Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385739.1

Orthogroup ID

OG0014411

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1116

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385739.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1115 bp

atgatcagaggcttctcccaaagcccatctcctcttcaagccatttcttactacaaccacatgctttcgtcctcctccgcttccgattccccacccgacacgtttagcttctcgtttgtgctcaaggcttgcgagagagtcagggcagagagcaagtgccgagaggttcatggagttgtggttcgccatggttatgatatggacgttgttgtttgcaccaatttgatgaagtcttatgctggcagtgggtcagttgataatgcacggagagtgttcgacgaaatgtctgagagagacttggtgtgttggaattccatgatctcgtgctactctcaagcgggtcttcaccatgaggcgttgaatatatttagtcttatgagaaatcaaaatgtgggtcttgatgggttcactcttgttgggttgctttcgtcttgtgctcacttgggtgcgttgaacaccggagtcacaatgcatgaacttgctcgtcagaaggggtttttgggaagtgtttatgttggcaatgcgcttatagatatgtacgcaaaatgtggtgacttggatggtgctctttgtgtctttgagagaatgagaaagcgggatgcttttacgtggaactccatgattgttgggtatggagtacatggtcgcggggacgaagcaatctatttttttgagaagatgatgatggcaggtgtgcagccgaattccatcacatttctcggtttgttatgtgggtgtagtcaccaaggattagtagagaagggtgttgattacttccatatgatgagctccaagttcaatatcaaacctggaattaagcactatgggtgtctggtggatctgtttggtcgagctgggaagctcgagaaggcgcttcatgttattaggacatcacatgcacaggatgatccagttctatggcggactctgctcagctcttgcaagattcataaaaacgtggaaataggagaagttgccttgaagaatctaatccgtttagggtcatcaaatgcaggggactacgtacttcttgccactatttattttagggcgaaagatgcagatggtgtttcaaggatgagaaaattgattaaaaaccagggagtgaggaccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

372

Amino Acids

41.16

Weight (kDa)

