Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014219

Physical Location & Seq

Genomic Coordinates Reverse (-)

26444601 .. 26447840

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G284900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCCTTGCCTTTACATCTCCACCAACGTGAACCTAGATGGATTTGACACTGATTCCATCTTTTCTGAAGCCACCAAAGCGATCTCTTCCATCACTGGAAAGCCTGAAGACTATGTGATGGTGTTGCTTAAGGGATCGGTGCCCATATCATTTGGCAGGAGCACCAGTGAGCCAGCAGCATATGGTGAGCTAGTAGCAATGGGTGGAATTAACAAACCAGTGAAGAGGCAGCTGATTGCCACCCTTGGCACAATCATGGAGGCCAAGCTTTCAATCCCAAAGACCAGATTTTTTCTTAAAGTTGTTGATATAAGTACTGCAACAGGGTCTAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 map00350 map00360

Pfam Domains

Protein Families

MIF

Protein Analysis

113

Amino Acids

11.96

Weight (kDa)

8.76

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51660
fragaria_vesca	FvH4_6g10610
malus_domestica	MD04G1166700.v1.1 MD12G1179700.v1.1
prunus_persica	Prupe.6G284900_v2.0.a1
pyrus_communis	pycom04g14810 pycom12g16980
rosa_chinensis	RchiOBHm_Chr3g0461611
rosa_laevigata	RLG00000024914
rosa_multiflora	Rmu_sc0003578.1_g000004
rosa_roxburghii	Rroxscaffold_6G00418100 Rroxscaffold_6G00418470
rosa_rugosa	Rorug03G0052400
rosa_samantha	Rh3AG110500 Rh3CG115600 Rh3DG115500
rosa_wichuraiana	Rw3G009350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	142
AcuI	CTGAAG	2 cut(s)	87, 126
AfaI	GTAC	1 cut(s)	316
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	273
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	190, 232, 268, 334
AluI	AGCT	4 cut(s)	190, 232, 268, 334
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	176, 229
AsuHPI	GGTGA	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	188, 241
BccI	CCATC	4 cut(s)	32, 65, 98, 112
BfaI	CTAG	2 cut(s)	35, 191
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	177, 230
BlsI	GCNGC	2 cut(s)	178, 231
BmcAI	AGTACT	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bse1I	ACTGG	3 cut(s)	100, 165, 218
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	3 cut(s)	100, 165, 218
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	188, 241
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	144, 164
Bsp143I	GATC	2 cut(s)	81, 134
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	100, 165, 218
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	81, 134
BssT1I	CCWWGG	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	91, 218
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	84, 137
BstMBI	GATC	2 cut(s)	81, 134
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	188, 241
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	263
BtsIMutI	CAGTG	4 cut(s)	48, 93, 172, 225
Cac8I	GCNNGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	8 cut(s)	71, 103, 172, 190, 232, 263, 268, 334
CviKI_1	RGCY	8 cut(s)	71, 103, 172, 190, 232, 263, 268, 334
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	83, 136
DpnII	GATC	2 cut(s)	81, 134
Eam1104I	CTCTTC	2 cut(s)	91, 218
EarI	CTCTTC	2 cut(s)	91, 218
Eco130I	CCWWGG	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	87, 126
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	259
FaiI	YATR	6 cut(s)	114, 146, 181, 183, 257, 311
FatI	CATG	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	177, 230
Fsp4HI	GCNGC	2 cut(s)	177, 230
FspBI	CTAG	2 cut(s)	35, 191
GluI	GCNGC	2 cut(s)	177, 230
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	67, 338
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	81, 134
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	8 cut(s)	81, 117, 142, 178, 186, 231, 298, 309
Lsp1109I	GCAGC	2 cut(s)	188, 241
MaeI	CTAG	2 cut(s)	35, 191
MaeII	ACGT	1 cut(s)	27
MalI	GATC	2 cut(s)	83, 136
MboI	GATC	2 cut(s)	81, 134
MboII	GAAGA	3 cut(s)	78, 119, 235
MhlI	GDGCHC	2 cut(s)	144, 164
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	2 cut(s)	219, 253
MseI	TTAA	3 cut(s)	129, 210, 297
MslI	CAYNNNNRTG	2 cut(s)	26, 254
MspA1I	CMGCKG	1 cut(s)	232
MspCI	CTTAAG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	81, 134
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	141
OliI	CACNNNNGTG	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	178, 231
PspN4I	GGNNCC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	2 cut(s)	26, 254
SaqAI	TTAA	3 cut(s)	129, 210, 297
SatI	GCNGC	2 cut(s)	177, 230
Sau3AI	GATC	2 cut(s)	81, 134
ScaI	AGTACT	1 cut(s)	316
SduI	GDGCHC	2 cut(s)	144, 164
SetI	ASST	6 cut(s)	30, 36, 192, 234, 270, 336
SmiMI	CAYNNNNRTG	2 cut(s)	26, 254
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	2 cut(s)	35, 191
StyI	CCWWGG	1 cut(s)	244
TaiI	ACGT	1 cut(s)	30
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	129, 210, 297
Tru9I	TTAA	3 cut(s)	129, 210, 297
TscAI	CASTG	4 cut(s)	55, 100, 172, 225
TseI	GCWGC	2 cut(s)	176, 229
TspRI	CASTG	4 cut(s)	55, 100, 172, 225
Vha464I	CTTAAG	1 cut(s)	128
XspI	CTAG	2 cut(s)	35, 191
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.