RchiOBHm_Chr6g0284411

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018522
Physical Location & Seq
Reverse (-)
47647083 .. 47648132
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25504

Sequence Viewer

Length: 1050 bp
ATGATGGCTGAAGAAAAGTTTATCGGAATCTGTGCATCTCCACTCTTTATGTTCTCATACTCGGACCCGGACAGTCCTAGTTCTCAAGCCAATATCCGTGAACTTTTAAACCTAACAGAAGATCGGCCGGAGCTAAATATCAATAAGAACCAGCGCTGTTCCTATTATTCTTCTCTAGGATGCTTGATGACTATATCTGAAGACTACAAGGTTAATTTGTTGAACCCTTTGGATCATCATCGTGCTCAAATCAAGCTACCAGATATTAACATGGTTAAAACTAGTGTTGAAGGGATTAACTCTGGACTGATGAGGTGGTATGACGATATGATTACCAAGTTTGTCTTATCGTCGAACCCTTTTTCGTCACTGGAATGCTTGGTTCTGGTAAGTTATGCGACTGCCACAGTTACCGGTTGGGGGTTTTGCAGACTAGGAGAAGATACATGGACGTACGTAGCCTGGACTCCAATACTCGATTTAATTTATCACAACGGGCAGTTTTATGCGATGGACTGTAGTGGCAAAATCTTGGTTTGTGATGTTGAAGACCCAAAGCAACCAAAGACAACTATTTTACTATCAAAGAAGATACCAATGGTACCTATGTATGGGCAGACTACTAGTCAAAGCTTGTACATGGTAGAATCAGCAGGGGCCTTGTTGGTGGTTCTGCAATCTAGGCCAAGAATTGGATCAATTGAAACCACCAGGTTTAAGGTATTTGAGGTGCCGTTCGGTAGAGACCAGGCGTGGGAGTGGTCAGATTTGGAGGTAAAGAATTTGGAGAATAGAAGTCTATTCTTGGGATGTGAAAGTTCTTCATTCTCTGTTGATGGCTCAGACTACTGCTCTGCAGGATGCAAAGCCAATTGCATATACTTCAACACTAAATGGTGGGAGTGGCTTTCAATTCCAAATTCAAACTTTGCTCCGGCTGTTTTTATCTTTAACATGGAAGATGAAAAGGTGGAGCAACTTTCAGTACCTAATATTTTACAAGCCCCACTACCTACTTCATGGATACAACCACAACCACCAAGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

349

Amino Acids

39.48

Weight (kDa)

4.8

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 43 - 296 9.5e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018522)

