RchiOBHm_Chr5g0058321

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018914
Physical Location & Seq
Reverse (-)
62513025 .. 62514917
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33500

Sequence Viewer

Length: 315 bp
ATGGCAAAAAATTCCCTACATTCAAATTCTCGATCACCACCAATAACGTCATCCACCACAGCCATACTCACGCTCAACAACTTCAGCCAAGGCGGTGACCCAACGGAGGATGATGAGAAGTTCCACAAGAATAGCGAGTTGGTTGCGGCTTCCATTACTAGAATCACGGCAAGTGATGGGAGGAGTGTAGAGGCAAAAATAGCGGACGAATGTGATTCGCTTCATTGTTGTGATAGAGAGCATGCAGGTCAGCCGCCGTGTGGGAGCAAATATTGGCGCCGGGTATGCGGCTGTGTGGGACTCTTTGGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.19

Weight (kDa)

6.03

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 9 - 89 4.1e-12 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018914)

Species Orthologous Gene IDs
prunus_persica Prupe.6G105500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058291 RchiOBHm_Chr5g0058321
rosa_laevigata RLG00000035210 RLG00000035211
rosa_roxburghii Rroxscaffold_1G00022240 Rroxscaffold_1G00022260
rosa_rugosa Rorug05G0313000
rosa_samantha Rh5BG392100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 276
AciI CCGC 5 cut(s) 93, 146, 203, 254, 288
AcsI RAATTY 2 cut(s) 10, 25
AcuI CTGAAG 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 106, 260
AgsI TTSAA 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
ApoI RAATTY 2 cut(s) 10, 25
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 27, 107
AvaII GGWCC 1 cut(s) 309
BanI GGYRCC 1 cut(s) 276
BccI CCATC 1 cut(s) 170
BceAI ACGGC 2 cut(s) 183, 241
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcnI CCSGG 1 cut(s) 281
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 147, 254, 289
BlsI GCNGC 3 cut(s) 148, 255, 290
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 2 cut(s) 278, 310
BmrFI CCNGG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 260
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 50, 115
BseLI CCNNNNNNNGG 2 cut(s) 106, 260
BseRI GAGGAG 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 106, 260
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 5 cut(s) 93, 146, 203, 254, 288
BspLI GGNNCC 2 cut(s) 278, 310
BspMI ACCTGC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 2 cut(s) 50, 115
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 200, 285
BstNSI RCATGY 1 cut(s) 245
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 50, 115
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 309
CviAII CATG 1 cut(s) 242
CviJI RGCY 5 cut(s) 62, 87, 149, 253, 291
CviKI_1 RGCY 5 cut(s) 62, 87, 149, 253, 291
DinI GGCGCC 1 cut(s) 278
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 67
Eco91I GGTNACC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 278
EheI GGCGCC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 65, 243, 286
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 147, 254, 289
FokI GGATG 2 cut(s) 37, 122
Fsp4HI GCNGC 3 cut(s) 147, 254, 289
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 147, 254, 289
HaeII RGCGCY 1 cut(s) 280
HapII CCGG 1 cut(s) 280
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 3 cut(s) 162, 215, 300
HpaII CCGG 1 cut(s) 280
HphI GGTGA 2 cut(s) 27, 107
Hpy188III TCNNGA 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 285
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 277
KasI GGCGCC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 2 cut(s) 231, 293
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MluCI AATT 2 cut(s) 10, 25
Mly113I GGCGCC 1 cut(s) 277
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 3 cut(s) 100, 174, 184
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 200, 285
NarI GGCGCC 1 cut(s) 277
NciI CCSGG 1 cut(s) 281
NdeII GATC 1 cut(s) 32
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 278, 310
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 162, 215
PkrI GCNGC 3 cut(s) 148, 255, 290
PleI GAGTC 1 cut(s) 294
PluTI GGCGCC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 294
PpuMI RGGWCCY 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 309
PspEI GGTNACC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 278, 310
PspPI GGNCC 1 cut(s) 309
PspPPI RGGWCCY 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 228
SatI GCNGC 3 cut(s) 147, 254, 289
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 281
SetI ASST 3 cut(s) 50, 250, 314
SfoI GGCGCC 1 cut(s) 278
SinI GGWCC 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 228
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 10, 25
SsiI CCGC 5 cut(s) 93, 146, 203, 254, 288
SspDI GGCGCC 1 cut(s) 276
SspI AATATT 1 cut(s) 272
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 31
TasI AATT 2 cut(s) 10, 25
TauI GCSGC 3 cut(s) 149, 256, 291
TfiI GAWTC 2 cut(s) 162, 215
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 2 cut(s) 10, 25
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.