Rmu_sc0010401.1_g000002

Heme-binding-like protein At3g10130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010401.1
OG0016231
Physical Location & Seq
Reverse (-)
3589 .. 4191
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010401.1_g000002.1.cds

Sequence Viewer

Length: 603 bp
atgggaatggtatttggaaaaattgctgtagaaaccccaaaataccaagtccttaaatccacagccgattacgaaatccggcaatatgcaccatcagtggcagctcaagtcacctatgatccatcagtgttcaatggcaacagagacggtgggtttactgtgctggccaattacataggcgctcttggcaatccccagaacaccaagcctgagaagatagccatgactgctccagtcataacccagcaaagctcggctgaaaagatcgccatgacagctccagttgtgacgaaagaagctggggacgcgaagacggtgacaatgcaattcctgctgcctgctaagtatcagaaggcggaggaggcgccgaagccggtggatgagagagtggtgattagggaagtgggggagaggaagtatggggtggtgacttttagcggagtggcgtcagagcaagtggtggaggatcgggtggagaagcttaagagggctttggagaaagatgggtttaagattataggggagtatttgctggcgaggtttaacccaccttggaccctgcctgcatttaggactaatgaggttatgatcccagttgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

200

Amino Acids

22.05

Weight (kDa)

7.79

Isoelectric Point (pI)