Species Orthologous Gene IDs
prunus_persica Prupe.6G285400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0284411 RchiOBHm_Chr6g0284431
rosa_laevigata RLG00000012746 RLG00000024920
rosa_multiflora Rmu_sc0000614.1_g000003 Rmu_sc0004274.1_g000001
rosa_roxburghii Rroxscaffold_1G00014080 Rroxscaffold_6G00418520
rosa_rugosa Rorug03G0051900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 601
AccB1I GGYRCC 2 cut(s) 601, 730
AccB7I CCANNNNNTGG 1 cut(s) 692
AclWI GGATC 2 cut(s) 240, 703
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 2 cut(s) 781, 919
AcuI CTGAAG 2 cut(s) 30, 219
AfaI GTAC 4 cut(s) 455, 603, 638, 987
AfeI AGCGCT 1 cut(s) 155
AfiI CCNNNNNNNGG 4 cut(s) 420, 611, 692, 754
AgeI ACCGGT 1 cut(s) 413
AgsI TTSAA 7 cut(s) 223, 290, 548, 704, 886, 912, 924
AhdI GACNNNNNGTC 1 cut(s) 624
AhlI ACTAGT 2 cut(s) 281, 623
AjnI CCWGG 3 cut(s) 461, 710, 747
AluBI AGCT 3 cut(s) 133, 256, 633
AluI AGCT 3 cut(s) 133, 256, 633
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 738
AlwI GGATC 2 cut(s) 240, 703
Aor51HI AGCGCT 1 cut(s) 155
AoxI GGCC 3 cut(s) 125, 657, 683
ApoI RAATTY 2 cut(s) 781, 919
AsiGI ACCGGT 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 601
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 64, 657
AsuC2I CCSGG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 64
BaeI ACNNNNGTAYC 2 cut(s) 593, 626
BanI GGYRCC 2 cut(s) 601, 730
BbsI GAAGAC 2 cut(s) 207, 555
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 2 cut(s) 505, 830
BceAI ACGGC 1 cut(s) 718
BciT130I CCWGG 3 cut(s) 463, 712, 749
BciVI GTATCC 1 cut(s) 1017
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 738
BcuI ACTAGT 2 cut(s) 281, 623
BfaI CTAG 6 cut(s) 78, 176, 282, 434, 624, 681
BfmI CTRYAG 2 cut(s) 517, 855
BfoI RGCGCY 1 cut(s) 157
BfuI GTATCC 1 cut(s) 1017
Bme1390I CCNGG 4 cut(s) 68, 463, 712, 749
Bme18I GGWCC 1 cut(s) 64
BmeRI GACNNNNNGTC 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 64, 657
BmiI GGNNCC 4 cut(s) 66, 603, 658, 732
BmrFI CCNGG 4 cut(s) 68, 463, 712, 749
BmsI GCATC 3 cut(s) 44, 170, 851
BpiI GAAGAC 2 cut(s) 207, 555
BpuEI CTTGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 738
BsaWI WCCGGW 1 cut(s) 413
Bsc4I CCNNNNNNNGG 4 cut(s) 420, 611, 692, 754
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 3 cut(s) 463, 712, 749
BseGI GGATG 3 cut(s) 185, 815, 866
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 4 cut(s) 420, 611, 692, 754
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 1 cut(s) 375
BseX3I CGGCCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 127, 659, 685
BshNI GGYRCC 2 cut(s) 601, 730
BshTI ACCGGT 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 4 cut(s) 68, 128, 414, 935
BsiWI CGTACG 1 cut(s) 453
BslI CCNNNNNNNGG 4 cut(s) 420, 611, 692, 754
BsmAI GTCTC 1 cut(s) 738
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 3 cut(s) 127, 659, 685
Bso31I GGTCTC 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 3 cut(s) 121, 232, 695
BspANI GGCC 3 cut(s) 127, 659, 685
BspCNI CTCAG 1 cut(s) 854
BspLI GGNNCC 4 cut(s) 66, 603, 658, 732
BspMAI CTGCAG 1 cut(s) 859
BspPI GGATC 2 cut(s) 240, 703
BspT107I GGYRCC 2 cut(s) 601, 730
BspTNI GGTCTC 1 cut(s) 738
BsrFI RCCGGY 1 cut(s) 413
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 1 cut(s) 413
BssMI GATC 3 cut(s) 121, 232, 695
Bst2UI CCWGG 3 cut(s) 463, 712, 749
Bst4CI ACNGT 3 cut(s) 74, 409, 518
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 841
BstF5I GGATG 3 cut(s) 185, 815, 866
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 3 cut(s) 124, 235, 698
BstMAI GTCTC 1 cut(s) 738
BstMBI GATC 3 cut(s) 121, 232, 695
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 682
BstNI CCWGG 3 cut(s) 463, 712, 749
BstSCI CCNGG 4 cut(s) 66, 461, 710, 747
BstSFI CTRYAG 2 cut(s) 517, 855
BstSNI TACGTA 1 cut(s) 457
BstV2I GAAGAC 2 cut(s) 207, 555
BstZI CGGCCG 1 cut(s) 125
BsuI GTATCC 1 cut(s) 1017
BsuRI GGCC 3 cut(s) 127, 659, 685
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 3 cut(s) 185, 815, 866
BtsIMutI CAGTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 64, 657
CsiI ACCWGGT 1 cut(s) 710
Csp6I GTAC 4 cut(s) 454, 602, 637, 986
CspAI ACCGGT 1 cut(s) 413
CviAII CATG 5 cut(s) 271, 447, 640, 955, 1020
CviQI GTAC 4 cut(s) 454, 602, 637, 986
DdeI CTNAG 1 cut(s) 841
DpnI GATC 3 cut(s) 123, 234, 697