8.75

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56550 AT3G56550
fragaria_vesca	FvH4_6g08690
malus_domestica	MD04G1184300.v1.1 MD12G1197500.v1.1
prunus_persica	Prupe.6G302800_v2.0.a1
pyrus_communis	pycom04g16330 pycom12g18380
rosa_chinensis	RchiOBHm_Chr3g0458831
rosa_laevigata	RLG00000025132
rosa_multiflora	Rmu_co8385739.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420760
rosa_rugosa	Rorug03G0032200
rosa_samantha	Rh3BG092700 Rh3CG093000 Rh3DG093700
rosa_wichuraiana	Rw3G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	680
AccII	CGCG	1 cut(s)	648
AciI	CCGC	5 cut(s)	78, 338, 595, 648, 922
AclWI	GGATC	2 cut(s)	846, 902
AcsI	RAATTY	2 cut(s)	310, 703
AfaI	GTAC	3 cut(s)	539, 639, 1026
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	6 cut(s)	38, 361, 454, 799, 982, 1074
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	808, 1098
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AleI	CACNNNNGTG	1 cut(s)	444
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	5 cut(s)	108, 789, 854, 862, 936
AluI	AGCT	5 cut(s)	108, 789, 854, 862, 936
Alw21I	GWGCWC	4 cut(s)	123, 439, 568, 791
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	846, 902
Ama87I	CYCGRG	1 cut(s)	863
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	2 cut(s)	310, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AspLEI	GCGC	2 cut(s)	526, 874
AspS9I	GGNCC	1 cut(s)	1110
AsuHPI	GGTGA	3 cut(s)	338, 563, 734
AvaI	CYCGRG	1 cut(s)	863
AvaII	GGWCC	1 cut(s)	1110
BanII	GRGCYC	1 cut(s)	791
BauI	CACGAG	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	4 cut(s)	123, 439, 568, 791
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	6 cut(s)	34, 395, 554, 679, 716, 1058
BciT130I	CCWGG	2 cut(s)	810, 1100
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	875
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	1 cut(s)	698
BlpI	GCTNAGC	1 cut(s)	932
BlsI	GCNGC	1 cut(s)	699
Bme1390I	CCNGG	2 cut(s)	810, 1100
Bme18I	GGWCC	1 cut(s)	1110
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	1110
BmrFI	CCNGG	2 cut(s)	810, 1100
BmsI	GCATC	2 cut(s)	589, 1048
BpiI	GAAGAC	1 cut(s)	335
Bpu1102I	GCTNAGC	1 cut(s)	932
BpuEI	CTTGAG	2 cut(s)	107, 318
BsaAI	YACGTR	2 cut(s)	609, 1024
BsaJI	CCNNGG	3 cut(s)	187, 745, 1099
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse1I	ACTGG	1 cut(s)	911
Bse3DI	GCAATG	1 cut(s)	526
BseBI	CCWGG	2 cut(s)	810, 1100
BseDI	CCNNGG	3 cut(s)	187, 745, 1099
BseGI	GGATG	4 cut(s)	565, 604, 910, 1083
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	279, 946
BseNI	ACTGG	1 cut(s)	911
BseRI	GAGGAG	2 cut(s)	21, 64
BseXI	GCAGC	1 cut(s)	709
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	716
Bsh1236I	CGCG	1 cut(s)	648
BsiHKAI	GWGCWC	4 cut(s)	123, 439, 568, 791
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	2 cut(s)	665, 1031
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	2 cut(s)	665, 1031
BsoBI	CYCGRG	1 cut(s)	863
Bsp1286I	GDGCHC	4 cut(s)	123, 439, 568, 791
Bsp143I	GATC	4 cut(s)	3, 318, 838, 907
Bsp1720I	GCTNAGC	1 cut(s)	932
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	5 cut(s)	78, 338, 595, 648, 922
BspCNI	CTCAG	2 cut(s)	280, 945
BspFNI	CGCG	1 cut(s)	648
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	2 cut(s)	846, 902
BsrDI	GCAATG	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	911
BssECI	CCNNGG	3 cut(s)	187, 745, 1099
BssMI	GATC	4 cut(s)	3, 318, 838, 907
BssSI	CACGAG	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	187, 745
Bst2BI	CACGAG	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	810, 1100
Bst6I	CTCTTC	1 cut(s)	39
BstBAI	YACGTR	2 cut(s)	609, 1024
BstC8I	GCNNGC	2 cut(s)	130, 241
BstDEI	CTNAG	2 cut(s)	288, 932
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	4 cut(s)	565, 604, 910, 1083
BstFNI	CGCG	1 cut(s)	648
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	2 cut(s)	526, 874
BstKTI	GATC	4 cut(s)	6, 321, 841, 910
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	3, 318, 838, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	928, 1058
BstNI	CCWGG	2 cut(s)	810, 1100
BstNSI	RCATGY	2 cut(s)	64, 899
BstSCI	CCNGG	2 cut(s)	808, 1098
BstSNI	TACGTA	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	838
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	838
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	565, 604, 910, 1083
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	130, 241
CfoI	GCGC	2 cut(s)	526, 874
Cfr13I	GGNCC	1 cut(s)	1110
Csp6I	GTAC	3 cut(s)	538, 638, 1025
CviQI	GTAC	3 cut(s)	538, 638, 1025
DdeI	CTNAG	2 cut(s)	288, 932
DpnI	GATC	4 cut(s)	5, 320, 840, 909
DpnII	GATC	4 cut(s)	3, 318, 838, 907
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	39
