Prupe.6G302800_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
27451356 .. 27453161
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G302800.1

Sequence Viewer

Length: 1806 bp
ATGTTCCATGCCAAGCTACCATCACAGCCTTTACCAAACGACGTTTTCCAAGCATCAAAAGCCAAAGCCATCCTTGCCCTCTTGCAAGGATGCAACAGCCTCATAAGGCTTAAAAAAATCCATGCCTACGTCATCACCAACGGTCTTCAACACCAAACCGCCATTTCAAACAAACTGCTCAACTTCTGTGCTGTTTCAGTCTCGGGCTGCTTAGCCTACGCTCAGCTTCTCTTCCATCATCACATACAAAACCCACAAACCCAAGACTGGAATTCCATGATCAGAGGCTTTTCCCAAAGCCCATCTCCTCTTCAAGCCATTTTTTACTACAATCACATGCTTTCCTCTGCTTCTGATTCTTGTCCTGACACCTTCACTTTCTCGTTTGTGCTCAAGGCTTGCGAGAAAGTTAAGGCCCAGACCAAGTGCAAAGAGGTTCATGGAGCCGTGGTTCGCTACGGTTATGAGAACGACGTTGTTGTTTGCACCAATCTTATAAGATCATATTCTTGTAATGGTTCGATTGATACCGCACAGAGGGTTTTCGACAATATGCTTGAAAGAGACTTAGTTTCTTGGAACTCTATGATTTCATGTTACTCTCAAAGGGGTTTTCACCACGAGGCCTTGAGTACGTATAATCTTATGAGAAAAGAAAATGTGGGTCTTGATGGTTTTACTCTTGTTGGCTTGCTATCTTCTTGTGCTCACTTGGGTGCGTTGAATACCGGAGTTACAGTGCATAGAATAGCTCGTGAAAAGGGGCTTCTGGGAAATGTTTATGTTGGGAATGCGCTTATAGATATGTATGCCAAATGTGGCAACTTGGATAGTGCTCTTAGTGTCTTTGAGAGGATGCAGAATCGTGATGTTTTTACATGGAACTCCATGATTGTTGGGTATGGAGTACATGGTCGTGGGGACGAATCAATCTCTTTTTTTGGGCAGATGCTGATGGCAGGAGTGCGGCCAAATTCCATCACATTTCTTGGTTTGTTATGTGGATGCAGTCACCAAGGCTTGGTAGAGAAGGGTGTTGAGTACTTCAATGTGATGAGCTTCAAGTTCAATATTAAACCTGGAATTAAGCATTATGGGTGCCTGGTGGATCTTTTTGGCAGAGCTGGGATGCTCAAAAAGGCGCTGCAAGTTATTAGGACTTCGCGTGCTCAGGACGATCCAGTCCTATGGCGGACTCTGCTTGGCTCTTGCAAGATTCATAAAAATGTAGAAATAGGAGAAATTGCTATGAGGAATCTAATCCAGCTAGGGTCATCAAATGCAGGGGACTACGTACTTCTTGCTACGATTTATTTTAGAGAAAAAGATGCAGATGGTGTTGCAAGGATGAGAAAATTGATTAAAACCCAGGGAGTGAAAACCACTCCTGGTTGGAGCTGGATTGAAATTGGTGATCAGGTTCACAAGTTTGTTGTGGATGACAAGTCACATCCAGATGCTAATGAAATTTATCAAAAGTTGAGGGTTGTTGTTCATCAAGCTGCTCTGCATGGTTATGTGCAAGAGGGATCTCTTATCACAGTGTCTGAATTTAACTCCACAGACACAGATTGCTTGGAAACTTCCGGTTCATGTCACGGTGAGAAGCTGGCAATTGCTTTTGGCCTGGCAAGAACTCCAGAAGGAACATGTTTACGAATAGTAAAGAACCTCAGAGTTTGTAGAGATTGCCATTCATTCACAAAATTCGTTTCCCAAGCATTCAATAGAGAAATAGTTGTCAGGGATCGAGTTCGGTTTCATCACTTCAAAGGTGGATTATGTTCATGTAAAGATTATTGGTGA

Protein Analysis

602

Amino Acids

67.08

Weight (kDa)

