Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

67642055 .. 67642404

Gene Structure 350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGAAAACATAACAAGGAATGGAGAGACGAGGACCGTGCTCCTAGTGTTGTTTCCAAGTCCAAGCATGTGCCTGGTCTTAAGATTCCAAATGTTGTGTTGGGTGACATTCTGATTTCTGTTGAGATGGTGGCAAGGCAAGCAGAGCAAAGAGGCCACACACTTCTTGATGAGATGTGCCTTCTCATGGTAGGACTACTAGTGCTTATATTTCTCTTGCTATATGTAACATTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

79

Amino Acids

9.01

Weight (kDa)

7.84

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbeY	PF02130	1 - 64	5.4e-10	Endoribonuclease YbeY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflII	CTTAAG	1 cut(s)	80
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	43
BccI	CCATC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	21
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	2 cut(s)	45, 200
BfrI	CTTAAG	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 145
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	2 cut(s)	68, 187
CviJI	RGCY	1 cut(s)	156
CviKI_1	RGCY	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	71, 190
FaiI	YATR	6 cut(s)	12, 69, 188, 209, 223, 225
FatI	CATG	2 cut(s)	67, 186
FspBI	CTAG	2 cut(s)	45, 200
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	71, 190
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 145
Hsp92II	CATG	2 cut(s)	71, 190
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	2 cut(s)	60, 87
MaeI	CTAG	2 cut(s)	45, 200
MaeIII	GTNAC	2 cut(s)	104, 226
MhlI	GDGCHC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	25, 146
MseI	TTAA	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	140, 145
NlaIII	CATG	2 cut(s)	71, 190
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	45, 200
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	2 cut(s)	45, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.