Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016231

Physical Location & Seq

Genomic Coordinates Reverse (-)

10395174 .. 10396034

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G010790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGCCCATCAAAATGGTGGCCAGACAGTGTCCACGAGTACATCACCAAAATCAGCCACTCGTTCAAGAGTGGACATTTCCAACCTCTTCCACAAGCAATCCCATCAAACGAAAGCCAAAAAAAGAGAAAACCTCCTCTCCAAGCAAAGGATCAGTATTCAATACAAATAGAAACCCCAAAATACCAAGTCCTTAAATCCACAGCCGATTACGAAATCCGGCAATATGCACCATCAGTGGCAGCTCAAGTCACCTATGATCCATCAGTGTTCAATGGCAACAGAGATGGTGGGTTTACTGTACTGGCCAATTACATAGGCGCTCTTGGCAATCCCCAGAACACCAAGCCTGAGAAGATAGCCATGACTGCTCCAGTCATAACCCAGCAAAGCTCGGCTGAAAAGATCGCCATGACAGCTCCAGTTGTGACGAAAGAAGCTGGGGACGCGAAGACGGTGACAATGCAATTCCTGCTGCCTGCTAAGTATCAGAAGGCGGAGGAGGCGCCGAAGCCGGTGGATGAGAGAGTGGTGATTAGGGAAGTGGGGGAGAGGAAGTATGGGGTGGTGACTTTTAGCGGAGTGGCGTCAGAGCAAGTGGTGGAGGATCGGGTGGAGAAGCTTAAGAGGGCTTTGGAGAAAGATGGGTTTAAGATTATAGGGGAGTATTTGCTGGCGAGGTTTAACCCACCTTGGACCCTGCCTGCATTTAGGACTAATGAGGTTATGATCCCAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

247

Amino Acids

27.6

Weight (kDa)