8.92

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56550 AT3G56550
fragaria_vesca FvH4_6g08690
malus_domestica MD04G1184300.v1.1 MD12G1197500.v1.1
prunus_persica Prupe.6G302800_v2.0.a1
pyrus_communis pycom04g16330 pycom12g18380
rosa_chinensis RchiOBHm_Chr3g0458831
rosa_laevigata RLG00000025132
rosa_multiflora Rmu_co8385739.1_g000001
rosa_roxburghii Rroxscaffold_6G00420760
rosa_rugosa Rorug03G0032200
rosa_samantha Rh3BG092700 Rh3CG093000 Rh3DG093700
rosa_wichuraiana Rw3G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AasI GACNNNNNNGTC 1 cut(s) 1181
AccB1I GGYRCC 1 cut(s) 1098
AccB7I CCANNNNNTGG 1 cut(s) 1021
AccII CGCG 1 cut(s) 1165
AciI CCGC 4 cut(s) 159, 531, 967, 1192
AclWI GGATC 4 cut(s) 1116, 1172, 1537, 1755
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 5 cut(s) 271, 973, 1467, 1550, 1706
AfaI GTAC 4 cut(s) 634, 909, 1043, 1296
AfiI CCNNNNNNNGG 3 cut(s) 267, 537, 1021
AflIII ACRYGT 1 cut(s) 1649
AjnI CCWGG 5 cut(s) 1078, 1101, 1368, 1387, 1626
AleI CACNNNNGTG 1 cut(s) 714
AloI GAACNNNNNNTCC 2 cut(s) 435, 467
AluBI AGCT 9 cut(s) 16, 226, 752, 1059, 1124, 1267, 1398, 1502, 1609
AluI AGCT 9 cut(s) 16, 226, 752, 1059, 1124, 1267, 1398, 1502, 1609
Alw21I GWGCWC 4 cut(s) 393, 709, 838, 1171
Alw26I GTCTC 2 cut(s) 205, 558
AlwI GGATC 4 cut(s) 1116, 1172, 1537, 1755
AlwNI CAGNNNCTG 2 cut(s) 952, 1547
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 4 cut(s) 414, 624, 968, 1624
ApeKI GCWGC 3 cut(s) 207, 1144, 1502
ApoI RAATTY 5 cut(s) 271, 973, 1467, 1550, 1706
AspLEI GCGC 2 cut(s) 796, 1144
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 5 cut(s) 127, 608, 1004, 1424, 1613
AvaI CYCGRG 1 cut(s) 202
BanI GGYRCC 1 cut(s) 1098
BauI CACGAG 2 cut(s) 620, 753
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 4 cut(s) 393, 709, 838, 1171
BbvI GCAGC 3 cut(s) 194, 1131, 1489
BccI CCATC 8 cut(s) 28, 77, 243, 310, 665, 949, 986, 1328
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
BclI TGATCA 2 cut(s) 279, 1414
BcoDI GTCTC 2 cut(s) 205, 558
BfaI CTAG 1 cut(s) 1268
BfoI RGCGCY 1 cut(s) 1145
BisI GCNGC 4 cut(s) 208, 968, 1145, 1503
BlpI GCTNAGC 2 cut(s) 211, 222
BlsI GCNGC 4 cut(s) 209, 969, 1146, 1504
BmcAI AGTACT 1 cut(s) 1043
Bme1390I CCNGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 445, 1100
BmrFI CCNGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
BmsI GCATC 8 cut(s) 62, 80, 846, 939, 995, 1119, 1318, 1447
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 1623
Bpu10I CCTNAGC 1 cut(s) 1170
Bpu1102I GCTNAGC 2 cut(s) 211, 222
BpuEI CTTGAG 2 cut(s) 377, 649
BsaAI YACGTR 2 cut(s) 636, 1294
BsaJI CCNNGG 4 cut(s) 447, 1015, 1368, 1369
BsaWI WCCGGW 2 cut(s) 728, 1586
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 723, 753
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 537, 1021
