Prupe.6G151600_v2.0.a1

Double-stranded RNA binding motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016795
Physical Location & Seq
Reverse (-)
13143873 .. 13146393
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G151600.1

Sequence Viewer

Length: 1122 bp
ATGTACAAGAGTAAGCTGCAGGAGCTGTGCCATGGGAAGAAGTGGGGGTTGCCAAGATACACGACCATGAAGGATGGACCGGATCACAACCCTGCCTTCAAGGCCTCTGTATCTGTAAATGGCTTCTCCTTTGACTCGCCTGCTGCTTGCAAATCTTCCAAAAAAGCGCAGAACCAAGCCGCCATGCTCGCTTTCCTCCACTTCACCTCTCCACCTTCTTCTTTTTCTTCTGTTGAGCCTACTGTTACAGCTGATCATGAGCATACTATTGAAAGCAAAGAGTTCTTCAACACTTTGAAGGGGCCAGAGCATGCGGCTGCGAACGCTGTTTCAATGTCATCGTCACAAGACGGTGCCCAAACCAGTGTTGAATCTGGTCATTGCAAGAATCTCTTACAGGAGTTAGCTCAGAGAGAAGGATTTTACATGCCACAATATAAAACTGCGAGATCCGGTGCATCTCACCTGCCAACGTTCTCCTCCACTGTGGAAGTTGAAGGAGAGGAATTCTATGGGAAAGCAGGGAAATCCAAGAAACAGGCAGAGCTGAGTGCTGCTAAAGTTGCCTACATTGCTTTAAAAGAGCGTGGATTGAGCCGGGCTACTGAGATAACTTCCTGCCATCTGAGAGAAGGTGCTCTCAAGACCACTCAAAGCTCTGACTTGAGAATGACTGTTGATTCAGTCAAGAATCTCATACATGAAGAACAATTGGTTTCATCTCCAGATATCAAGTATGAGGAATGTACTAAACAAATGAAAGGCACATTACACGATTTATCAGCCAACGCCAATCTCGAAGCTGAGGTCTGTGATTCATTTCAAGCAGTACTAGAAATGGATAACATAAAAGAAACCGGAAATCCTTCTTCATGCTCTGAATTGATGTTCCCTTCAACTGAAGAAAGCCCTTCCTCGCCAGCATTTATACAACCCAATCTTCCTGCTGTCACAAATGTAGGGATAGGTACAGGGGTGAGGAGTTACTTGCTGTGCAACAGGGTTAGAGTTTACACACAATTTCCTGATATTGCATTCCCTAATCGCATAACGGTGCTGCCCGTTAGTGATGACAAGTGGGTGGCTTTCAGGTTGGAGTTCCCAAATGAAGAAAGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

374

Amino Acids

40.91

Weight (kDa)

