Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016231

Physical Location & Seq

Genomic Coordinates Forward (+)

38105137 .. 38107485

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGAATGGTATTTGGAAAAATTGCTGTAGAAACCCCAAAATACCAAGTCCTTAAATCCACGGCCGATTACGAAATCCGGCAATATGCACCATCAGTGGCAGCTCAAGTGACCTATGATCCATCAGTGTTCAATGGCAACAAAGATGGTGGGTTTACTGTGCTGGCCAATTACATAGGCGCTCTTGGCAATCCCCAGAACACCAAGCCTGAGAAGATAGCCATGACTGCTCCAGTCATAACCCAGCAAAGCTCGGCTGAAAAGATCGCCATGACAGCTCCAGTTGTGACGAAAGAAGCTGGGGACGCGAAGACGGTGACAATGCAATTCCTGCTGCCTGCTAAGTATCAGAAGGCGGAGGAGGCGCCGAAGCCGGTGGATGAGAGAGTGGTGATTAAGGAAGTGGGGGAGAGGAAGTATGGGGTGGTGACTTTTAGCGGAGTGGCATCAGAGCAAGTGGTGGAGGATCGGGTGGAGAAGCTTAAGAGGGCTTTGGAGAAAGATGGGTTTAAGATTATAGGGGAGTATTTGCTGGCGAGGTTTAACCCACCTTGGACTCTGCCTGCATTTAGGACTAATGAGGTTATGATCCCAGTTGAAGCTTCCGGCGAAGACAATGGGAGCATTGAAGAACCCAAGAAGCCCGGTCGCCGCGGCCGGAAAAAGGCCGTAACTTCCGCTTCATCTTCACCGCCGAAGAAAACCCAGCACTCCAAAAAAGCCCAGGTCGAAAATGGCCCAGTAGAACTAGAACCCGAATCCTCAGATTCGGAGCTCGAAGATTACGACGACGGCATCGATTTCCTTACGAAGACCCTCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

274

Amino Acids

29.95

Weight (kDa)