Bse1I ACTGG 2 cut(s) 272, 1181
BseBI CCWGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
BseDI CCNNGG 4 cut(s) 447, 1015, 1368, 1369
BseGI GGATG 8 cut(s) 69, 95, 861, 1010, 1134, 1353, 1444, 1450
BseLI CCNNNNNNNGG 3 cut(s) 267, 537, 1021
BseMII CTCAG 3 cut(s) 236, 1184, 1687
BseNI ACTGG 2 cut(s) 272, 1181
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 3 cut(s) 194, 1131, 1489
BseYI CCCAGC 1 cut(s) 1124
Bsh1236I CGCG 1 cut(s) 1165
BshFI GGCC 4 cut(s) 416, 626, 970, 1626
BshNI GGYRCC 1 cut(s) 1098
BsiHKAI GWGCWC 4 cut(s) 393, 709, 838, 1171
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 729, 1587
BslFI GGGAC 2 cut(s) 935, 1301
BslI CCNNNNNNNGG 3 cut(s) 267, 537, 1021
BsmAI GTCTC 2 cut(s) 205, 558
BsmFI GGGAC 2 cut(s) 935, 1301
BsmI GAATGC 2 cut(s) 796, 1721
BsnI GGCC 4 cut(s) 416, 626, 970, 1626
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 4 cut(s) 393, 709, 838, 1171
Bsp143I GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
Bsp1720I GCTNAGC 2 cut(s) 211, 222
BspACI CCGC 4 cut(s) 159, 531, 967, 1192
BspANI GGCC 4 cut(s) 416, 626, 970, 1626
BspCNI CTCAG 3 cut(s) 235, 1183, 1686
BspFNI CGCG 1 cut(s) 1165
BspLI GGNNCC 2 cut(s) 445, 1100
BspPI GGATC 4 cut(s) 1116, 1172, 1537, 1755
BspT107I GGYRCC 1 cut(s) 1098
BsrI ACTGG 2 cut(s) 272, 1181
BssECI CCNNGG 4 cut(s) 447, 1015, 1368, 1369
BssMI GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
BssSI CACGAG 2 cut(s) 620, 753
BssT1I CCWWGG 1 cut(s) 1015
Bst2BI CACGAG 2 cut(s) 620, 753
Bst2UI CCWGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
Bst4CI ACNGT 5 cut(s) 143, 461, 739, 1543, 1601
Bst6I CTCTTC 2 cut(s) 236, 315
BstBAI YACGTR 2 cut(s) 636, 1294
BstC8I GCNNGC 4 cut(s) 400, 692, 1167, 1611
BstDEI CTNAG 6 cut(s) 211, 222, 568, 839, 1170, 1673
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 8 cut(s) 69, 95, 861, 1010, 1134, 1353, 1444, 1450
BstFNI CGCG 1 cut(s) 1165
BstH2I RGCGCY 1 cut(s) 1145
BstHHI GCGC 2 cut(s) 796, 1144
BstKTI GATC 7 cut(s) 282, 503, 1111, 1180, 1417, 1532, 1750
BstMAI GTCTC 2 cut(s) 205, 558
BstMBI GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
BstMWI GCNNNNNNNGC 3 cut(s) 59, 74, 1198
BstNI CCWGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
BstNSI RCATGY 2 cut(s) 340, 1653
BstSCI CCNGG 5 cut(s) 1078, 1101, 1368, 1387, 1626
BstSNI TACGTA 2 cut(s) 636, 1294
BstUI CGCG 1 cut(s) 1165
BstV1I GCAGC 3 cut(s) 194, 1131, 1489
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 1108, 1529
BstXI CCANNNNNNTGG 1 cut(s) 1188
BstYI RGATCY 2 cut(s) 1108, 1529
BsuRI GGCC 4 cut(s) 416, 626, 970, 1626
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 8 cut(s) 69, 95, 861, 1010, 1134, 1353, 1444, 1450
BtsIMutI CAGTG 2 cut(s) 744, 1548
Cac8I GCNNGC 4 cut(s) 400, 692, 1167, 1611
