Rroxscaffold_6G00418520

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018522
Physical Location & Seq
Reverse (-)
40052780 .. 40053989
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418520.1

Sequence Viewer

Length: 459 bp
ATGAAAGAACTTGGGTTGGATGGAGCTCGGGTGAGAGATTGCAGGATTCCTACGGGGATGGCTGATTGGTCGGGTCTTCATCAAGACCTTGTTATCTGTATTGCCAAACAGATAGTCTTCTTGAAAGATTTCCATGCTTCTGGTGCAGTTTGTAAACCATGGACATCCGCCGCCACCAAAGATAACTTCACAGGTCCACCTCCTCTCCTTATGGTCTCAGGGTGGAACGGAAGTAGTACTGAAGCCAATATCCGCAAACTTGTCCACTTAAAAGATCGGCCAGAGATATATATGAATTATAAGAAGCAGCGTTGTTGTTATTATTCTTCCCTAGGATGGTTGATGAGTATATCTGAAGATTTCAAGGTTAATTTGTTGAACCCTTTTGATCACCATGCCCGAATCAAGCTGCCGGATATTAACATGCTTAAAGGCTTAAAGCTAGTGTTGGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

152

Amino Acids

17.25

Weight (kDa)

9.15

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018522)

Species Orthologous Gene IDs
prunus_persica Prupe.6G285400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0284411 RchiOBHm_Chr6g0284431
rosa_laevigata RLG00000012746 RLG00000024920
rosa_multiflora Rmu_sc0000614.1_g000003 Rmu_sc0004274.1_g000001
rosa_roxburghii Rroxscaffold_1G00014080 Rroxscaffold_6G00418520
rosa_rugosa Rorug03G0051900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AciI CCGC 3 cut(s) 168, 171, 253
AcoI YGGCCR 1 cut(s) 278
AcuI CTGAAG 2 cut(s) 261, 375
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 3 cut(s) 124, 364, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 3 cut(s) 26, 409, 442
AluI AGCT 3 cut(s) 26, 409, 442
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 307, 409
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
Asp700I GAANNNNTTC 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 43, 383
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 194
AvrII CCTAGG 1 cut(s) 331
BanII GRGCYC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 68, 109
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 319, 396
BccI CCATC 3 cut(s) 14, 52, 330
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 2 cut(s) 332, 443
BisI GCNGC 3 cut(s) 171, 308, 410
BlnI CCTAGG 1 cut(s) 331
BlsI GCNGC 3 cut(s) 172, 309, 411
BmcAI AGTACT 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 194
BpiI GAAGAC 2 cut(s) 68, 109
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 158, 331
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 158, 331
BseGI GGATG 4 cut(s) 25, 63, 164, 341
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 319, 396
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 274, 388
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 3 cut(s) 168, 171, 253
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 158, 331
BssMI GATC 2 cut(s) 274, 388
BssT1I CCWWGG 2 cut(s) 158, 331
BstDEI CTNAG 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 4 cut(s) 25, 63, 164, 341
BstKTI GATC 2 cut(s) 277, 391
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 2 cut(s) 274, 388
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 319, 396
BstV2I GAAGAC 2 cut(s) 68, 109
BstXI CCANNNNNNTGG 1 cut(s) 140
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 4 cut(s) 25, 63, 164, 341
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 237
CviAII CATG 4 cut(s) 134, 159, 395, 424
CviJI RGCY 7 cut(s) 26, 62, 245, 280, 409, 435, 442
CviKI_1 RGCY 7 cut(s) 26, 62, 245, 280, 409, 435, 442
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 217
DpnI GATC 2 cut(s) 276, 390
DpnII GATC 2 cut(s) 274, 388
EaeI YGGCCR 1 cut(s) 278
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 158, 331
Eco24I GRGCYC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 261, 375
Eco88I CYCGRG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 26
EcoT14I CCWWGG 2 cut(s) 158, 331
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 2 cut(s) 158, 331
FaeI CATG 4 cut(s) 137, 162, 398, 427
FatI CATG 4 cut(s) 133, 158, 394, 423
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 3 cut(s) 171, 308, 410
FokI GGATG 4 cut(s) 32, 70, 151, 348
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 171, 308, 410
FspBI CTAG 2 cut(s) 332, 443
GluI GCNGC 3 cut(s) 171, 308, 410
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 413
Hin1II CATG 4 cut(s) 137, 162, 398, 427
HinfI GANTC 2 cut(s) 46, 402
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 43, 383
Hpy166II GTNNAC 3 cut(s) 155, 197, 265
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 83, 121
Hpy8I GTNNAC 3 cut(s) 155, 197, 265
HpyCH4V TGCA 2 cut(s) 42, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 217
Hsp92II CATG 4 cut(s) 137, 162, 398, 427
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 2 cut(s) 274, 388
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 6 cut(s) 28, 126, 177, 204, 294, 426
Lsp1109I GCAGC 2 cut(s) 319, 396
MaeI CTAG 2 cut(s) 332, 443
MalI GATC 2 cut(s) 276, 390
MboI GATC 2 cut(s) 274, 388
MboII GAAGA 4 cut(s) 68, 109, 318, 368
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 295, 370
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 3 cut(s) 210, 213, 447
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 5 cut(s) 269, 369, 420, 429, 437
MspI CCGG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 143
NcoI CCATGG 1 cut(s) 158
NdeII GATC 2 cut(s) 274, 388
NlaIII CATG 4 cut(s) 137, 162, 398, 427
NspI RCATGY 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 46, 402
PkrI GCNGC 3 cut(s) 172, 309, 411
PsiI TTATAA 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SacI GAGCTC 1 cut(s) 28
SaqAI TTAA 5 cut(s) 269, 369, 420, 429, 437
SatI GCNGC 3 cut(s) 171, 308, 410
Sau3AI GATC 2 cut(s) 274, 388
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 238
SduI GDGCHC 1 cut(s) 28
SetI ASST 8 cut(s) 28, 90, 196, 202, 369, 411, 444, 458
SinI GGWCC 1 cut(s) 194
Sse9I AATT 2 cut(s) 295, 370
SsiI CCGC 3 cut(s) 168, 171, 253
SspMI CTAG 2 cut(s) 332, 443
SstI GAGCTC 1 cut(s) 28
StyI CCWWGG 2 cut(s) 158, 331
TasI AATT 2 cut(s) 295, 370
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 2 cut(s) 46, 402
Tru1I TTAA 5 cut(s) 269, 369, 420, 429, 437
Tru9I TTAA 5 cut(s) 269, 369, 420, 429, 437
TseI GCWGC 2 cut(s) 307, 409
TspDTI ATGAA 3 cut(s) 17, 68, 308
TspGWI ACGGA 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 332, 443
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.