Prupe.6G359800_v2.0.a1

Leucine-rich repeat receptor-like protein CLAVATA2

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
30394014 .. 30396880
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G359800.1

Sequence Viewer

Length: 1923 bp
ATGAACTTGTCTGGCCAAATTCACCCCAACTTGTGCAAACTTCCATTTCTTGAACATTTGGTTTTGTCCGGAAACAACTTTACTTGCACAATTCCGTTATGTTTTGGCACTCTACGCAGTCTCAAAACTCTACATCTTGGTTACAATAGGTTTTACGGTACTGTGCCTGATACACTTATGCGGCTTTGGCAGTTGAAAGAACTTGTTTTGAATGGTAACAAGGATTTGGGAGGTCTTATTCCTTGGTGGGTAGGTAATTTCTCAGCACAATTGGAAAAACTAGATATAGGTTTCAATTCATTTCATGGGGAAATTCCTGAAAGCTTGTTGTACTTGAAATCTTTGAAATATTTAGATCTCGGGAACAATAATTTATCTGGTACTCTAAGTGATTTTCACCAATCCTTGGTGTTTCTCAATCTTGGGTCGAATCAGTTTTCCGGTACTTTGCCTTGTTTCTCTGCTTGTGTTCAGTCTCTTAGAGTCTTGAATCTGGCTAACAATTCTGTTATGGGAGGAATGCCTACATGTATGGCTTCACTTCAAGCTTTGAAGCGTCTAAACCTTTCATTCAATCACTTGTCTTATGAATTATCTCCAAGACTTGTGTTTTCAGAGAAGCTTCTTGTGTTGGACTTGAGTAACAATGATCTGTCTGGTCACCTTCCGAGCAAGATTGCAGAGACAACTGAGAAGTCTGGGCTTGTTCTTCTTGATTTATCTCACAATCGTTTCTCCGGTGAAATCCCATTGAAGATTACAGAACTGAAAAGCTTGCAGGCCTTGTTTCTATCCAACAATCTTCTTGTTGGGGAAATTCCAGCGAGGATTGGAAATTTGACGTATCTCCAAGTGATTGATCTCTCACACAACTTGTTATCAGGTTCAATTCCATTGAACATCGTTGGTTGTTTTCAGCTGCTTGCATTGATACTCAATAACAACAATCTTTCTGGTGAAATTCAACCGGAACTTGATGCATTGGATAGCTTGAAGATACTGGACATTAGCAACAACAAGATATCTGGTGAGATCCCACTTACTTTAGCAGGCTGTAAATCTCTGGAGATTGTAGATTTCAGCTCCAACAATCTCTCTGGAACTTTGAGTGATGCAATCACCAAATGGTCGAACCTCAGGTATCTGTCCCTAGCTCAAAATGAATTTAGTGGAAATCTGCCCAGTTGGCTCTTTACTTTTCAAGTGATCAGAATGATGGATTTCTCAGGAAACAAATTTTCTGGCTTCATACCAGATGGTAACTTTAACATGAGCATAAATTTTAAGAATGGAGAGCTTGATAAAATGCAGAGAGAGCCGTTTGGTACAATGCACAATGCGGATACAAAAGTTTTTATTATTGTCACTGGTAGCACTGAATTAAGCTTCAGTTATGTACTATCTTCGGTGGTTGGAATTGATTTCTCTAACAATGTGCTAGATGGGGAGATTCCAGTGGGACTATTTGGATTACGTGGTTTGCAATACCTGAATTTGTCACACAATTTTCTTCAGGGTCGTGTTCCTGATTTAGAGAAGATGTGGAGATTAAGGGCCTTGGATATATCACACAATTCTTTGTCAGGTCATATTCCTGGAAACATTTCCAGCCTTCAAGACCTGACTCTTTTGGATTTGTCATATAATTGTTTCTCTGGATTTGTTACAAAGAAACAAGGATATTGGAGGTTTCCAGGAGCATTTGCTGGAAATCCAGATTTGTGTTTGGAGTCCTCTGATGGAGGGTGTGACCCAGCAAGCCTCCCCGTGGTGCCAGGTAATGCACTTGAAGGGGAAGAGGACGAGGGGTGGATTTCTGTTTGGGTTTTTTGTCTAAGCGCTTTCCTCAGTTTCTACTTTGGGGGTTTGGCCCTCTTTTGCTCACCTCGAGCACGAAATTACATTCTCCAGACAAAAGCTTAG

Protein Analysis

641

Amino Acids

70.56

Weight (kDa)