9.02

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	57 - 131	1.8e-17	SOUL heme-binding protein
SOUL	PF04832	131 - 245	2.8e-30	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37970
fragaria_vesca	FvH4_6g12281
malus_domestica	MD04G1144100.v1.1 MD12G1158200.v1.1
prunus_persica	Prupe.6G268400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464101
rosa_laevigata	RLG00000024723
rosa_multiflora	Rmu_sc0006492.1_g000021 Rmu_sc0010401.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416000
rosa_rugosa	Rorug03G0070700
rosa_samantha	Rh3BG131900 Rh3CG134100 Rh3DG133100
rosa_wichuraiana	Rw3G010790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	1 cut(s)	449
AciI	CCGC	2 cut(s)	497, 579
AclWI	GGATC	4 cut(s)	159, 254, 615, 724
AcoI	YGGCCR	2 cut(s)	20, 306
AcyI	GRCGYC	2 cut(s)	506, 587
AfaI	GTAC	2 cut(s)	41, 303
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	67, 162, 274
AluBI	AGCT	5 cut(s)	245, 393, 419, 440, 622
AluI	AGCT	5 cut(s)	245, 393, 419, 440, 622
AlwI	GGATC	4 cut(s)	159, 254, 615, 724
AoxI	GGCC	3 cut(s)	4, 20, 306
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	242, 475
AspLEI	GCGC	2 cut(s)	323, 508
AspS9I	GGNCC	3 cut(s)	4, 5, 696
AsuHPI	GGTGA	5 cut(s)	37, 244, 469, 544, 580
AvaII	GGWCC	1 cut(s)	696
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	2 cut(s)	22, 308
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	254, 462
BccI	CCATC	6 cut(s)	16, 112, 241, 271, 281, 638
BfoI	RGCGCY	2 cut(s)	324, 509
BfrI	CTTAAG	1 cut(s)	623
BisI	GCNGC	2 cut(s)	243, 476
BlsI	GCNGC	2 cut(s)	244, 477
Bme18I	GGWCC	1 cut(s)	696
BmgT120I	GGNCC	3 cut(s)	4, 5, 696
BmiI	GGNNCC	3 cut(s)	6, 507, 698
BmrI	ACTGGG	1 cut(s)	728
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BpmI	CTGGAG	2 cut(s)	357, 405
BpuEI	CTTGAG	1 cut(s)	231
BsaHI	GRCGYC	2 cut(s)	506, 587
BsaJI	CCNNGG	1 cut(s)	692
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 542, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	4 cut(s)	309, 374, 422, 734
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	4 cut(s)	309, 374, 422, 734
BseRI	GAGGAG	2 cut(s)	126, 515
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	254, 462
BseYI	CCCAGC	2 cut(s)	384, 440
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	6, 22, 308
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	220, 515
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	6, 22, 308
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	151, 259, 405, 607, 729
BspACI	CCGC	2 cut(s)	497, 579
BspANI	GGCC	3 cut(s)	6, 22, 308
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	3 cut(s)	6, 507, 698
BspPI	GGATC	4 cut(s)	159, 254, 615, 724
BspT107I	GGYRCC	1 cut(s)	505
BspTI	CTTAAG	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	4 cut(s)	309, 374, 422, 734
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	5 cut(s)	151, 259, 405, 607, 729
BssNI	GRCGYC	2 cut(s)	506, 587
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	692
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	3 cut(s)	29, 301, 457
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	2 cut(s)	506, 587
BstAFI	CTTAAG	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	480, 675, 705
BstDEI	CTNAG	2 cut(s)	351, 483
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	2 cut(s)	324, 509
BstHHI	GCGC	2 cut(s)	323, 508
BstKTI	GATC	5 cut(s)	154, 262, 408, 610, 732
BstMBI	GATC	5 cut(s)	151, 259, 405, 607, 729
BstMWI	GCNNNNNNNGC	6 cut(s)	327, 368, 416, 446, 472, 503
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	254, 462
BstV2I	GAAGAC	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	6, 22, 308
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	3 cut(s)	34, 243, 273
Cac8I	GCNNGC	3 cut(s)	480, 675, 705
CfoI	GCGC	2 cut(s)	323, 508
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	4, 5, 696
