Prupe.6G285400_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018522
Physical Location & Seq
Reverse (-)
26481396 .. 26482762
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G285400.1

Sequence Viewer

Length: 1173 bp
ATGGCTCAAACCAATCCAAGCAGAAAAGTTCACGACTGGTCGAGTCTTCATCAAGATATTGTCGACTCGATCGCCAAACGAATAGTCTCTCGGGCAGATTTGATTGCTTTTGCCGCAGTTTGTAAAGCATGGAGATCAGCCGCCATCAAAGAATACTTTACCAGCCGATCAACACTGAAATCTCCAGTGCTGATGATCCAAGCCAAGAACAAGGAGAAGGGCACTCTCACCCCTGAATTCTACAACAGCTCAAAGAGTACATGGTCAAAGGGTACGTTTCACAAACTTGGTCTGCTAGCACCCAAGAAAACAAAGCAGTCTTTTTATTCTTCTCTAGGCTGGCTGGTGGCTGTGTCTGAGGATTTGAAGGTTGATCTGCTGCACCCTTTAAGCCATGCCCAGATTGAACTTCCAGATATTAACAAAGTCAGAAACCATCACCAGCAACAGAGCTTTTCTGGCGTGCCGTACGAGTTCATAGCTAGTAAGTTTGTCTTGTCATCAAGCCCTTCTTGGACGTGTGGTTATATAGTGACTGTTATTTATAGGATTTTGGGAGGCTGGGGATTTTGGAGACCAGGAGAAGATGAATGGACCAGTGTGGGAAGGAATATAATGGATCTTGCTTATTATAAAGGGCAGTTTTATGCTGTGGACTTTGATGGGAATATAATGGTTTGTGAGATTGCAGAGCCTGAGCAACCAAAAATGAGGATTGTTGTTCCGAAAGTGCCAATGGAACCCATGTGTGCTTCTGTTGATCAAAGCCTTTATCTGGTGGAATCACAGGGGGCCTTGTTGGTGGTTCTGCGTCTTAGGCAATGGTTCAGTTCGACAACTGAGTTTAGGGTTTTCAGTGTGCCATTGGAGGGTTGTGGCAAGTGCTGGTGCCATTGGTCGGATTTGCAGGTAAAGAACTTGGGTGACAGTACCCTATTTCTGGGACGCCATAATTCTTCATTCTCTATCGAATGCAAGAATAACAAGAACTTTGTATGTTTGGGGAATAGCATTTGCTTCACGGTTGATTTTTGTGAGTGTCTTGCACTTACCAATGGAGATATGGACGCCAGTTATTTTGTTTTCAATATGACAGACGGGAAACTCAAGCCTTGCTTGGGCAAACGCCTCAATTTAAGAGCGCCATATTTATGGATTCAAGCACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

391

Amino Acids

44.14

Weight (kDa)

8.77

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018522)

