 325, 474
CviAII CATG 6 cut(s) 240, 424, 679, 1065, 1363, 1540
CviQI GTAC 2 cut(s) 325, 474
DpnI GATC 7 cut(s) 162, 183, 224, 530, 882, 1115, 1175
DpnII GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
DraI TTTAAA 1 cut(s) 420
Ecl136II GAGCTC 2 cut(s) 197, 954
Eco105I TACGTA 1 cut(s) 932
Eco130I CCWWGG 3 cut(s) 330, 678, 1064
Eco24I GRGCYC 3 cut(s) 199, 956, 1247
Eco31I GGTCTC 1 cut(s) 620
Eco32I GATATC 2 cut(s) 663, 834
Eco53kI GAGCTC 2 cut(s) 197, 954
Eco57I CTGAAG 1 cut(s) 1474
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 2 cut(s) 197, 954
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 130, 163
EcoRV GATATC 2 cut(s) 663, 834
EcoT14I CCWWGG 3 cut(s) 330, 678, 1064
EcoT38I GRGCYC 3 cut(s) 199, 956, 1247
ErhI CCWWGG 3 cut(s) 330, 678, 1064
FaeI CATG 6 cut(s) 243, 427, 682, 1068, 1366, 1543
FaqI GGGAC 2 cut(s) 71, 1190
FatI CATG 6 cut(s) 239, 423, 678, 1064, 1362, 1539
FauNDI CATATG 1 cut(s) 1015
Fnu4HI GCNGC 7 cut(s) 6, 25, 246, 270, 689, 1333, 1428
FriOI GRGCYC 3 cut(s) 199, 956, 1247
Fsp4HI GCNGC 7 cut(s) 6, 25, 246, 270, 689, 1333, 1428
FspBI CTAG 6 cut(s) 488, 726, 888, 1058, 1484, 1521
GluI GCNGC 7 cut(s) 6, 25, 246, 270, 689, 1333, 1428
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 1 cut(s) 129
HapII CCGG 5 cut(s) 440, 750, 987, 1008, 1146
Hin1II CATG 6 cut(s) 243, 427, 682, 1068, 1366, 1543
HindIII AAGCTT 2 cut(s) 762, 915
HinfI GANTC 7 cut(s) 68, 79, 256, 481, 871, 1401, 1463
HpaII CCGG 5 cut(s) 440, 750, 987, 1008, 1146
HphI GGTGA 2 cut(s) 538, 1288
Hpy166II GTNNAC 3 cut(s) 546, 1295, 1473
Hpy188I TCNGA 6 cut(s) 67, 78, 865, 993, 1073, 1503
Hpy188III TCNNGA 6 cut(s) 192, 220, 392, 526, 875, 1046
Hpy8I GTNNAC 3 cut(s) 546, 1295, 1473
HpyAV CCTTC 1 cut(s) 628
HpyCH4IV ACGT 3 cut(s) 931, 936, 1029
HpyCH4V TGCA 8 cut(s) 187, 245, 272, 647, 848, 968, 1036, 1543
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 242, 368, 377, 980
HpySE526I ACGT 3 cut(s) 931, 936, 1029
Hsp92II CATG 6 cut(s) 243, 427, 682, 1068, 1366, 1543
Kzo9I GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
LmnI GCTCC 3 cut(s) 194, 951, 1142
Lsp1109I GCAGC 5 cut(s) 36, 256, 257, 1344, 1414
LweI GCATC 3 cut(s) 245, 762, 1079
MaeI CTAG 6 cut(s) 488, 726, 888, 1058, 1484, 1521
MaeII ACGT 3 cut(s) 931, 936, 1029
MaeIII GTNAC 9 cut(s) 213, 286, 745, 932, 1276, 1358, 1436, 1493, 1545
MalI GATC 7 cut(s) 162, 183, 224, 530, 882, 1115, 1175
MboI GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
MboII GAAGA 5 cut(s) 106, 449, 476, 890, 1538
MfeI CAATTG 2 cut(s) 147, 969
MhlI GDGCHC 3 cut(s) 199, 956, 1247
MluCI AATT 8 cut(s) 147, 399, 732, 969, 1217, 1255, 1287, 1579
MlyI GAGTC 2 cut(s) 880, 1472
MroXI GAANNNNTTC 2 cut(s) 110, 1515
MseI TTAA 5 cut(s) 419, 908, 1052, 1154, 1577
MslI CAYNNNNRTG 2 cut(s) 230, 683