CaiI CAGNNNCTG 2 cut(s) 952, 1547
CfoI GCGC 2 cut(s) 796, 1144
Cfr13I GGNCC 1 cut(s) 415
Csp6I GTAC 4 cut(s) 633, 908, 1042, 1295
CviQI GTAC 4 cut(s) 633, 908, 1042, 1295
DdeI CTNAG 6 cut(s) 211, 222, 568, 839, 1170, 1673
DpnI GATC 7 cut(s) 281, 502, 1110, 1179, 1416, 1531, 1749
DpnII GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
DrdI GACNNNNNNGTC 1 cut(s) 1181
DseDI GACNNNNNNGTC 1 cut(s) 1181
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 2 cut(s) 236, 315
EarI CTCTTC 2 cut(s) 236, 315
EciI GGCGGA 1 cut(s) 1207
Eco105I TACGTA 2 cut(s) 636, 1294
Eco130I CCWWGG 1 cut(s) 1015
Eco147I AGGCCT 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 271
EcoRII CCWGG 5 cut(s) 1078, 1101, 1368, 1387, 1626
EcoT14I CCWWGG 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 1015
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 2 cut(s) 935, 1301
FbaI TGATCA 2 cut(s) 279, 1414
Fnu4HI GCNGC 4 cut(s) 208, 968, 1145, 1503
FokI GGATG 8 cut(s) 56, 102, 868, 1017, 1141, 1360, 1437, 1451
Fsp4HI GCNGC 4 cut(s) 208, 968, 1145, 1503
FspBI CTAG 1 cut(s) 1268
GlaI GCGC 2 cut(s) 795, 1143
GluI GCNGC 4 cut(s) 208, 968, 1145, 1503
GsaI CCCAGC 1 cut(s) 1128
GsuI CTGGAG 1 cut(s) 1623
HaeII RGCGCY 1 cut(s) 1145
HaeIII GGCC 4 cut(s) 416, 626, 970, 1626
HapII CCGG 2 cut(s) 729, 1587
HhaI GCGC 2 cut(s) 796, 1144
Hin6I GCGC 2 cut(s) 794, 1142
HinP1I GCGC 2 cut(s) 794, 1142
HinfI GANTC 6 cut(s) 356, 862, 926, 1195, 1216, 1255
HpaII CCGG 2 cut(s) 729, 1587
HphI GGTGA 5 cut(s) 127, 608, 1004, 1424, 1613
Hpy166II GTNNAC 2 cut(s) 1423, 1655
Hpy188I TCNGA 4 cut(s) 284, 355, 1549, 1676
Hpy188III TCNNGA 7 cut(s) 365, 668, 755, 866, 1172, 1454, 1640
Hpy8I GTNNAC 2 cut(s) 1423, 1655
Hpy99I CGWCG 2 cut(s) 44, 476
HpyAV CCTTC 3 cut(s) 382, 1024, 1637
HpyCH4III ACNGT 5 cut(s) 143, 461, 739, 1543, 1601
HpyCH4IV ACGT 5 cut(s) 42, 129, 474, 635, 1293
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 74, 1198
HpyF3I CTNAG 6 cut(s) 211, 222, 568, 839, 1170, 1673
HpySE526I ACGT 5 cut(s) 42, 129, 474, 635, 1293
HspAI GCGC 2 cut(s) 794, 1142
Ksp22I TGATCA 2 cut(s) 279, 1414
Kzo9I GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
LmnI GCTCC 2 cut(s) 443, 1395
Lsp1109I GCAGC 3 cut(s) 194, 1131, 1489
LweI GCATC 8 cut(s) 62, 80, 846, 939, 995, 1119, 1318, 1447
MaeI CTAG 1 cut(s) 1268
MaeII ACGT 5 cut(s) 42, 129, 474, 635, 1293
MaeIII GTNAC 5 cut(s) 596, 733, 1010, 1446, 1595
MalI GATC 7 cut(s) 281, 502, 1110, 1179, 1416, 1531, 1749
MboI GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
MboII GAAGA 4 cut(s) 137, 223, 302, 690
MfeI CAATTG 1 cut(s) 1614
MflI RGATCY 2 cut(s) 1108, 1529
MhlI GDGCHC 4 cut(s) 393, 709, 838, 1171
MlyI GAGTC 1 cut(s) 1189
MmeI TCCRAC 1 cut(s) 1373
MseI TTAA 6 cut(s) 111, 411, 1074, 1086, 1362, 1554
MslI CAYNNNNRTG 5 cut(s) 714, 915, 1224, 1455, 1515
