Rh5CG361800

Double-stranded RNA binding motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016795
Physical Location & Seq
Reverse (-)
43329421 .. 43331918
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG361800.1

Sequence Viewer

Length: 882 bp
ATGGACCCTCTATTAGTTCTTGAAGTTGGGTTTAAGGCTAGTACGGTTACAGTGGATGAGCATAGCACATCGGAGAGCCCAGAGTTCAACACTCGTACTTTAAAGAAGGCAGAGAATGCTGCTTCTATGTCTATTTCATTCTCAGACGGGTTTCAGGATGACGAACCTGGTCGTCTTTACAAGAATCTCTTACAGGAGTTGGCTCAGAGAGAAGGTTTTTCCATGCCAGCATATACAACTGTGAACTCGGGTGCATCTCACATGCCAACATTCTCTTCCACTGTGGATGTAGAAGGAGAGAAATTCTCCGGACACGTGGGGAAATCCAAAAAACAGGCAGAGTTGAGTGCTGCGAAGGTTGCTTACACCACCTTAAAAGAGCGTGCTCTCAAAACCACTCAAAGCACTAACTGCAGAATGAATGTTGTTCCTGAACAAGATTTGGTTTCTTCTCCTACTACCAAGAATAAGGAATGTGCTTTAGAAACTAAAGAGATCGATGAAGTTAAAGGGTCAGACAATGTATCAGACAACATCAATCTCAAAGCTGTGTACTGTAATGCACCTGATGCAATGGTACTGGAAATCGATAATATGAATAAAACTGGAAAGCCTTCCTCATGCTTGGAACCAGTGCTCTCTTCAACTAAAGAATACCCTTCCTCTCCAGCATTTATGCATACTGATCTTTCGGCAATCTCAATTGCGGATAAAAATGAAGGGAAATTAACGGGATTGAAAAGTTACTTGCTGTGCAACAGGTTTAGAGTCTACACACATTTTCCAGATATTGCATTCCCCAAGTGCATAACTGTGCTGCCCATCAGTGATGACAAATGGGTGGCTGTCAGGTTGGAGTTCCCAAATGAAGAAAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

293

Amino Acids

32.21

Weight (kDa)

