Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012763

Physical Location & Seq

Genomic Coordinates Forward (+)

27691909 .. 27694365

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G307200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATATCACAAACACTCATAACAACACCACCTAAATTCCAACAGATATCTTCCTTAGAATTCAAATTTCATCATCCAAACGCAACAAATGCACGCAACTCAAAAGCCTGTGTTACAAACATCACAGTGAGTGACTCAACCATCAAGAATTCAGACAACGGCGTTCGGATCAAAACTTGGCAAGGCGGCTCCGGCAGTGTATCTGAAGTAACCTTCAAGGACATCCACATGGACATAGTTCTAAATCCTATTATCATAGACCAGTTTTACTGCCTCAGCAAAAAATGCCCTAACCAAACTTCAGCACTAATGATAAATAGTGTTCGCTTCTCAAACATTAAGGGCACATATGACAGTCGAAAGCCTCCTATGCATCTTGCTTGCAGCGACTCAATGCCATGCAAAAATCTCACCCTTTTGGGCACAGACTTGGTTCCTGCTCAGGGAGGGGCTTATTTGGATCCATTCTGCTGGAAAGCTTTTGGCCCTAAGGACACATTTTCCACTCGACAAGTCCCATGCTTGATGAAGGGTTACCCCAAAATGTTGCAACATGATTTTGACAGATCATGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

193

Amino Acids

21.41

Weight (kDa)