MspI CCGG 2 cut(s) 729, 1587
MspR9I CCNGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
MunI CAATTG 1 cut(s) 1614
Mva1269I GAATGC 2 cut(s) 796, 1721
MvaI CCWGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
MvnI CGCG 1 cut(s) 1165
MwoI GCNNNNNNNGC 3 cut(s) 59, 74, 1198
NdeII GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
NlaIV GGNNCC 2 cut(s) 445, 1100
NmuCI GTSAC 3 cut(s) 1010, 1446, 1595
NspI RCATGY 2 cut(s) 340, 1653
OliI CACNNNNGTG 1 cut(s) 714
PasI CCCWGGG 1 cut(s) 1369
PceI AGGCCT 1 cut(s) 626
PciI ACATGT 1 cut(s) 1649
PctI GAATGC 2 cut(s) 796, 1721
PfeI GAWTC 5 cut(s) 356, 862, 926, 1216, 1255
PflMI CCANNNNNTGG 1 cut(s) 1021
PkrI GCNGC 4 cut(s) 209, 969, 1146, 1504
PleI GAGTC 1 cut(s) 1189
PpsI GAGTC 1 cut(s) 1189
Ppu21I YACGTR 2 cut(s) 636, 1294
PscI ACATGT 1 cut(s) 1649
PsiI TTATAA 1 cut(s) 497
Psp6I CCWGG 5 cut(s) 1078, 1101, 1368, 1387, 1626
PspFI CCCAGC 1 cut(s) 1124
PspGI CCWGG 5 cut(s) 1078, 1101, 1368, 1387, 1626
PspN4I GGNNCC 2 cut(s) 445, 1100
PspPI GGNCC 1 cut(s) 415
PstNI CAGNNNCTG 2 cut(s) 952, 1547
PsuI RGATCY 2 cut(s) 1108, 1529
RsaI GTAC 4 cut(s) 634, 909, 1043, 1296
RsaNI GTAC 4 cut(s) 633, 908, 1042, 1295
RseI CAYNNNNRTG 5 cut(s) 714, 915, 1224, 1455, 1515
SaqAI TTAA 6 cut(s) 111, 411, 1074, 1086, 1362, 1554
SatI GCNGC 4 cut(s) 208, 968, 1145, 1503
Sau3AI GATC 7 cut(s) 279, 500, 1108, 1177, 1414, 1529, 1747
Sau96I GGNCC 1 cut(s) 415
ScaI AGTACT 1 cut(s) 1043
SchI GAGTC 1 cut(s) 1189
ScrFI CCNGG 5 cut(s) 1080, 1103, 1370, 1389, 1628
SduI GDGCHC 4 cut(s) 393, 709, 838, 1171
SfaNI GCATC 8 cut(s) 62, 80, 846, 939, 995, 1119, 1318, 1447
SmiMI CAYNNNNRTG 5 cut(s) 714, 915, 1224, 1455, 1515
SmlI CTYRAG 2 cut(s) 392, 628
SmoI CTYRAG 2 cut(s) 392, 628
SnaBI TACGTA 2 cut(s) 636, 1294
SseBI AGGCCT 1 cut(s) 626
SsiI CCGC 4 cut(s) 159, 531, 967, 1192
SspI AATATT 1 cut(s) 1072
SspMI CTAG 1 cut(s) 1268
StuI AGGCCT 1 cut(s) 626
StyD4I CCNGG 5 cut(s) 1078, 1101, 1368, 1387, 1626
StyI CCWWGG 1 cut(s) 1015
TaaI ACNGT 5 cut(s) 143, 461, 739, 1543, 1601
TaiI ACGT 5 cut(s) 45, 132, 477, 638, 1296
TaqI TCGA 3 cut(s) 521, 546, 1750
TatI WGTACW 2 cut(s) 907, 1041
TauI GCSGC 1 cut(s) 970
TfiI GAWTC 5 cut(s) 356, 862, 926, 1216, 1255
Tru1I TTAA 6 cut(s) 111, 411, 1074, 1086, 1362, 1554
Tru9I TTAA 6 cut(s) 111, 411, 1074, 1086, 1362, 1554
TscAI CASTG 2 cut(s) 744, 1548
TseFI GTSAC 3 cut(s) 1010, 1446, 1595
TseI GCWGC 3 cut(s) 207, 1144, 1502
Tsp45I GTSAC 3 cut(s) 1010, 1446, 1595
TspDTI ATGAA 9 cut(s) 428, 582, 1208, 1479, 1484, 1581, 1686, 1751, 1776
TspRI CASTG 2 cut(s) 744, 1548
Van91I CCANNNNNTGG 1 cut(s) 1021
XapI RAATTY 5 cut(s) 271, 973, 1467, 1550, 1706
XceI RCATGY 2 cut(s) 340, 1653
XspI CTAG 1 cut(s) 1268
ZrmI AGTACT 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.