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 5 cut(s) 440, 750, 987, 1008, 1146
MspR9I CCNGG 3 cut(s) 132, 165, 440
MunI CAATTG 2 cut(s) 147, 969
MvaI CCWGG 2 cut(s) 132, 165
MwoI GCNNNNNNNGC 5 cut(s) 14, 242, 368, 377, 980
NciI CCSGG 1 cut(s) 440
NcoI CCATGG 2 cut(s) 678, 1064
NdeI CATATG 1 cut(s) 1015
NdeII GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
NlaIII CATG 6 cut(s) 243, 427, 682, 1068, 1366, 1543
NlaIV GGNNCC 3 cut(s) 336, 676, 1144
NmuCI GTSAC 3 cut(s) 286, 1276, 1358
NspI RCATGY 2 cut(s) 427, 1543
PaeR7I CTCGAG 1 cut(s) 518
PdmI GAANNNNTTC 2 cut(s) 110, 1515
PfeI GAWTC 5 cut(s) 68, 79, 256, 481, 1401
PflMI CCANNNNNTGG 1 cut(s) 901
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 7 cut(s) 7, 26, 247, 271, 690, 1334, 1429
PleI GAGTC 2 cut(s) 879, 1471
PpsI GAGTC 2 cut(s) 879, 1471
Ppu21I YACGTR 1 cut(s) 932
Psp124BI GAGCTC 2 cut(s) 199, 956
Psp1406I AACGTT 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 130, 163
PspGI CCWGG 2 cut(s) 130, 163
PspN4I GGNNCC 3 cut(s) 336, 676, 1144
PspPI GGNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 2 cut(s) 326, 475
RsaNI GTAC 2 cut(s) 325, 474
RseI CAYNNNNRTG 2 cut(s) 230, 683
SacI GAGCTC 2 cut(s) 199, 956
SaqAI TTAA 5 cut(s) 419, 908, 1052, 1154, 1577
SatI GCNGC 7 cut(s) 6, 25, 246, 270, 689, 1333, 1428
Sau3AI GATC 7 cut(s) 160, 181, 222, 528, 880, 1113, 1173
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 2 cut(s) 880, 1472
ScrFI CCNGG 3 cut(s) 132, 165, 440
SduI GDGCHC 3 cut(s) 199, 956, 1247
SfaNI GCATC 3 cut(s) 245, 762, 1079
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 518
SmiMI CAYNNNNRTG 2 cut(s) 230, 683
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SnaBI TACGTA 1 cut(s) 932
Sse9I AATT 8 cut(s) 147, 399, 732, 969, 1217, 1255, 1287, 1579
SsiI CCGC 4 cut(s) 5, 689, 789, 1562
SspMI CTAG 6 cut(s) 488, 726, 888, 1058, 1484, 1521
SstI GAGCTC 2 cut(s) 199, 956
StyD4I CCNGG 3 cut(s) 130, 163, 438
StyI CCWWGG 3 cut(s) 330, 678, 1064
TaiI ACGT 3 cut(s) 934, 939, 1032
TaqI TCGA 3 cut(s) 519, 883, 1169
TaqII GACCGA 1 cut(s) 1520
TasI AATT 8 cut(s) 147, 399, 732, 969, 1217, 1255, 1287, 1579
TatI WGTACW 2 cut(s) 324, 473
TauI GCSGC 2 cut(s) 8, 691
TfiI GAWTC 5 cut(s) 68, 79, 256, 481, 1401
Tru1I TTAA 5 cut(s) 419, 908, 1052, 1154, 1577
Tru9I TTAA 5 cut(s) 419, 908, 1052, 1154, 1577
TscAI CASTG 1 cut(s) 843
TseFI GTSAC 3 cut(s) 286, 1276, 1358
TseI GCWGC 5 cut(s) 24, 245, 269, 1332, 1427
Tsp45I GTSAC 3 cut(s) 286, 1276, 1358
TspDTI ATGAA 5 cut(s) 566, 909, 1260, 1327, 1379
TspGWI ACGGA 1 cut(s) 1439
TspRI CASTG 1 cut(s) 843
Van91I CCANNNNNTGG 1 cut(s) 901
XapI RAATTY 2 cut(s) 732, 1217
XceI RCATGY 2 cut(s) 427, 1543
XhoI CTCGAG 1 cut(s) 518
XmnI GAANNNNTTC 2 cut(s) 110, 1515
XspI CTAG 6 cut(s) 488, 726, 888, 1058, 1484, 1521
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.