5.92

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016795)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27052
malus_domestica MD11G1178800.v1.1
prunus_persica Prupe.6G151600_v2.0.a1 Prupe.6G151600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0049631
rosa_laevigata RLG00000034628
rosa_multiflora Rmu_sc0013777.1_g000008
rosa_roxburghii Rroxscaffold_1G00032040
rosa_rugosa Rorug05G0249300
rosa_samantha Rh5AG325800 Rh5BG337100 Rh5CG361800 Rh5DG349300
rosa_wichuraiana Rw5G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 474
Acc36I ACCTGC 1 cut(s) 474
AccB1I GGYRCC 1 cut(s) 353
AciI CCGC 2 cut(s) 180, 314
AclI AACGTT 1 cut(s) 473
AclWI GGATC 2 cut(s) 90, 444
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 921
AfaI GTAC 4 cut(s) 5, 748, 831, 970
AgsI TTSAA 9 cut(s) 100, 272, 289, 298, 333, 371, 497, 824, 897
AluBI AGCT 7 cut(s) 16, 25, 251, 407, 547, 657, 803
AluI AGCT 7 cut(s) 16, 25, 251, 407, 547, 657, 803
Alw21I GWGCWC 1 cut(s) 640
AlwI GGATC 2 cut(s) 90, 444
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 2 cut(s) 102, 302
ApeKI GCWGC 5 cut(s) 16, 143, 317, 554, 1057
ApoI RAATTY 1 cut(s) 506
ArsI GACNNNNNNTTYG 2 cut(s) 792, 824
Asp700I GAANNNNTTC 1 cut(s) 865
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 77, 302
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 3 cut(s) 196, 455, 988
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 358
BaeI ACNNNNGTAYC 2 cut(s) 960, 993
BanI GGYRCC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 640
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 5 cut(s) 3, 130, 304, 541, 1044
BccI CCATC 2 cut(s) 68, 630
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 599
BfaI CTAG 1 cut(s) 833
BfmI CTRYAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 474
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 7 cut(s) 17, 144, 180, 315, 318, 555, 1058
BlsI GCNGC 7 cut(s) 18, 145, 181, 316, 319, 556, 1059
BmcAI AGTACT 1 cut(s) 831
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 77, 302
BmiI GGNNCC 2 cut(s) 303, 355
BmrFI CCNGG 1 cut(s) 599
BmsI GCATC 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 708
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 2 cut(s) 626, 685
BpuMI CCSGG 1 cut(s) 599
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 3 cut(s) 79, 452, 857
Bse1I ACTGG 1 cut(s) 363
Bse3DI GCAATG 2 cut(s) 379, 570
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 379, 570
BseMII CTCAG 5 cut(s) 422, 539, 597, 617, 795
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 2 cut(s) 469, 994
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 5 cut(s) 3, 130, 304, 541, 1044
BshFI GGCC 2 cut(s) 104, 304
BshNI GGYRCC 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 4 cut(s) 80, 453, 598, 858
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 2 cut(s) 104, 304
Bsp1286I GDGCHC 2 cut(s) 358, 640
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 82, 253, 449
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 2 cut(s) 180, 314
BspANI GGCC 2 cut(s) 104, 304
BspCNI CTCAG 5 cut(s) 421, 540, 598, 618, 796
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 303, 355
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 474
BspPI GGATC 2 cut(s) 90, 444
BspT107I GGYRCC 1 cut(s) 353
BsrDI GCAATG 2 cut(s) 379, 570
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 3 cut(s) 82, 253, 449
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 5 cut(s) 244, 353, 487, 676, 1054
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 5 cut(s) 141, 148, 189, 312, 921
BstDEI CTNAG 5 cut(s) 408, 548, 606, 626, 804
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 85, 256, 452
BstMBI GATC 3 cut(s) 82, 253, 449
BstMWI GCNNNNNNNGC 6 cut(s) 22, 101, 188, 323, 563, 572
BstNSI RCATGY 2 cut(s) 314, 430
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 5 cut(s) 3, 130, 304, 541, 1044
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 2 cut(s) 104, 304
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 370, 483
BveI ACCTGC 1 cut(s) 474
Cac8I GCNNGC 5 cut(s) 141, 148, 189, 312, 921
CaiI CAGNNNCTG 1 cut(s) 25
CciI TCATGA 1 cut(s) 256
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 77, 302
Csp6I GTAC 4 cut(s) 4, 747, 830, 969
CviAII CATG 8 cut(s) 32, 67, 184, 257, 311, 427, 701, 873
CviQI GTAC 4 cut(s) 4, 747, 830, 969
DdeI CTNAG 5 cut(s) 408, 548, 606, 626, 804
DpnI GATC 3 cut(s) 84, 255, 451
DpnII GATC 3 cut(s) 82, 253, 449
DraI TTTAAA 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 104
Eco32I GATATC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 921