24.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37970
fragaria_vesca FvH4_6g12281
malus_domestica MD04G1144100.v1.1 MD12G1158200.v1.1
prunus_persica Prupe.6G268400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0464101
rosa_laevigata RLG00000024723
rosa_multiflora Rmu_sc0006492.1_g000021 Rmu_sc0010401.1_g000002
rosa_roxburghii Rroxscaffold_6G00416000
rosa_rugosa Rorug03G0070700
rosa_samantha Rh3BG131900 Rh3CG134100 Rh3DG133100
rosa_wichuraiana Rw3G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AccII CGCG 1 cut(s) 308
AciI CCGC 2 cut(s) 356, 438
AclWI GGATC 3 cut(s) 113, 474, 583
AcoI YGGCCR 1 cut(s) 165
AcyI GRCGYC 2 cut(s) 365, 446
AflII CTTAAG 1 cut(s) 482
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 5 cut(s) 104, 252, 278, 299, 481
AluI AGCT 5 cut(s) 104, 252, 278, 299, 481
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 113, 474, 583
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 101, 334
AspLEI GCGC 2 cut(s) 182, 367
AspS9I GGNCC 1 cut(s) 555
AsuHPI GGTGA 4 cut(s) 103, 328, 403, 439
AvaII GGWCC 1 cut(s) 555
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 113, 321
BccI CCATC 3 cut(s) 100, 130, 497
BcoDI GTCTC 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 183, 368
BfrI CTTAAG 1 cut(s) 482
BisI GCNGC 2 cut(s) 102, 335
BlsI GCNGC 2 cut(s) 103, 336
Bme18I GGWCC 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 555
BmiI GGNNCC 2 cut(s) 366, 557
BmrI ACTGGG 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 2 cut(s) 216, 264
BpuEI CTTGAG 1 cut(s) 90
BsaHI GRCGYC 2 cut(s) 365, 446
BsaJI CCNNGG 1 cut(s) 551
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 3 cut(s) 233, 281, 593
BseDI CCNNGG 1 cut(s) 551
BseGI GGATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 3 cut(s) 233, 281, 593
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 113, 321
BseYI CCCAGC 2 cut(s) 243, 299
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 364
BsiSI CCGG 2 cut(s) 79, 374
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 118, 264, 466, 588
BspACI CCGC 2 cut(s) 356, 438
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 366, 557
BspPI GGATC 3 cut(s) 113, 474, 583
BspT107I GGYRCC 1 cut(s) 364
BspTI CTTAAG 1 cut(s) 482
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 3 cut(s) 233, 281, 593
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 551
BssMI GATC 4 cut(s) 118, 264, 466, 588
BssNI GRCGYC 2 cut(s) 365, 446
BssT1I CCWWGG 1 cut(s) 551
Bst4CI ACNGT 3 cut(s) 149, 160, 316
BstACI GRCGYC 2 cut(s) 365, 446
BstAFI CTTAAG 1 cut(s) 482
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 4 cut(s) 165, 339, 534, 564
BstDEI CTNAG 2 cut(s) 210, 342
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 2 cut(s) 183, 368
BstHHI GCGC 2 cut(s) 182, 367
BstKTI GATC 4 cut(s) 121, 267, 469, 591
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 118, 264, 466, 588
BstMWI GCNNNNNNNGC 6 cut(s) 186, 227, 275, 305, 331, 362
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 113, 321
BstV2I GAAGAC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 102, 132
Cac8I GCNNGC 4 cut(s) 165, 339, 534, 564
CfoI GCGC 2 cut(s) 182, 367
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 555
CseI GACGC 2 cut(s) 314, 435
CviAII CATG 2 cut(s) 223, 271
DdeI CTNAG 2 cut(s) 210, 342
DinI GGCGCC 1 cut(s) 366
DpnI GATC 4 cut(s) 120, 266, 468, 590
DpnII GATC 4 cut(s) 118, 264, 466, 588
EaeI YGGCCR 1 cut(s) 165
EciI GGCGGA 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 551
EgeI GGCGCC 1 cut(s) 366
EheI GGCGCC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 551
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 226, 274
FaiI YATR 9 cut(s) 87, 117, 176, 224, 239, 272, 420, 518, 587
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 222, 270
Fnu4HI GCNGC 2 cut(s) 102, 335
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 102, 335
GlaI GCGC 2 cut(s) 181, 366
GluI GCNGC 2 cut(s) 102, 335
GsaI CCCAGC 2 cut(s) 247, 303
GsuI CTGGAG 2 cut(s) 216, 264
HaeII RGCGCY 2 cut(s) 183, 368
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 79, 374
HgaI GACGC 2 cut(s) 314, 435
HhaI GCGC 2 cut(s) 182, 367
Hin1I GRCGYC 2 cut(s) 365, 446
Hin1II CATG 2 cut(s) 226, 274
Hin6I GCGC 2 cut(s) 180, 365
HinP1I GCGC 2 cut(s) 180, 365
HindIII AAGCTT 1 cut(s) 479
HpaII CCGG 2 cut(s) 79, 374
HphI GGTGA 4 cut(s) 103, 328, 403, 439
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 351, 451
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 3 cut(s) 149, 160, 316
HpyCH4V TGCA 3 cut(s) 89, 325, 566
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 227, 275, 305, 331, 362
HpyF3I CTNAG 2 cut(s) 210, 342
Hsp92I GRCGYC 2 cut(s) 365, 446
Hsp92II CATG 2 cut(s) 226, 274
HspAI GCGC 2 cut(s) 180, 365
KasI GGCGCC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 118, 264, 466, 588
LmnI GCTCC 2 cut(s) 235, 283
Lsp1109I GCAGC 2 cut(s) 113, 321
MaeIII GTNAC 4 cut(s) 109, 286, 316, 427
MalI GATC 4 cut(s) 120, 266, 468, 590
MboI GATC 4 cut(s) 118, 264, 466, 588
MboII GAAGA 2 cut(s) 226, 322
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 21, 169, 326
MluNI TGGCCA 1 cut(s) 167
Mly113I GGCGCC 1 cut(s) 365
MnlI CCTC 7 cut(s) 352, 355, 405, 457, 480, 531, 574
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 4 cut(s) 54, 483, 510, 543
Msp20I TGGCCA 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 2 cut(s) 79, 374
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 186, 227, 275, 305, 331, 362
NarI GGCGCC 1 cut(s) 365
NdeII GATC 4 cut(s) 118, 264, 466, 588
NlaIII CATG 2 cut(s) 226, 274
NlaIV GGNNCC 2 cut(s) 366, 557
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 4 cut(s) 109, 286, 316, 427
PkrI GCNGC 2 cut(s) 103, 336
PluTI GGCGCC 1 cut(s) 368
PspFI CCCAGC 2 cut(s) 243, 299
PspN4I GGNNCC 2 cut(s) 366, 557
PspPI GGNCC 1 cut(s) 555
SaqAI TTAA 4 cut(s) 54, 483, 510, 543
SatI GCNGC 2 cut(s) 102, 335
Sau3AI GATC 4 cut(s) 118, 264, 466, 588
Sau96I GGNCC 1 cut(s) 555
SetI ASST 9 cut(s) 106, 116, 254, 280, 301, 483, 542, 553, 585
SfcI CTRYAG 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 366
SinI GGWCC 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 105, 482
SmoI CTYRAG 2 cut(s) 105, 482
Sse9I AATT 3 cut(s) 21, 169, 326
SsiI CCGC 2 cut(s) 356, 438
SspDI GGCGCC 1 cut(s) 364
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 149, 160, 316
TasI AATT 3 cut(s) 21, 169, 326
Tru1I TTAA 4 cut(s) 54, 483, 510, 543
Tru9I TTAA 4 cut(s) 54, 483, 510, 543
TscAI CASTG 2 cut(s) 102, 132
TseFI GTSAC 4 cut(s) 109, 286, 316, 427
TseI GCWGC 2 cut(s) 101, 334
Tsp45I GTSAC 4 cut(s) 109, 286, 316, 427
TspRI CASTG 2 cut(s) 102, 132
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.