Species Orthologous Gene IDs
prunus_persica Prupe.6G285400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0284411 RchiOBHm_Chr6g0284431
rosa_laevigata RLG00000012746 RLG00000024920
rosa_multiflora Rmu_sc0000614.1_g000003 Rmu_sc0004274.1_g000001
rosa_roxburghii Rroxscaffold_1G00014080 Rroxscaffold_6G00418520
rosa_rugosa Rorug03G0051900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 898
AccB1I GGYRCC 1 cut(s) 888
AccI GTMKAC 1 cut(s) 63
AciI CCGC 2 cut(s) 114, 141
AclWI GGATC 2 cut(s) 190, 627
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 2 cut(s) 946, 1068
AfaI GTAC 4 cut(s) 259, 274, 470, 931
AfiI CCNNNNNNNGG 5 cut(s) 775, 869, 898, 940, 1118
AflIII ACRYGT 1 cut(s) 518
AgsI TTSAA 4 cut(s) 367, 407, 1087, 1160
AjiI CACGTC 1 cut(s) 519
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 3 cut(s) 249, 453, 482
AluI AGCT 3 cut(s) 249, 453, 482
Alw26I GTCTC 2 cut(s) 91, 568
AlwI GGATC 2 cut(s) 190, 627
AlwNI CAGNNNCTG 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 792
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspLEI GCGC 1 cut(s) 1144
AspS9I GGNCC 2 cut(s) 594, 792
AsuHPI GGTGA 3 cut(s) 220, 431, 935
AsuNHI GCTAGC 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 594
BaeGI GKGCMC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 888
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 366
BccI CCATC 3 cut(s) 152, 444, 656
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 579
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 91, 568
BfaI CTAG 3 cut(s) 296, 335, 483
BfoI RGCGCY 1 cut(s) 1145
BfuAI ACCTGC 1 cut(s) 898
BisI GCNGC 3 cut(s) 114, 141, 380
BlsI GCNGC 3 cut(s) 115, 142, 381
Bme1390I CCNGG 1 cut(s) 579
Bme18I GGWCC 1 cut(s) 594
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 594, 792
BmiI GGNNCC 3 cut(s) 741, 793, 890
BmrFI CCNGG 1 cut(s) 579
BmtI GCTAGC 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 1091
BsaHI GRCGYC 2 cut(s) 946, 1068
BsaI GGTCTC 1 cut(s) 568
Bsc4I CCNNNNNNNGG 5 cut(s) 775, 869, 898, 940, 1118
Bse1I ACTGG 4 cut(s) 41, 185, 597, 1071
Bse3DI GCAATG 1 cut(s) 827
BseBI CCWGG 1 cut(s) 579
BseLI CCNNNNNNNGG 5 cut(s) 775, 869, 898, 940, 1118
BseMI GCAATG 1 cut(s) 827
BseMII CTCAG 3 cut(s) 348, 687, 831
BseNI ACTGG 4 cut(s) 41, 185, 597, 1071
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 1 cut(s) 366
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 794
BshNI GGYRCC 1 cut(s) 888
BsiEI CGRYCG 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 90
BsiWI CGTACG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 957
BslI CCNNNNNNNGG 5 cut(s) 775, 869, 898, 940, 1118
BsmAI GTCTC 2 cut(s) 91, 568
BsmFI GGGAC 1 cut(s) 957
BsmI GAATGC 1 cut(s) 977
BsnI GGCC 1 cut(s) 794
Bso31I GGTCTC 1 cut(s) 568
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
BspACI CCGC 2 cut(s) 114, 141
BspANI GGCC 1 cut(s) 794
BspCNI CTCAG 3 cut(s) 349, 688, 832
BspLI GGNNCC 3 cut(s) 741, 793, 890
BspMI ACCTGC 1 cut(s) 898
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 2 cut(s) 190, 627
BspT107I GGYRCC 1 cut(s) 888
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 827
BsrI ACTGG 4 cut(s) 41, 185, 597, 1071
BssMI GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
BssNI GRCGYC 2 cut(s) 946, 1068
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 3 cut(s) 538, 929, 1024
BstACI GRCGYC 2 cut(s) 946, 1068
BstC8I GCNNGC 3 cut(s) 297, 341, 464
BstDEI CTNAG 4 cut(s) 357, 696, 815, 840
BstH2I RGCGCY 1 cut(s) 1145
BstHHI GCGC 1 cut(s) 1144
BstKTI GATC 7 cut(s) 72, 137, 170, 198, 376, 622, 763
BstMAI GTCTC 2 cut(s) 91, 568
BstMBI GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 113, 459, 817
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 1152
BstYI RGATCY 1 cut(s) 619
BsuRI GGCC 1 cut(s) 794
BtrI CACGTC 1 cut(s) 519
BtsIMutI CAGTG 4 cut(s) 173, 192, 604, 862
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 3 cut(s) 297, 341, 464
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 1 cut(s) 1144
Cfr13I GGNCC 2 cut(s) 594, 792
CseI GACGC 3 cut(s) 800, 954, 1076
Csp6I GTAC 4 cut(s) 258, 273, 469, 930
CviAII CATG 4 cut(s) 129, 261, 395, 745
CviQI GTAC 4 cut(s) 258, 273, 469, 930