9.03

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02460
fragaria_vesca	FvH4_1g26650
malus_domestica	MD09G1287300.v1.1 MD17G1279500.v1.1
prunus_persica	Prupe.3G005900_v2.0.a1 Prupe.6G307200_v2.0.a1
pyrus_communis	pycom09g19460 pycom17g27760
rosa_chinensis	RchiOBHm_Chr3g0486841
rosa_laevigata	RLG00000023055
rosa_multiflora	Rmu_sc0005709.1_g000005
rosa_roxburghii	Rroxscaffold_6G00395520
rosa_rugosa	Rorug03G0227400.1
rosa_samantha	Rh3AG277500 Rh3BG312600 Rh3CG311500 Rh3DG308100
rosa_wichuraiana	Rw3G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	3 cut(s)	176, 455, 468
AcsI	RAATTY	4 cut(s)	35, 59, 65, 148
AcuI	CTGAAG	2 cut(s)	225, 285
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	64, 217
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
AlwI	GGATC	3 cut(s)	176, 455, 468
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	4 cut(s)	35, 59, 65, 148
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	403
AxyI	CCTNAGG	1 cut(s)	489
BaeGI	GKGCMC	2 cut(s)	347, 425
BamHI	GGATCC	1 cut(s)	460
BbvCI	CCTCAGC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	187, 385
BlsI	GCNGC	2 cut(s)	188, 386
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	3 cut(s)	190, 435, 462
BmsI	GCATC	1 cut(s)	382
Bpu10I	CCTNAGC	2 cut(s)	275, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	489
BseGI	GGATG	2 cut(s)	73, 222
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	289, 455
BseNI	ACTGG	1 cut(s)	262
BseSI	GKGCMC	2 cut(s)	347, 425
BseXI	GCAGC	1 cut(s)	396
BshFI	GGCC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	347, 425
Bsp143I	GATC	3 cut(s)	168, 460, 566
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	2 cut(s)	288, 454
BspLI	GGNNCC	3 cut(s)	190, 435, 462
BspPI	GGATC	3 cut(s)	176, 455, 468
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	168, 460, 566
Bst4CI	ACNGT	2 cut(s)	127, 356
BstAPI	GCANNNNNTGC	2 cut(s)	89, 285
BstC8I	GCNNGC	2 cut(s)	94, 382
BstDEI	CTNAG	4 cut(s)	55, 275, 441, 489
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	73, 222
BstKTI	GATC	3 cut(s)	171, 463, 569
BstMBI	GATC	3 cut(s)	168, 460, 566
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 192, 285, 370
BstPI	GGTNACC	1 cut(s)	533
BstSLI	GKGCMC	2 cut(s)	347, 425
BstV1I	GCAGC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	73, 222
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	132, 202
Cac8I	GCNNGC	2 cut(s)	94, 382
Cfr13I	GGNCC	1 cut(s)	485
CviAII	CATG	5 cut(s)	229, 399, 519, 554, 570
CviJI	RGCY	6 cut(s)	107, 189, 364, 452, 479, 486
CviKI_1	RGCY	6 cut(s)	107, 189, 364, 452, 479, 486
DdeI	CTNAG	4 cut(s)	55, 275, 441, 489
DpnI	GATC	3 cut(s)	170, 462, 568
DpnII	GATC	3 cut(s)	168, 460, 566
Eco32I	GATATC	2 cut(s)	6, 48
Eco57I	CTGAAG	2 cut(s)	225, 285
Eco81I	CCTNAGG	1 cut(s)	489
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRI	GAATTC	2 cut(s)	59, 148
EcoRV	GATATC	2 cut(s)	6, 48
EcoT22I	ATGCAT	1 cut(s)	375
FaeI	CATG	5 cut(s)	232, 402, 522, 557, 573
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	228, 398, 518, 553, 569
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	187, 385
FokI	GGATG	2 cut(s)	60, 209
Fsp4HI	GCNGC	2 cut(s)	187, 385
GluI	GCNGC	2 cut(s)	187, 385
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	5 cut(s)	232, 402, 522, 557, 573
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	2 cut(s)	134, 389
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	154, 168, 205
Hpy188III	TCNNGA	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	223, 523
HpyCH4III	ACNGT	2 cut(s)	127, 356
HpyCH4V	TGCA	5 cut(s)	92, 373, 384, 402, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 192, 285, 370
HpyF3I	CTNAG	4 cut(s)	55, 275, 441, 489
Hsp92II	CATG	5 cut(s)	232, 402, 522, 557, 573
Kzo9I	GATC	3 cut(s)	168, 460, 566
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	6 cut(s)	121, 205, 275, 428, 450, 457
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	382
MaeIII	GTNAC	4 cut(s)	112, 131, 208, 533
MalI	GATC	3 cut(s)	170, 462, 568
MboI	GATC	3 cut(s)	168, 460, 566
MboII	GAAGA	1 cut(s)	42
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	2 cut(s)	347, 425
MluCI	AATT	4 cut(s)	35, 59, 65, 148
MlyI	GAGTC	2 cut(s)	128, 383
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	284, 375, 440
Mph1103I	ATGCAT	1 cut(s)	375
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	125, 227
MspI	CCGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	89, 192, 285, 370
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	168, 460, 566
NlaIII	CATG	5 cut(s)	232, 402, 522, 557, 573
NlaIV	GGNNCC	3 cut(s)	190, 435, 462
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	188, 386
PleI	GAGTC	2 cut(s)	128, 383
PpsI	GAGTC	2 cut(s)	128, 383
PspEI	GGTNACC	1 cut(s)	533
PspN4I	GGNNCC	3 cut(s)	190, 435, 462
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	460
RseI	CAYNNNNRTG	2 cut(s)	125, 227
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	187, 385
Sau3AI	GATC	3 cut(s)	168, 460, 566
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	2 cut(s)	128, 383
SduI	GDGCHC	2 cut(s)	347, 425
SetI	ASST	3 cut(s)	34, 215, 481
SfaNI	GCATC	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	125, 227
Sse9I	AATT	4 cut(s)	35, 59, 65, 148
SsiI	CCGC	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	127, 356
TaqI	TCGA	2 cut(s)	358, 508
TasI	AATT	4 cut(s)	35, 59, 65, 148
TauI	GCSGC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	132, 202
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	59, 542
TspRI	CASTG	2 cut(s)	132, 202
XapI	RAATTY	4 cut(s)	35, 59, 65, 148
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.