5.77

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	10 - 84	2.3e-17	SOUL heme-binding protein
SOUL	PF04832	84 - 198	4e-30	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37970
fragaria_vesca	FvH4_6g12281
malus_domestica	MD04G1144100.v1.1 MD12G1158200.v1.1
prunus_persica	Prupe.6G268400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464101
rosa_laevigata	RLG00000024723
rosa_multiflora	Rmu_sc0006492.1_g000021 Rmu_sc0010401.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416000
rosa_rugosa	Rorug03G0070700
rosa_samantha	Rh3BG131900 Rh3CG134100 Rh3DG133100
rosa_wichuraiana	Rw3G010790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AccII	CGCG	2 cut(s)	308, 654
AciI	CCGC	6 cut(s)	356, 438, 652, 654, 678, 692
AclWI	GGATC	3 cut(s)	113, 474, 583
AcoI	YGGCCR	3 cut(s)	63, 165, 655
AcyI	GRCGYC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	664
AflII	CTTAAG	1 cut(s)	482
AgsI	TTSAA	3 cut(s)	133, 599, 629
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	7 cut(s)	104, 252, 278, 299, 481, 602, 775
AluI	AGCT	7 cut(s)	104, 252, 278, 299, 481, 602, 775
Alw21I	GWGCWC	1 cut(s)	777
AlwI	GGATC	3 cut(s)	113, 474, 583
AoxI	GGCC	5 cut(s)	63, 165, 655, 666, 736
ApeKI	GCWGC	2 cut(s)	101, 334
AspLEI	GCGC	2 cut(s)	182, 367
AspS9I	GGNCC	1 cut(s)	737
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	4 cut(s)	328, 403, 439, 681
BalI	TGGCCA	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	777
BbsI	GAAGAC	3 cut(s)	317, 618, 818
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	2 cut(s)	113, 321
BccI	CCATC	4 cut(s)	100, 130, 140, 497
BceAI	ACGGC	3 cut(s)	78, 653, 808
BciT130I	CCWGG	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	645
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	2 cut(s)	183, 368
BfrI	CTTAAG	1 cut(s)	482
BisI	GCNGC	4 cut(s)	102, 335, 652, 655
BlsI	GCNGC	4 cut(s)	103, 336, 653, 656
Bme1390I	CCNGG	2 cut(s)	645, 725
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	2 cut(s)	645, 725
BmrI	ACTGGG	2 cut(s)	587, 734
BmsI	GCATC	2 cut(s)	455, 804
BmuI	ACTGGG	2 cut(s)	587, 734
BpiI	GAAGAC	3 cut(s)	317, 618, 818
BpmI	CTGGAG	2 cut(s)	216, 264
BpuEI	CTTGAG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	60, 551, 652, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	4 cut(s)	233, 281, 593, 740
BseBI	CCWGG	1 cut(s)	725
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	4 cut(s)	60, 551, 652, 723
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	201, 777
BseNI	ACTGG	4 cut(s)	233, 281, 593, 740
BseRI	GAGGAG	1 cut(s)	374
BseX3I	CGGCCG	2 cut(s)	63, 655
BseXI	GCAGC	2 cut(s)	113, 321
BseYI	CCCAGC	3 cut(s)	243, 299, 705
Bsh1236I	CGCG	2 cut(s)	308, 654
Bsh1285I	CGRYCG	3 cut(s)	66, 649, 658
BshFI	GGCC	5 cut(s)	65, 167, 657, 668, 738
BshNI	GGYRCC	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	798
BsiEI	CGRYCG	3 cut(s)	66, 649, 658
BsiHKAI	GWGCWC	1 cut(s)	777
BsiSI	CCGG	5 cut(s)	79, 374, 606, 645, 658
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	5 cut(s)	65, 167, 657, 668, 738
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	4 cut(s)	118, 264, 466, 588
BspACI	CCGC	6 cut(s)	356, 438, 652, 654, 678, 692
BspANI	GGCC	5 cut(s)	65, 167, 657, 668, 738
BspCNI	CTCAG	2 cut(s)	202, 776
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	2 cut(s)	308, 654
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	3 cut(s)	113, 474, 583
BspT107I	GGYRCC	1 cut(s)	364
BspTI	CTTAAG	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	4 cut(s)	233, 281, 593, 740
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	4 cut(s)	60, 551, 652, 723
BssMI	GATC	4 cut(s)	118, 264, 466, 588
BssNI	GRCGYC	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	2 cut(s)	160, 316
BstACI	GRCGYC	1 cut(s)	365
BstAFI	CTTAAG	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	4 cut(s)	165, 339, 534, 564
BstDEI	CTNAG	4 cut(s)	210, 342, 763, 822
BstDSI	CCRYGG	2 cut(s)	60, 652
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	308, 654
BstH2I	RGCGCY	2 cut(s)	183, 368
BstHHI	GCGC	2 cut(s)	182, 367
BstKTI	GATC	4 cut(s)	121, 267, 469, 591
BstMBI	GATC	4 cut(s)	118, 264, 466, 588
BstMCI	CGRYCG	3 cut(s)	66, 649, 658
BstMWI	GCNNNNNNNGC	6 cut(s)	186, 227, 275, 305, 331, 362
BstNI	CCWGG	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	643, 723
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	2 cut(s)	308, 654
BstV1I	GCAGC	2 cut(s)	113, 321
BstV2I	GAAGAC	3 cut(s)	317, 618, 818
BstZI	CGGCCG	2 cut(s)	63, 655
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	5 cut(s)	65, 167, 657, 668, 738
BsuTUI	ATCGAT	1 cut(s)	798
BtgI	CCRYGG	2 cut(s)	60, 652
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	102, 132
Cac8I	GCNNGC	4 cut(s)	165, 339, 534, 564
CfoI	GCGC	2 cut(s)	182, 367
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	737
Cfr42I	CCGCGG	1 cut(s)	655