5.2

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 60 - 123 5.7e-15 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016795)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27052
malus_domestica MD11G1178800.v1.1
prunus_persica Prupe.6G151600_v2.0.a1 Prupe.6G151600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0049631
rosa_laevigata RLG00000034628
rosa_multiflora Rmu_sc0013777.1_g000008
rosa_roxburghii Rroxscaffold_1G00032040
rosa_rugosa Rorug05G0249300
rosa_samantha Rh5AG325800 Rh5BG337100 Rh5CG361800 Rh5DG349300
rosa_wichuraiana Rw5G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 771
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 1 cut(s) 707
AcsI RAATTY 1 cut(s) 302
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 4 cut(s) 43, 97, 554, 579
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 4 cut(s) 23, 88, 645, 739
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AluBI AGCT 1 cut(s) 548
AluI AGCT 1 cut(s) 548
Alw21I GWGCWC 2 cut(s) 388, 639
Ama87I CYCGRG 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 119, 350, 817
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 613
AspS9I GGNCC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 80
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbrPI CACGTG 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 388, 639
BbvI GCAGC 3 cut(s) 106, 337, 804
BccI CCATC 1 cut(s) 830
BciT130I CCWGG 1 cut(s) 168
BfaI CTAG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 412
BisI GCNGC 3 cut(s) 120, 351, 818
BlsI GCNGC 3 cut(s) 121, 352, 819
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 630
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 263, 559
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 1 cut(s) 651
Bsa29I ATCGAT 2 cut(s) 498, 588
BsaAI YACGTR 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 308
Bse1I ACTGG 3 cut(s) 585, 610, 632
Bse3DI GCAATG 1 cut(s) 579
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 2 cut(s) 498, 588
BseGI GGATG 3 cut(s) 61, 163, 292
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 2 cut(s) 156, 218
BseNI ACTGG 3 cut(s) 585, 610, 632
BseXI GCAGC 3 cut(s) 106, 337, 804
BshVI ATCGAT 2 cut(s) 498, 588
BsiHKAI GWGCWC 2 cut(s) 388, 639
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 1 cut(s) 309
BsmI GAATGC 2 cut(s) 121, 794
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 3 cut(s) 80, 388, 639
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 2 cut(s) 495, 685
BspACI CCGC 1 cut(s) 707
BspCNI CTCAG 2 cut(s) 155, 217
BspDI ATCGAT 2 cut(s) 498, 588
BspEI TCCGGA 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 6, 630
BspMAI CTGCAG 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 3 cut(s) 585, 610, 632
BssMI GATC 2 cut(s) 495, 685
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 6 cut(s) 46, 52, 241, 283, 557, 814
Bst6I CTCTTC 2 cut(s) 280, 646
BstAPI GCANNNNNTGC 3 cut(s) 116, 411, 569
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 228, 384
BstDEI CTNAG 2 cut(s) 142, 204
BstF5I GGATG 3 cut(s) 61, 163, 292
BstKTI GATC 2 cut(s) 498, 688
BstMBI GATC 2 cut(s) 495, 685
BstMWI GCNNNNNNNGC 4 cut(s) 116, 359, 411, 569
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 412
BstV1I GCAGC 3 cut(s) 106, 337, 804
Bsu15I ATCGAT 2 cut(s) 498, 588
BsuTUI ATCGAT 2 cut(s) 498, 588
BtsCI GGATG 3 cut(s) 61, 163, 292
BtsIMutI CAGTG 4 cut(s) 57, 279, 639, 832
Cac8I GCNNGC 2 cut(s) 228, 384
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 2 cut(s) 498, 588
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 4 cut(s) 42, 96, 553, 578
CviAII CATG 3 cut(s) 223, 262, 621
CviJI RGCY 6 cut(s) 38, 78, 203, 548, 613, 845
CviKI_1 RGCY 6 cut(s) 38, 78, 203, 548, 613, 845
CviQI GTAC 4 cut(s) 42, 96, 553, 578
DdeI CTNAG 2 cut(s) 142, 204
DpnI GATC 2 cut(s) 497, 687
DpnII GATC 2 cut(s) 495, 685
DraI TTTAAA 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 280, 646
EarI CTCTTC 2 cut(s) 280, 646
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 4
Eco72I CACGTG 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 3 cut(s) 226, 265, 624
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 3 cut(s) 222, 261, 620
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 3 cut(s) 120, 351, 818
FokI GGATG 3 cut(s) 68, 170, 299
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 120, 351, 818
FspBI CTAG 1 cut(s) 39
GluI GCNGC 3 cut(s) 120, 351, 818
GsuI CTGGAG 1 cut(s) 651
HapII CCGG 1 cut(s) 309
Hin1II CATG 3 cut(s) 226, 265, 624
HinfI GANTC 2 cut(s) 184, 768
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 3 cut(s) 244, 553, 772
Hpy188I TCNGA 5 cut(s) 73, 145, 207, 517, 529
Hpy188III TCNNGA 5 cut(s) 20, 155, 309, 431, 785
Hpy8I GTNNAC 3 cut(s) 244, 553, 772
HpyAV CCTTC 7 cut(s) 100, 206, 287, 349, 624, 669, 713
HpyCH4III ACNGT 6 cut(s) 46, 52, 241, 283, 557, 814
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 8 cut(s) 254, 414, 563, 572, 679, 756, 794, 807
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 359, 411, 569
HpyF3I CTNAG 2 cut(s) 142, 204
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 3 cut(s) 226, 265, 624
Kpn2I TCCGGA 1 cut(s) 308
Kzo9I GATC 2 cut(s) 495, 685
Lsp1109I GCAGC 3 cut(s) 106, 337, 804
LweI GCATC 2 cut(s) 263, 559
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 46, 743
MalI GATC 2 cut(s) 497, 687
MboI GATC 2 cut(s) 495, 685
MboII GAAGA 4 cut(s) 267, 441, 633, 881
MfeI CAATTG 1 cut(s) 702
MhlI GDGCHC 3 cut(s) 80, 388, 639
MluCI AATT 4 cut(s) 302, 702, 725, 877
MlyI GAGTC 1 cut(s) 777
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 3 cut(s) 18, 628, 673
Mph1103I ATGCAT 1 cut(s) 681
MroI TCCGGA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 613
MseI TTAA 5 cut(s) 33, 101, 374, 507, 728
MslI CAYNNNNRTG 1 cut(s) 812
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 2 cut(s) 121, 794
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 4 cut(s) 116, 359, 411, 569
NdeII GATC 2 cut(s) 495, 685
NlaIII CATG 3 cut(s) 226, 265, 624
NlaIV GGNNCC 2 cut(s) 6, 630
NsiI ATGCAT 1 cut(s) 681
NspI RCATGY 1 cut(s) 265
PctI GAATGC 2 cut(s) 121, 794
PdmI GAANNNNTTC 1 cut(s) 613
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 121, 352, 819
PleI GAGTC 1 cut(s) 776
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 1 cut(s) 776
Ppu21I YACGTR 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 166
PspCI CACGTG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 6, 630
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 416
RsaI GTAC 4 cut(s) 43, 97, 554, 579
RsaNI GTAC 4 cut(s) 42, 96, 553, 578
RseI CAYNNNNRTG 1 cut(s) 812
SaqAI TTAA 5 cut(s) 33, 101, 374, 507, 728
SatI GCNGC 3 cut(s) 120, 351, 818
Sau3AI GATC 2 cut(s) 495, 685
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 777
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 3 cut(s) 80, 388, 639
SetI ASST 9 cut(s) 169, 217, 318, 360, 374, 550, 568, 764, 854
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 2 cut(s) 263, 559
SfcI CTRYAG 1 cut(s) 412
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 812
Sse9I AATT 4 cut(s) 302, 702, 725, 877
SsiI CCGC 1 cut(s) 707
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 6 cut(s) 46, 52, 241, 283, 557, 814
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 498, 588
TasI AATT 4 cut(s) 302, 702, 725, 877
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 5 cut(s) 33, 101, 374, 507, 728
Tru9I TTAA 5 cut(s) 33, 101, 374, 507, 728
TscAI CASTG 4 cut(s) 57, 286, 639, 832
TseI GCWGC 3 cut(s) 119, 350, 817
TspDTI ATGAA 6 cut(s) 126, 434, 516, 611, 732, 882
TspRI CASTG 4 cut(s) 57, 286, 639, 832
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 613
XspI CTAG 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.