Rh3DG115500

Macrophage migration inhibitory

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
9620780 .. 9621016
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG115500.1

Sequence Viewer

Length: 237 bp
ATGCAGCATGTGATGGTGTTACTCAAGGGATCAGTTCCCATATCATTTGGTGCGAGCACTAGCGAACCGGCGGCGTACGGTGAGTTGGTGGCTTTGGGCGGCATTACGAAGGCGGTGAAGCGGGAGCTGATCGCTACGCTCGGCATAATTCTGCAGAACTCGAAGCTTGGCATCCCCCGGACTCGTTTTTTCCTTAAAGTTGTTGATGTAAGTACTCCTATGGGATCCAAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.25

Weight (kDa)

10.12

Isoelectric Point (pI)

13.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51660
fragaria_vesca FvH4_6g10610
malus_domestica MD04G1166700.v1.1 MD12G1179700.v1.1
prunus_persica Prupe.6G284900_v2.0.a1
pyrus_communis pycom04g14810 pycom12g16980
rosa_chinensis RchiOBHm_Chr3g0461611
rosa_laevigata RLG00000024914
rosa_multiflora Rmu_sc0003578.1_g000004
rosa_roxburghii Rroxscaffold_6G00418100 Rroxscaffold_6G00418470
rosa_rugosa Rorug03G0052400
rosa_samantha Rh3AG110500 Rh3CG115600 Rh3DG115500
rosa_wichuraiana Rw3G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 71, 99, 113, 121
AclWI GGATC 3 cut(s) 37, 219, 232
AfaI GTAC 2 cut(s) 77, 214
AluBI AGCT 2 cut(s) 127, 166
AluI AGCT 2 cut(s) 127, 166
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 3 cut(s) 37, 219, 232
ApeKI GCWGC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 92, 127
BamHI GGATCC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 7
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 152
BisI GCNGC 3 cut(s) 5, 72, 100
BlsI GCNGC 3 cut(s) 6, 73, 101
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 68, 178
BsiWI CGTACG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 29, 129, 224
BspACI CCGC 4 cut(s) 71, 99, 113, 121
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 156
BspPI GGATC 3 cut(s) 37, 219, 232
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 3 cut(s) 29, 129, 224
Bst4CI ACNGT 2 cut(s) 80, 234
BstC8I GCNNGC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 3 cut(s) 32, 132, 227
BstMBI GATC 3 cut(s) 29, 129, 224
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 67
Csp6I GTAC 2 cut(s) 76, 213
CviAII CATG 1 cut(s) 8
CviJI RGCY 3 cut(s) 92, 127, 166
CviKI_1 RGCY 3 cut(s) 92, 127, 166
CviQI GTAC 2 cut(s) 76, 213
DpnI GATC 3 cut(s) 31, 131, 226
DpnII GATC 3 cut(s) 29, 129, 224
FaeI CATG 1 cut(s) 11
FaiI YATR 4 cut(s) 9, 41, 146, 221
FatI CATG 1 cut(s) 7
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 5, 72, 100
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 5, 72, 100
FspBI CTAG 1 cut(s) 60
GluI GCNGC 3 cut(s) 5, 72, 100
HapII CCGG 2 cut(s) 68, 178
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 68, 178
HphI GGTGA 2 cut(s) 92, 127
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 80, 234
HpyCH4V TGCA 2 cut(s) 4, 154
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 3 cut(s) 29, 129, 224
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 81, 191
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 18
MalI GATC 3 cut(s) 31, 131, 226
MboI GATC 3 cut(s) 29, 129, 224
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 175
MseI TTAA 1 cut(s) 195
MspI CCGG 2 cut(s) 68, 178
MspR9I CCNGG 1 cut(s) 178
NciI CCSGG 1 cut(s) 178
NdeII GATC 3 cut(s) 29, 129, 224
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 120
NspI RCATGY 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 75
PkrI GCNGC 3 cut(s) 6, 73, 101
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspLI CGTACG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 2 cut(s) 77, 214
RsaNI GTAC 2 cut(s) 76, 213
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 5, 72, 100
Sau3AI GATC 3 cut(s) 29, 129, 224
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 59
SetI ASST 2 cut(s) 129, 168
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 147
SsiI CCGC 4 cut(s) 71, 99, 113, 121
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 80, 234
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 147
TatI WGTACW 1 cut(s) 212
TauI GCSGC 2 cut(s) 74, 102
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 4
XceI RCATGY 1 cut(s) 11
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.