DpnII GATC 3 cut(s) 121, 232, 695
DraI TTTAAA 1 cut(s) 108
DriI GACNNNNNGTC 1 cut(s) 624
EaeI YGGCCR 1 cut(s) 125
EagI CGGCCG 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 624
EclXI CGGCCG 1 cut(s) 125
Eco105I TACGTA 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 738
Eco47I GGWCC 1 cut(s) 64
Eco47III AGCGCT 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 125
Eco57I CTGAAG 2 cut(s) 30, 219
EcoO109I RGGNCCY 1 cut(s) 657
EcoRII CCWGG 3 cut(s) 461, 710, 747
FaeI CATG 5 cut(s) 274, 450, 643, 958, 1023
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 5 cut(s) 270, 446, 639, 954, 1019
FokI GGATG 3 cut(s) 192, 822, 873
FspBI CTAG 6 cut(s) 78, 176, 282, 434, 624, 681
GlaI GCGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 3 cut(s) 127, 659, 685
HapII CCGG 4 cut(s) 68, 128, 414, 935
HhaI GCGC 1 cut(s) 156
Hin1II CATG 5 cut(s) 274, 450, 643, 958, 1023
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 3 cut(s) 27, 466, 647
HpaII CCGG 4 cut(s) 68, 128, 414, 935
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 5 cut(s) 26, 64, 199, 766, 844
Hpy188III TCNNGA 1 cut(s) 303
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 3 cut(s) 74, 409, 518
HpyCH4IV ACGT 2 cut(s) 452, 456
HpyCH4V TGCA 6 cut(s) 35, 429, 676, 857, 864, 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 682
HpyF3I CTNAG 1 cut(s) 841
HpySE526I ACGT 2 cut(s) 452, 456
Hsp92II CATG 5 cut(s) 274, 450, 643, 958, 1023
HspAI GCGC 1 cut(s) 154
KpnI GGTACC 1 cut(s) 605
Kzo9I GATC 3 cut(s) 121, 232, 695
LmnI GCTCC 3 cut(s) 130, 937, 973
LweI GCATC 3 cut(s) 44, 170, 851
MabI ACCWGGT 1 cut(s) 710
MaeI CTAG 6 cut(s) 78, 176, 282, 434, 624, 681
MaeII ACGT 2 cut(s) 452, 456
MaeIII GTNAC 2 cut(s) 366, 409
MalI GATC 3 cut(s) 123, 234, 697
MboI GATC 3 cut(s) 121, 232, 695
MboII GAAGA 9 cut(s) 23, 131, 162, 212, 452, 560, 601, 813, 971
MfeI CAATTG 2 cut(s) 699, 871
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 8 cut(s) 214, 483, 690, 699, 781, 871, 912, 919
MlyI GAGTC 1 cut(s) 460
MnlI CCTC 3 cut(s) 306, 721, 766
MseI TTAA 8 cut(s) 107, 213, 267, 276, 297, 482, 717, 951
MslI CAYNNNNRTG 2 cut(s) 240, 373
MspI CCGG 4 cut(s) 68, 128, 414, 935
MspR9I CCNGG 4 cut(s) 68, 463, 712, 749
MunI CAATTG 2 cut(s) 699, 871
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 3 cut(s) 463, 712, 749
MwoI GCNNNNNNNGC 1 cut(s) 682
NciI CCSGG 1 cut(s) 68
NdeII GATC 3 cut(s) 121, 232, 695
NlaIII CATG 5 cut(s) 274, 450, 643, 958, 1023
NlaIV GGNNCC 4 cut(s) 66, 603, 658, 732
NmuCI GTSAC 1 cut(s) 366
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 27, 647
Pfl23II CGTACG 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 692
PinAI ACCGGT 1 cut(s) 413
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 457
Psp6I CCWGG 3 cut(s) 461, 710, 747
PspGI CCWGG 3 cut(s) 461, 710, 747
PspLI CGTACG 1 cut(s) 453
PspN4I GGNNCC 4 cut(s) 66, 603, 658, 732
PspPI GGNCC 2 cut(s) 64, 657
PstI CTGCAG 1 cut(s) 859
RsaI GTAC 4 cut(s) 455, 603, 638, 987
RsaNI GTAC 4 cut(s) 454, 602, 637, 986
RseI CAYNNNNRTG 2 cut(s) 240, 373
SaqAI TTAA 8 cut(s) 107, 213, 267, 276, 297, 482, 717, 951
Sau3AI GATC 3 cut(s) 121, 232, 695
Sau96I GGNCC 2 cut(s) 64, 657
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 4 cut(s) 68, 463, 712, 749
SduI GDGCHC 1 cut(s) 247
SexAI ACCWGGT 1 cut(s) 710
SfaNI GCATC 3 cut(s) 44, 170, 851
SfcI CTRYAG 2 cut(s) 517, 855
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 240, 373
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SnaBI TACGTA 1 cut(s) 457
SpeI ACTAGT 2 cut(s) 281, 623
Sse9I AATT 8 cut(s) 214, 483, 690, 699, 781, 871, 912, 919
SspI AATATT 1 cut(s) 994
SspMI CTAG 6 cut(s) 78, 176, 282, 434, 624, 681
StyD4I CCNGG 4 cut(s) 66, 461, 710, 747
TaaI ACNGT 3 cut(s) 74, 409, 518
TaiI ACGT 2 cut(s) 455, 459
TaqI TCGA 2 cut(s) 353, 477
TasI AATT 8 cut(s) 214, 483, 690, 699, 781, 871, 912, 919
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 2 cut(s) 27, 647
Tru1I TTAA 8 cut(s) 107, 213, 267, 276, 297, 482, 717, 951
Tru9I TTAA 8 cut(s) 107, 213, 267, 276, 297, 482, 717, 951
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 4 cut(s) 813, 978, 1008, 1035
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 2 cut(s) 781, 919
XspI CTAG 6 cut(s) 78, 176, 282, 434, 624, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.