Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016231

Physical Location & Seq

Genomic Coordinates Forward (+)

25589517 .. 25590243

Gene Structure 727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCATGGTTTTTGGAAAGATAAGAGTGGAAACCCCAAAATACAAAGTGCTTCAATCAACAATCGACTATGAAATCCGGCAATATCCACCTTCAGTGATAGCCCAATTAACCTACCATCCATCGCAGATGAAGGGCGACAAAGACGGCGGCTTTTCTGTGCTGGCCAATTACATAGGCGCCTTTGGAAACCCACAGAACACTAAGCCTGAAAAAATCGCCATGACAGCTCCAGTCATAACCAAAAGCTCGGGTGAAAAAATTGCCATGACGGCTCCAGTTGTGACAAAGACTGGTGGTGCTGAAGATGAGAAGAAGATGGTGACAATGGAGTTTCTGTTGCCTTCTAAGTATGAGAAGGCAGAGGAGGCTCCTAGGCCTGTGGATGAGAGGGTGGTGATTAGGGAAGAGGGTGAGAGGAAATATGGGGTGGTGACTTTTCGGGGTGTGGCTACAGATGAGGTGGTGGAAGAGAAGGTGGAGAAGCTGAAGCAGAGCTTAGAGAGAGATGGGTATAAGATTATAGGGGAGTTTTTGCTGGCTAGATATAACCCTCCTTGGACTTTGCCTCCATTCAGGACCAATGAGGTTATGATCCCAATAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

203

Amino Acids

22.73

Weight (kDa)

6.67

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37970
fragaria_vesca	FvH4_6g12281
malus_domestica	MD04G1144100.v1.1 MD12G1158200.v1.1
prunus_persica	Prupe.6G268400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464101
rosa_laevigata	RLG00000024723
rosa_multiflora	Rmu_sc0006492.1_g000021 Rmu_sc0010401.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416000
rosa_rugosa	Rorug03G0070700
rosa_samantha	Rh3BG131900 Rh3CG134100 Rh3DG133100
rosa_wichuraiana	Rw3G010790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	165
AcuI	CTGAAG	3 cut(s)	78, 324, 509
AcyI	GRCGYC	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	4 cut(s)	230, 249, 487, 498
AluI	AGCT	4 cut(s)	230, 249, 487, 498
AlwI	GGATC	1 cut(s)	589
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	2 cut(s)	165, 377
AspA2I	CCTAGG	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	579
AsuHPI	GGTGA	5 cut(s)	266, 334, 409, 425, 445
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	579
AvrII	CCTAGG	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	179
BccI	CCATC	4 cut(s)	126, 130, 313, 503
BceAI	ACGGC	2 cut(s)	163, 288
BfaI	CTAG	2 cut(s)	375, 543
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	151
BlnI	CCTAGG	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	579
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	579
BmiI	GGNNCC	3 cut(s)	181, 276, 372
BpmI	CTGGAG	2 cut(s)	216, 261
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	374, 557
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 553, 583
Bse1I	ACTGG	3 cut(s)	233, 278, 298
BseDI	CCNNGG	2 cut(s)	374, 557
BseGI	GGATG	2 cut(s)	118, 391
BseNI	ACTGG	3 cut(s)	233, 278, 298
BseRI	GAGGAG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	167, 379
BshNI	GGYRCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	79
BsnI	GGCC	2 cut(s)	167, 379
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	594
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	167, 379
BspLI	GGNNCC	3 cut(s)	181, 276, 372
BspPI	GGATC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	3 cut(s)	233, 278, 298
BssECI	CCNNGG	2 cut(s)	374, 557
BssMI	GATC	1 cut(s)	594
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	374, 557
Bst6I	CTCTTC	2 cut(s)	402, 465
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	165, 540
BstDEI	CTNAG	3 cut(s)	204, 348, 499
BstF5I	GGATG	2 cut(s)	118, 391
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	597
BstMBI	GATC	1 cut(s)	594
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 272, 368
BstSFI	CTRYAG	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	167, 379
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	118, 391
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	165, 540
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	579
CviAII	CATG	3 cut(s)	7, 223, 268
DdeI	CTNAG	3 cut(s)	204, 348, 499
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	1 cut(s)	596
DpnII	GATC	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	402, 465
EarI	CTCTTC	2 cut(s)	402, 465
Eco130I	CCWWGG	2 cut(s)	374, 557
Eco147I	AGGCCT	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	579
Eco57I	CTGAAG	3 cut(s)	78, 324, 509
Eco88I	CYCGRG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	374, 557
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	2 cut(s)	374, 557
FaeI	CATG	3 cut(s)	10, 226, 271
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FatI	CATG	3 cut(s)	6, 222, 267
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	2 cut(s)	105, 398
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	375, 543
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	151
GsuI	CTGGAG	2 cut(s)	216, 261
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	167, 379
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	10, 226, 271
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	5 cut(s)	266, 334, 409, 425, 445
Hpy188III	TCNNGA	1 cut(s)	577
HpyAV	CCTTC	5 cut(s)	102, 127, 352, 354, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 272, 368
HpyF3I	CTNAG	3 cut(s)	204, 348, 499
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	10, 226, 271
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	594
LmnI	GCTCC	3 cut(s)	235, 280, 376
LpnPI	CCDG	9 cut(s)	92, 149, 222, 246, 279, 291, 393, 524, 562
MaeI	CTAG	2 cut(s)	375, 543
MaeIII	GTNAC	3 cut(s)	283, 322, 433
MalI	GATC	1 cut(s)	596
MboI	GATC	1 cut(s)	594
MboII	GAAGA	5 cut(s)	317, 325, 328, 419, 482
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	3 cut(s)	107, 169, 261
MluNI	TGGCCA	1 cut(s)	167
Mly113I	GGCGCC	1 cut(s)	180
MnlI	CCTC	9 cut(s)	358, 361, 384, 403, 411, 454, 564, 579, 580
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	167
MspI	CCGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	227, 272, 368
NarI	GGCGCC	1 cut(s)	180
NdeII	GATC	1 cut(s)	594
NlaIII	CATG	3 cut(s)	10, 226, 271
NlaIV	GGNNCC	3 cut(s)	181, 276, 372
NmuCI	GTSAC	3 cut(s)	283, 322, 433
PceI	AGGCCT	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	152
PluTI	GGCGCC	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	181, 276, 372
PspPI	GGNCC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	594
Sau96I	GGNCC	1 cut(s)	579
SetI	ASST	9 cut(s)	94, 116, 232, 251, 465, 480, 489, 500, 591
SfcI	CTRYAG	1 cut(s)	453
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	1 cut(s)	579
Sse9I	AATT	3 cut(s)	107, 169, 261
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	150
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	375, 543
StuI	AGGCCT	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	374, 557
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	107, 169, 261
TauI	GCSGC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	3 cut(s)	283, 322, 433
Tsp45I	GTSAC	3 cut(s)	283, 322, 433
TspDTI	ATGAA	2 cut(s)	87, 146
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	579
XmaJI	CCTAGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	375, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.