Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014219

Physical Location & Seq

Genomic Coordinates Reverse (-)

19244081 .. 19245518

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCCTTGCCTTTACATCTCCACAAACGTCACCCTTGACGGAGTCGACACTGGTTCCATCTTTTCCGAAGCCACCAAAGCCATCTCTGACATTACCGGAAAGCCCGAAGACTTTGTGATGGTCTTACTTAAGGGATCGGTGCCCATATCGTTTGGCAAGAGTACTACTATACCGGCAGCATATGGGGAGTTAGTAGCAATGGGCGGCATTACCACGGCAGTGAAGAGGCTACTGATCGCCACTCTCGGCACGATTTTTGAGTCCAAGCTTTTGATCCCAAAAACTCGATTTTTCCTTAAAGTTGTTGATGTAAGCACTGCTACAGGATCTAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 map00350 map00360

Pfam Domains

Protein Families

MIF

Protein Analysis

113

Amino Acids

11.79

Weight (kDa)

8.79

Isoelectric Point (pI)

9.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51660
fragaria_vesca	FvH4_6g10610
malus_domestica	MD04G1166700.v1.1 MD12G1179700.v1.1
prunus_persica	Prupe.6G284900_v2.0.a1
pyrus_communis	pycom04g14810 pycom12g16980
rosa_chinensis	RchiOBHm_Chr3g0461611
rosa_laevigata	RLG00000024914
rosa_multiflora	Rmu_sc0003578.1_g000004
rosa_roxburghii	Rroxscaffold_6G00418100 Rroxscaffold_6G00418470
rosa_rugosa	Rorug03G0052400
rosa_samantha	Rh3AG110500 Rh3CG115600 Rh3DG115500
rosa_wichuraiana	Rw3G009350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	3 cut(s)	142, 268, 334
AfaI	GTAC	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
AlwI	GGATC	3 cut(s)	142, 268, 334
ApeKI	GCWGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	3 cut(s)	65, 89, 112
BceAI	ACGGC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	177, 205
BlsI	GCNGC	2 cut(s)	178, 206
BmcAI	AGTACT	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	55, 141
BpiI	GAAGAC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	96, 173
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	134, 234, 273, 326
BspACI	CCGC	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	55, 141
BspPI	GGATC	3 cut(s)	142, 268, 334
BspT107I	GGYRCC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	4 cut(s)	134, 234, 273, 326
Bst6I	CTCTTC	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	213
BstKTI	GATC	4 cut(s)	137, 237, 276, 329
BstMBI	GATC	4 cut(s)	134, 234, 273, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	2 cut(s)	225, 315
BtsIMutI	CAGTG	3 cut(s)	48, 225, 315
Cfr10I	RCCGGY	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	162
CviJI	RGCY	5 cut(s)	71, 80, 103, 229, 268
CviKI_1	RGCY	5 cut(s)	71, 80, 103, 229, 268
CviQI	GTAC	1 cut(s)	162
DpnI	GATC	4 cut(s)	136, 236, 275, 328
DpnII	GATC	4 cut(s)	134, 234, 273, 326
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
FaiI	YATR	5 cut(s)	146, 170, 181, 183, 337
FauNDI	CATATG	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	177, 205
Fsp4HI	GCNGC	2 cut(s)	177, 205
GluI	GCNGC	2 cut(s)	177, 205
HapII	CCGG	2 cut(s)	96, 173
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	42, 260
HpaII	CCGG	2 cut(s)	96, 173
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	67, 88
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	134, 234, 273, 326
LpnPI	CCDG	4 cut(s)	36, 109, 186, 309
Lsp1109I	GCAGC	1 cut(s)	188
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	4 cut(s)	136, 236, 275, 328
MboI	GATC	4 cut(s)	134, 234, 273, 326
MboII	GAAGA	2 cut(s)	119, 235
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	51, 269
MnlI	CCTC	1 cut(s)	219
MseI	TTAA	2 cut(s)	129, 297
MslI	CAYNNNNRTG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	2 cut(s)	96, 173
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	4 cut(s)	134, 234, 273, 326
NlaIV	GGNNCC	2 cut(s)	55, 141
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	178, 206
PleI	GAGTC	2 cut(s)	50, 268
PpsI	GAGTC	2 cut(s)	50, 268
PspN4I	GGNNCC	2 cut(s)	55, 141
PsuI	RGATCY	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	129, 297
SatI	GCNGC	2 cut(s)	177, 205
Sau3AI	GATC	4 cut(s)	134, 234, 273, 326
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	2 cut(s)	51, 269
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	2 cut(s)	30, 270
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	1 cut(s)	204
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	45, 286
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	129, 297
Tru9I	TTAA	2 cut(s)	129, 297
TscAI	CASTG	3 cut(s)	55, 225, 322
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	3 cut(s)	55, 225, 322
Tth111I	GACNNNGTC	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.