DdeI CTNAG 4 cut(s) 357, 696, 815, 840
DpnI GATC 7 cut(s) 71, 136, 169, 197, 375, 621, 762
DpnII GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 792
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 577
FaeI CATG 4 cut(s) 132, 264, 398, 748
FalI AAGNNNNNCTT 6 cut(s) 479, 511, 496, 528, 1100, 1132
FaqI GGGAC 1 cut(s) 957
FatI CATG 4 cut(s) 128, 260, 394, 744
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 114, 141, 380
Fsp4HI GCNGC 3 cut(s) 114, 141, 380
FspBI CTAG 3 cut(s) 296, 335, 483
GlaI GCGC 1 cut(s) 1143
GluI GCNGC 3 cut(s) 114, 141, 380
GsaI CCCAGC 1 cut(s) 565
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 1145
HaeIII GGCC 1 cut(s) 794
HgaI GACGC 3 cut(s) 800, 954, 1076
HhaI GCGC 1 cut(s) 1144
Hin1I GRCGYC 2 cut(s) 946, 1068
Hin1II CATG 4 cut(s) 132, 264, 398, 748
Hin6I GCGC 1 cut(s) 1142
HinP1I GCGC 1 cut(s) 1142
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 43, 65, 782, 1156
HphI GGTGA 3 cut(s) 220, 431, 935
Hpy166II GTNNAC 3 cut(s) 31, 64, 655
Hpy188I TCNGA 4 cut(s) 358, 431, 726, 901
Hpy188III TCNNGA 3 cut(s) 32, 53, 413
Hpy8I GTNNAC 3 cut(s) 31, 64, 655
HpyAV CCTTC 4 cut(s) 211, 361, 519, 600
HpyCH4III ACNGT 3 cut(s) 538, 929, 1024
HpyCH4IV ACGT 2 cut(s) 275, 518
HpyCH4V TGCA 5 cut(s) 382, 689, 907, 975, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 459, 817
HpyF3I CTNAG 4 cut(s) 357, 696, 815, 840
HpySE526I ACGT 2 cut(s) 275, 518
Hsp92I GRCGYC 2 cut(s) 946, 1068
Hsp92II CATG 4 cut(s) 132, 264, 398, 748
HspAI GCGC 1 cut(s) 1142
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
Lsp1109I GCAGC 1 cut(s) 366
MaeI CTAG 3 cut(s) 296, 335, 483
MaeII ACGT 2 cut(s) 275, 518
MaeIII GTNAC 2 cut(s) 532, 923
MalI GATC 7 cut(s) 71, 136, 169, 197, 375, 621, 762
MboI GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
MboII GAAGA 4 cut(s) 38, 321, 596, 948
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 3 cut(s) 236, 952, 1132
MlyI GAGTC 2 cut(s) 52, 59
MmeI TCCRAC 1 cut(s) 879
MnlI CCTC 5 cut(s) 352, 551, 705, 862, 1139
MseI TTAA 4 cut(s) 389, 420, 1136, 1171
MslI CAYNNNNRTG 1 cut(s) 1150
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 3 cut(s) 113, 459, 817
NdeII GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 4 cut(s) 132, 264, 398, 748
NlaIV GGNNCC 3 cut(s) 741, 793, 890
NmuCI GTSAC 2 cut(s) 532, 923
PctI GAATGC 1 cut(s) 977
PfeI GAWTC 2 cut(s) 782, 1156
Pfl23II CGTACG 1 cut(s) 468
PkrI GCNGC 3 cut(s) 115, 142, 381
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 2 cut(s) 51, 59
PpsI GAGTC 2 cut(s) 51, 59
PsiI TTATAA 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 1 cut(s) 577
PspLI CGTACG 1 cut(s) 468
PspN4I GGNNCC 3 cut(s) 741, 793, 890
PspPI GGNCC 2 cut(s) 594, 792
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 619
PvuI CGATCG 1 cut(s) 72
RsaI GTAC 4 cut(s) 259, 274, 470, 931
RsaNI GTAC 4 cut(s) 258, 273, 469, 930
RseI CAYNNNNRTG 1 cut(s) 1150
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 389, 420, 1136, 1171
SatI GCNGC 3 cut(s) 114, 141, 380
Sau3AI GATC 7 cut(s) 69, 134, 167, 195, 373, 619, 760
Sau96I GGNCC 2 cut(s) 594, 792
SchI GAGTC 2 cut(s) 52, 59
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 251, 278, 372, 455, 484, 521, 912
SinI GGWCC 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 1150
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
Sse9I AATT 3 cut(s) 236, 952, 1132
SsiI CCGC 2 cut(s) 114, 141
SspMI CTAG 3 cut(s) 296, 335, 483
StyD4I CCNGG 1 cut(s) 577
TaaI ACNGT 3 cut(s) 538, 929, 1024
TaiI ACGT 2 cut(s) 278, 521
TaqI TCGA 5 cut(s) 41, 63, 68, 833, 969
TasI AATT 3 cut(s) 236, 952, 1132
TatI WGTACW 1 cut(s) 257
TauI GCSGC 2 cut(s) 116, 143
TfiI GAWTC 2 cut(s) 782, 1156
Tru1I TTAA 4 cut(s) 389, 420, 1136, 1171
Tru9I TTAA 4 cut(s) 389, 420, 1136, 1171
TscAI CASTG 4 cut(s) 180, 192, 604, 862
TseFI GTSAC 2 cut(s) 532, 923
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 2 cut(s) 532, 923
TspDTI ATGAA 4 cut(s) 38, 466, 603, 948
TspRI CASTG 4 cut(s) 180, 192, 604, 862
VpaK11BI GGWCC 1 cut(s) 594
XapI RAATTY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 3 cut(s) 296, 335, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.