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	2 cut(s)	223, 271
DdeI	CTNAG	4 cut(s)	210, 342, 763, 822
DinI	GGCGCC	1 cut(s)	366
DpnI	GATC	4 cut(s)	120, 266, 468, 590
DpnII	GATC	4 cut(s)	118, 264, 466, 588
EaeI	YGGCCR	3 cut(s)	63, 165, 655
EagI	CGGCCG	2 cut(s)	63, 655
EciI	GGCGGA	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	775
EclXI	CGGCCG	2 cut(s)	63, 655
Eco130I	CCWWGG	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	777
Eco52I	CGGCCG	2 cut(s)	63, 655
Eco53kI	GAGCTC	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	551
EcoT38I	GRGCYC	1 cut(s)	777
EgeI	GGCGCC	1 cut(s)	366
EheI	GGCGCC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	2 cut(s)	226, 274
FaiI	YATR	9 cut(s)	87, 117, 176, 224, 239, 272, 420, 518, 587
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	222, 270
Fnu4HI	GCNGC	4 cut(s)	102, 335, 652, 655
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	4 cut(s)	102, 335, 652, 655
FspBI	CTAG	1 cut(s)	749
GlaI	GCGC	2 cut(s)	181, 366
GluI	GCNGC	4 cut(s)	102, 335, 652, 655
GsaI	CCCAGC	3 cut(s)	247, 303, 709
GsuI	CTGGAG	2 cut(s)	216, 264
HaeII	RGCGCY	2 cut(s)	183, 368
HaeIII	GGCC	5 cut(s)	65, 167, 657, 668, 738
HapII	CCGG	5 cut(s)	79, 374, 606, 645, 658
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	2 cut(s)	182, 367
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	2 cut(s)	226, 274
Hin6I	GCGC	2 cut(s)	180, 365
HinP1I	GCGC	2 cut(s)	180, 365
HindIII	AAGCTT	2 cut(s)	479, 600
HinfI	GANTC	3 cut(s)	556, 758, 767
HpaII	CCGG	5 cut(s)	79, 374, 606, 645, 658
HphI	GGTGA	4 cut(s)	328, 403, 439, 681
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	4 cut(s)	351, 451, 766, 772
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	2 cut(s)	791, 794
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	160, 316
HpyCH4V	TGCA	3 cut(s)	89, 325, 566
HpyF10VI	GCNNNNNNNGC	6 cut(s)	186, 227, 275, 305, 331, 362
HpyF3I	CTNAG	4 cut(s)	210, 342, 763, 822
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	226, 274
HspAI	GCGC	2 cut(s)	180, 365
KasI	GGCGCC	1 cut(s)	364
KspI	CCGCGG	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	118, 264, 466, 588
LmnI	GCTCC	4 cut(s)	235, 283, 621, 772
Lsp1109I	GCAGC	2 cut(s)	113, 321
LweI	GCATC	2 cut(s)	455, 804
MaeI	CTAG	1 cut(s)	749
MaeIII	GTNAC	5 cut(s)	109, 286, 316, 427, 670
MalI	GATC	4 cut(s)	120, 266, 468, 590
MboI	GATC	4 cut(s)	118, 264, 466, 588
MboII	GAAGA	8 cut(s)	226, 322, 623, 641, 678, 709, 791, 823
MhlI	GDGCHC	1 cut(s)	777
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	3 cut(s)	21, 169, 326
MluNI	TGGCCA	1 cut(s)	167
Mly113I	GGCGCC	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	550
MnlI	CCTC	8 cut(s)	352, 355, 405, 457, 480, 531, 574, 772
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	5 cut(s)	54, 396, 483, 510, 543
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	654
MspCI	CTTAAG	1 cut(s)	482
MspI	CCGG	5 cut(s)	79, 374, 606, 645, 658
MspR9I	CCNGG	2 cut(s)	645, 725
MvaI	CCWGG	1 cut(s)	725
MvnI	CGCG	2 cut(s)	308, 654
MwoI	GCNNNNNNNGC	6 cut(s)	186, 227, 275, 305, 331, 362
NarI	GGCGCC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	645
NdeII	GATC	4 cut(s)	118, 264, 466, 588
NlaIII	CATG	2 cut(s)	226, 274
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	4 cut(s)	109, 286, 316, 427
PcsI	WCGNNNNNNNCGW	2 cut(s)	783, 795
PfeI	GAWTC	2 cut(s)	758, 767
PkrI	GCNGC	4 cut(s)	103, 336, 653, 656
PleI	GAGTC	1 cut(s)	550
PluTI	GGCGCC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	723
PspFI	CCCAGC	3 cut(s)	243, 299, 705
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	737
SacI	GAGCTC	1 cut(s)	777
SacII	CCGCGG	1 cut(s)	655
SaqAI	TTAA	5 cut(s)	54, 396, 483, 510, 543
SatI	GCNGC	4 cut(s)	102, 335, 652, 655
Sau3AI	GATC	4 cut(s)	118, 264, 466, 588
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	2 cut(s)	645, 725
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	2 cut(s)	455, 804
SfcI	CTRYAG	1 cut(s)	27
SfoI	GGCGCC	1 cut(s)	366
Sfr303I	CCGCGG	1 cut(s)	655
SgrBI	CCGCGG	1 cut(s)	655
SmlI	CTYRAG	2 cut(s)	105, 482
SmoI	CTYRAG	2 cut(s)	105, 482
Sse9I	AATT	3 cut(s)	21, 169, 326
SsiI	CCGC	6 cut(s)	356, 438, 652, 654, 678, 692
SspDI	GGCGCC	1 cut(s)	364
SspMI	CTAG	1 cut(s)	749
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	643, 723
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	2 cut(s)	160, 316
TaqI	TCGA	3 cut(s)	729, 777, 798
TasI	AATT	3 cut(s)	21, 169, 326
TauI	GCSGC	2 cut(s)	654, 657
TfiI	GAWTC	2 cut(s)	758, 767
Tru1I	TTAA	5 cut(s)	54, 396, 483, 510, 543
Tru9I	TTAA	5 cut(s)	54, 396, 483, 510, 543
TscAI	CASTG	2 cut(s)	102, 132
TseFI	GTSAC	4 cut(s)	109, 286, 316, 427
TseI	GCWGC	2 cut(s)	101, 334
Tsp45I	GTSAC	4 cut(s)	109, 286, 316, 427
TspDTI	ATGAA	1 cut(s)	672
TspRI	CASTG	2 cut(s)	102, 132
Vha464I	CTTAAG	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XspI	CTAG	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.