EcoRI GAATTC 1 cut(s) 506
EcoRV GATATC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 8 cut(s) 35, 70, 187, 260, 314, 430, 704, 876
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 8 cut(s) 31, 66, 183, 256, 310, 426, 700, 872
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 7 cut(s) 17, 144, 180, 315, 318, 555, 1058
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 7 cut(s) 17, 144, 180, 315, 318, 555, 1058
FspBI CTAG 1 cut(s) 833
GlaI GCGC 1 cut(s) 168
GluI GCNGC 7 cut(s) 17, 144, 180, 315, 318, 555, 1058
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 2 cut(s) 104, 304
HapII CCGG 4 cut(s) 80, 453, 598, 858
HhaI GCGC 1 cut(s) 169
Hin1II CATG 8 cut(s) 35, 70, 187, 260, 314, 430, 704, 876
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 6 cut(s) 134, 371, 388, 680, 691, 815
HpaII CCGG 4 cut(s) 80, 453, 598, 858
HphI GGTGA 3 cut(s) 196, 455, 988
Hpy166II GTNNAC 1 cut(s) 1012
Hpy188I TCNGA 4 cut(s) 411, 627, 661, 880
Hpy188III TCNNGA 6 cut(s) 257, 643, 688, 725, 797, 1025
Hpy8I GTNNAC 1 cut(s) 1012
HpyCH4III ACNGT 5 cut(s) 244, 353, 487, 676, 1054
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 6 cut(s) 19, 150, 384, 458, 996, 1034
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 101, 188, 323, 563, 572
HpyF3I CTNAG 5 cut(s) 408, 548, 606, 626, 804
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 8 cut(s) 35, 70, 187, 260, 314, 430, 704, 876
HspAI GCGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 82, 253, 449
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 5 cut(s) 3, 130, 304, 541, 1044
LweI GCATC 1 cut(s) 467
MaeI CTAG 1 cut(s) 833
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 4 cut(s) 244, 342, 949, 983
MalI GATC 3 cut(s) 84, 255, 451
MboI GATC 3 cut(s) 82, 253, 449
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 2 cut(s) 358, 640
MluCI AATT 5 cut(s) 506, 710, 881, 1019, 1117
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 1074
MnlI CCTC 9 cut(s) 115, 206, 217, 490, 496, 733, 799, 925, 972
MroXI GAANNNNTTC 1 cut(s) 865
MseI TTAA 2 cut(s) 578, 1120
MslI CAYNNNNRTG 2 cut(s) 65, 1052
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 4 cut(s) 80, 453, 598, 858
MspR9I CCNGG 1 cut(s) 599
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 1034
MwoI GCNNNNNNNGC 6 cut(s) 22, 101, 188, 323, 563, 572
NciI CCSGG 1 cut(s) 599
NcoI CCATGG 1 cut(s) 31
NdeII GATC 3 cut(s) 82, 253, 449
NlaIII CATG 8 cut(s) 35, 70, 187, 260, 314, 430, 704, 876
NlaIV GGNNCC 2 cut(s) 303, 355
NmuCI GTSAC 2 cut(s) 342, 949
NspI RCATGY 2 cut(s) 314, 430
PaeI GCATGC 1 cut(s) 314
PagI TCATGA 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 474
PceI AGGCCT 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PctI GAATGC 1 cut(s) 1034
PdmI GAANNNNTTC 1 cut(s) 865
PfeI GAWTC 5 cut(s) 371, 388, 680, 691, 815
PkrI GCNGC 7 cut(s) 18, 145, 181, 316, 319, 556, 1059
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Psp1406I AACGTT 1 cut(s) 473
PspN4I GGNNCC 2 cut(s) 303, 355
PspPI GGNCC 2 cut(s) 77, 302
PstI CTGCAG 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 4 cut(s) 5, 748, 831, 970
RsaNI GTAC 4 cut(s) 4, 747, 830, 969
RseI CAYNNNNRTG 2 cut(s) 65, 1052
SaqAI TTAA 2 cut(s) 578, 1120
SatI GCNGC 7 cut(s) 17, 144, 180, 315, 318, 555, 1058
Sau3AI GATC 3 cut(s) 82, 253, 449
Sau96I GGNCC 2 cut(s) 77, 302
ScaI AGTACT 1 cut(s) 831
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 2 cut(s) 358, 640
SfaNI GCATC 1 cut(s) 467
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 65, 1052
SmlI CTYRAG 2 cut(s) 641, 664
SmoI CTYRAG 2 cut(s) 641, 664
SphI GCATGC 1 cut(s) 314
Sse9I AATT 5 cut(s) 506, 710, 881, 1019, 1117
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 2 cut(s) 180, 314
SspMI CTAG 1 cut(s) 833
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 597
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 5 cut(s) 244, 353, 487, 676, 1054
TaiI ACGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 798
TasI AATT 5 cut(s) 506, 710, 881, 1019, 1117
TatI WGTACW 3 cut(s) 3, 746, 829
TauI GCSGC 2 cut(s) 182, 317
TfiI GAWTC 5 cut(s) 371, 388, 680, 691, 815
Tru1I TTAA 2 cut(s) 578, 1120
Tru9I TTAA 2 cut(s) 578, 1120
TscAI CASTG 2 cut(s) 370, 490
TseFI GTSAC 2 cut(s) 342, 949
TseI GCWGC 5 cut(s) 16, 143, 317, 554, 1057
Tsp45I GTSAC 2 cut(s) 342, 949
TspDTI ATGAA 7 cut(s) 83, 708, 717, 773, 807, 861, 1122
TspRI CASTG 2 cut(s) 370, 490
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 314, 430
XmnI GAANNNNTTC 1 cut(s) 865
XspI CTAG 1 cut(s) 833
ZrmI AGTACT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.