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	937
Ecl136II	GAGCTC	1 cut(s)	789
Eco105I	TACGTA	1 cut(s)	1024
Eco130I	CCWWGG	2 cut(s)	187, 745
Eco24I	GRGCYC	1 cut(s)	791
Eco47I	GGWCC	1 cut(s)	1110
Eco53kI	GAGCTC	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	789
EcoRI	GAATTC	2 cut(s)	310, 703
EcoRII	CCWGG	2 cut(s)	808, 1098
EcoT14I	CCWWGG	2 cut(s)	187, 745
EcoT22I	ATGCAT	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	2 cut(s)	187, 745
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	2 cut(s)	665, 1031
FauI	CCCGC	3 cut(s)	331, 588, 641
FauNDI	CATATG	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	698
FokI	GGATG	4 cut(s)	572, 611, 917, 1090
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	1 cut(s)	698
GlaI	GCGC	2 cut(s)	525, 873
GluI	GCNGC	1 cut(s)	698
GsaI	CCCAGC	1 cut(s)	858
HaeII	RGCGCY	1 cut(s)	875
HapII	CCGG	1 cut(s)	459
HhaI	GCGC	2 cut(s)	526, 874
Hin6I	GCGC	2 cut(s)	524, 872
HinP1I	GCGC	2 cut(s)	524, 872
HinfI	GANTC	6 cut(s)	86, 138, 462, 925, 946, 985
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	3 cut(s)	338, 563, 734
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	4 cut(s)	8, 85, 289, 489
Hpy188III	TCNNGA	2 cut(s)	398, 865
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	484, 754, 862
HpyCH4IV	ACGT	5 cut(s)	101, 204, 608, 957, 1023
HpyCH4V	TGCA	8 cut(s)	216, 263, 472, 697, 899, 942, 1013, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	928, 1058
HpyF3I	CTNAG	2 cut(s)	288, 932
HpySE526I	ACGT	5 cut(s)	101, 204, 608, 957, 1023
HspAI	GCGC	2 cut(s)	524, 872
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 318, 838, 907
LmnI	GCTCC	1 cut(s)	794
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	2 cut(s)	589, 1048
MaeII	ACGT	5 cut(s)	101, 204, 608, 957, 1023
MaeIII	GTNAC	3 cut(s)	463, 551, 740
MalI	GATC	4 cut(s)	5, 320, 840, 909
MboI	GATC	4 cut(s)	3, 318, 838, 907
MboII	GAAGA	4 cut(s)	26, 335, 688, 994
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	4 cut(s)	123, 439, 568, 791
MluCI	AATT	5 cut(s)	220, 310, 703, 813, 1085
MlyI	GAGTC	3 cut(s)	147, 471, 919
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	6 cut(s)	42, 82, 85, 157, 346, 1101
Mph1103I	ATGCAT	1 cut(s)	474
MseI	TTAA	2 cut(s)	816, 1092
MslI	CAYNNNNRTG	2 cut(s)	192, 444
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	2 cut(s)	810, 1100
MvaI	CCWGG	2 cut(s)	810, 1100
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	2 cut(s)	928, 1058
NcoI	CCATGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	780
NdeII	GATC	4 cut(s)	3, 318, 838, 907
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	3 cut(s)	463, 551, 740
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	2 cut(s)	64, 899
OliI	CACNNNNGTG	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	863
PaqCI	CACCTGC	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	86, 946, 985
PkrI	GCNGC	1 cut(s)	699
PleI	GAGTC	3 cut(s)	146, 470, 919
PpsI	GAGTC	3 cut(s)	146, 470, 919
Ppu21I	YACGTR	2 cut(s)	609, 1024
Psp124BI	GAGCTC	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	808, 1098
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	2 cut(s)	808, 1098
PspPI	GGNCC	1 cut(s)	1110
PsuI	RGATCY	1 cut(s)	838
RsaI	GTAC	3 cut(s)	539, 639, 1026
RsaNI	GTAC	3 cut(s)	538, 638, 1025
RseI	CAYNNNNRTG	2 cut(s)	192, 444
SacI	GAGCTC	1 cut(s)	791
SaqAI	TTAA	2 cut(s)	816, 1092
SatI	GCNGC	1 cut(s)	698
Sau3AI	GATC	4 cut(s)	3, 318, 838, 907
Sau96I	GGNCC	1 cut(s)	1110
SchI	GAGTC	3 cut(s)	147, 471, 919
ScrFI	CCNGG	2 cut(s)	810, 1100
SduI	GDGCHC	4 cut(s)	123, 439, 568, 791
SfaNI	GCATC	2 cut(s)	589, 1048
Sfr274I	CTCGAG	1 cut(s)	863
SinI	GGWCC	1 cut(s)	1110
SlaI	CTCGAG	1 cut(s)	863
SmiMI	CAYNNNNRTG	2 cut(s)	192, 444
SmlI	CTYRAG	3 cut(s)	122, 333, 863
SmoI	CTYRAG	3 cut(s)	122, 333, 863
SnaBI	TACGTA	1 cut(s)	1024
Sse9I	AATT	5 cut(s)	220, 310, 703, 813, 1085
SsiI	CCGC	5 cut(s)	78, 338, 595, 648, 922
SstI	GAGCTC	1 cut(s)	791
StyD4I	CCNGG	2 cut(s)	808, 1098
StyI	CCWWGG	2 cut(s)	187, 745
TaiI	ACGT	5 cut(s)	104, 207, 611, 960, 1026
TaqI	TCGA	3 cut(s)	276, 850, 864
TasI	AATT	5 cut(s)	220, 310, 703, 813, 1085
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	3 cut(s)	86, 946, 985
Tru1I	TTAA	2 cut(s)	816, 1092
Tru9I	TTAA	2 cut(s)	816, 1092
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	3 cut(s)	463, 551, 740
TseI	GCWGC	1 cut(s)	697
Tsp45I	GTSAC	3 cut(s)	463, 551, 740
TspDTI	ATGAA	5 cut(s)	158, 242, 489, 866, 938
TspGWI	ACGGA	2 cut(s)	280, 983
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	1110
XapI	RAATTY	2 cut(s)	310, 703
XceI	RCATGY	2 cut(s)	64, 899
XhoI	CTCGAG	1 cut(s)	863
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.