CseI	GACGC	2 cut(s)	455, 576
Csp6I	GTAC	2 cut(s)	40, 302
CviAII	CATG	2 cut(s)	364, 412
CviQI	GTAC	2 cut(s)	40, 302
DdeI	CTNAG	2 cut(s)	351, 483
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	5 cut(s)	153, 261, 407, 609, 731
DpnII	GATC	5 cut(s)	151, 259, 405, 607, 729
EaeI	YGGCCR	2 cut(s)	20, 306
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	2 cut(s)	367, 415
FaiI	YATR	9 cut(s)	228, 258, 317, 365, 380, 413, 561, 659, 728
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	2 cut(s)	363, 411
Fnu4HI	GCNGC	2 cut(s)	243, 476
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	243, 476
GlaI	GCGC	2 cut(s)	322, 507
GluI	GCNGC	2 cut(s)	243, 476
GsaI	CCCAGC	2 cut(s)	388, 444
GsuI	CTGGAG	2 cut(s)	357, 405
HaeII	RGCGCY	2 cut(s)	324, 509
HaeIII	GGCC	3 cut(s)	6, 22, 308
HapII	CCGG	2 cut(s)	220, 515
HgaI	GACGC	2 cut(s)	455, 576
HhaI	GCGC	2 cut(s)	323, 508
Hin1I	GRCGYC	2 cut(s)	506, 587
Hin1II	CATG	2 cut(s)	367, 415
Hin6I	GCGC	2 cut(s)	321, 506
HinP1I	GCGC	2 cut(s)	321, 506
HindIII	AAGCTT	1 cut(s)	620
HpaII	CCGG	2 cut(s)	220, 515
HphI	GGTGA	5 cut(s)	37, 244, 469, 544, 580
Hpy166II	GTNNAC	3 cut(s)	34, 74, 297
Hpy188I	TCNGA	2 cut(s)	492, 592
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	34, 74, 297
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	3 cut(s)	29, 301, 457
HpyCH4V	TGCA	3 cut(s)	230, 466, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	327, 368, 416, 446, 472, 503
HpyF3I	CTNAG	2 cut(s)	351, 483
Hsp92I	GRCGYC	2 cut(s)	506, 587
Hsp92II	CATG	2 cut(s)	367, 415
HspAI	GCGC	2 cut(s)	321, 506
KasI	GGCGCC	1 cut(s)	505
Kzo9I	GATC	5 cut(s)	151, 259, 405, 607, 729
LmnI	GCTCC	2 cut(s)	376, 424
Lsp1109I	GCAGC	2 cut(s)	254, 462
MaeIII	GTNAC	4 cut(s)	250, 427, 457, 568
MalI	GATC	5 cut(s)	153, 261, 407, 609, 731
MboI	GATC	5 cut(s)	151, 259, 405, 607, 729
MboII	GAAGA	3 cut(s)	80, 367, 463
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	2 cut(s)	22, 308
MluCI	AATT	2 cut(s)	310, 467
MluNI	TGGCCA	2 cut(s)	22, 308
Mly113I	GGCGCC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	106
Mox20I	TGGCCA	2 cut(s)	22, 308
MscI	TGGCCA	2 cut(s)	22, 308
MseI	TTAA	4 cut(s)	195, 624, 651, 684
MslI	CAYNNNNRTG	1 cut(s)	13
Msp20I	TGGCCA	2 cut(s)	22, 308
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	2 cut(s)	220, 515
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	6 cut(s)	327, 368, 416, 446, 472, 503
NarI	GGCGCC	1 cut(s)	506
NdeII	GATC	5 cut(s)	151, 259, 405, 607, 729
NlaIII	CATG	2 cut(s)	367, 415
NlaIV	GGNNCC	3 cut(s)	6, 507, 698
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	4 cut(s)	250, 427, 457, 568
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	244, 477
PluTI	GGCGCC	1 cut(s)	509
PspFI	CCCAGC	2 cut(s)	384, 440
PspN4I	GGNNCC	3 cut(s)	6, 507, 698
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	3 cut(s)	4, 5, 696
PsyI	GACNNNGTC	1 cut(s)	29
RsaI	GTAC	2 cut(s)	41, 303
RsaNI	GTAC	2 cut(s)	40, 302
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	4 cut(s)	195, 624, 651, 684
SatI	GCNGC	2 cut(s)	243, 476
Sau3AI	GATC	5 cut(s)	151, 259, 405, 607, 729
Sau96I	GGNCC	3 cut(s)	4, 5, 696
SduI	GDGCHC	1 cut(s)	8
SfoI	GGCGCC	1 cut(s)	507
SinI	GGWCC	1 cut(s)	696
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	2 cut(s)	246, 623
SmoI	CTYRAG	2 cut(s)	246, 623
Sse9I	AATT	2 cut(s)	310, 467
SsiI	CCGC	2 cut(s)	497, 579
SspDI	GGCGCC	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	3 cut(s)	29, 301, 457
TasI	AATT	2 cut(s)	310, 467
TatI	WGTACW	2 cut(s)	39, 301
Tru1I	TTAA	4 cut(s)	195, 624, 651, 684
Tru9I	TTAA	4 cut(s)	195, 624, 651, 684
TscAI	CASTG	3 cut(s)	34, 243, 273
TseFI	GTSAC	4 cut(s)	250, 427, 457, 568
TseI	GCWGC	2 cut(s)	242, 475
Tsp45I	GTSAC	4 cut(s)	250, 427, 457, 568
TspRI	CASTG	3 cut(s)	34, 243, 273
Tth111I	GACNNNGTC	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.