5.57

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016622)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65380
fragaria_vesca FvH4_6g00680
prunus_persica Prupe.6G359800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0448121
rosa_laevigata RLG00000025945 RLG00000026021
rosa_multiflora Rmu_sc0005969.1_g000028
rosa_roxburghii Rroxscaffold_6G00426250
rosa_rugosa Rorug02G0608300
rosa_samantha Rh3BG007600 Rh3CG007600 Rh3DG008100 Rh5DG014100
rosa_wichuraiana Rw3G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1771
AccB7I CCANNNNNTGG 1 cut(s) 406
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 2 cut(s) 181, 1340
AclWI GGATC 1 cut(s) 1027
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 9 cut(s) 18, 312, 816, 835, 960, 1163, 1235, 1279, 1492
AcuI CTGAAG 2 cut(s) 1372, 1496
AfaI GTAC 6 cut(s) 160, 332, 382, 445, 1327, 1398
AfeI AGCGCT 1 cut(s) 1840
AfiI CCNNNNNNNGG 2 cut(s) 406, 1768
AflIII ACRYGT 1 cut(s) 527
AjnI CCWGG 3 cut(s) 1594, 1693, 1774
Alw21I GWGCWC 1 cut(s) 1894
Alw26I GTCTC 3 cut(s) 125, 480, 677
AlwI GGATC 1 cut(s) 1027
Ama87I CYCGRG 2 cut(s) 359, 1887
Aor13HI TCCGGA 1 cut(s) 68
Aor51HI AGCGCT 1 cut(s) 1840
AoxI GGCC 4 cut(s) 13, 780, 1554, 1869
ApeKI GCWGC 1 cut(s) 919
ApoI RAATTY 9 cut(s) 18, 312, 816, 835, 960, 1163, 1235, 1279, 1492
Asp700I GAANNNNTTC 1 cut(s) 1603
AspLEI GCGC 1 cut(s) 1841
AspS9I GGNCC 2 cut(s) 1554, 1870
AsuHPI GGTGA 8 cut(s) 14, 389, 653, 752, 968, 1040, 1111, 1875
AvaI CYCGRG 2 cut(s) 359, 1887
AxyI CCTNAGG 1 cut(s) 1136
BaeI ACNNNNGTAYC 2 cut(s) 1335, 1368
BalI TGGCCA 1 cut(s) 15
BanI GGYRCC 1 cut(s) 1771
Bbv12I GWGCWC 1 cut(s) 1894
BbvI GCAGC 1 cut(s) 906
BccI CCATC 4 cut(s) 1210, 1250, 1436, 1733
BceAI ACGGC 1 cut(s) 1303
BciT130I CCWGG 3 cut(s) 1596, 1695, 1776
BciVI GTATCC 1 cut(s) 1336
BclI TGATCA 1 cut(s) 1206
BcoDI GTCTC 3 cut(s) 125, 480, 677
BfaI CTAG 3 cut(s) 281, 1151, 1439
BfoI RGCGCY 1 cut(s) 1842
BfuI GTATCC 1 cut(s) 1336
BglI GCCNNNNNGGC 1 cut(s) 1186
BglII AGATCT 1 cut(s) 355
BisI GCNGC 2 cut(s) 182, 920
BlsI GCNGC 2 cut(s) 183, 921
Bme1390I CCNGG 3 cut(s) 1596, 1695, 1776
BmeT110I CYCGRG 2 cut(s) 359, 1887
BmgT120I GGNCC 2 cut(s) 1554, 1870
BmiI GGNNCC 1 cut(s) 1773
BmrFI CCNGG 3 cut(s) 1596, 1695, 1776
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 2 cut(s) 967, 1102
BmuI ACTGGG 1 cut(s) 1176
BpmI CTGGAG 2 cut(s) 1085, 1892
BpuEI CTTGAG 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 1475
BsaJI CCNNGG 4 cut(s) 242, 405, 1557, 1767
BsaWI WCCGGW 4 cut(s) 68, 440, 737, 967
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1768
Bse1I ACTGG 4 cut(s) 1005, 1182, 1372, 1454
Bse21I CCTNAGG 1 cut(s) 1136
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 3 cut(s) 1596, 1695, 1776
BseDI CCNNGG 4 cut(s) 242, 405, 1557, 1767
BseLI CCNNNNNNNGG 2 cut(s) 406, 1768
BseMII CTCAG 5 cut(s) 276, 681, 1150, 1239, 1861
BseNI ACTGG 4 cut(s) 1005, 1182, 1372, 1454
BseXI GCAGC 1 cut(s) 906
BseYI CCCAGC 1 cut(s) 1753
BshFI GGCC 4 cut(s) 15, 782, 1556, 1871
BshNI GGYRCC 1 cut(s) 1771
BsiHKAI GWGCWC 1 cut(s) 1894
BsiHKCI CYCGRG 2 cut(s) 359, 1887
BsiSI CCGG 4 cut(s) 69, 441, 738, 968
BslFI GGGAC 2 cut(s) 1132, 1473
BslI CCNNNNNNNGG 2 cut(s) 406, 1768
BsmAI GTCTC 3 cut(s) 125, 480, 677
BsmFI GGGAC 2 cut(s) 1132, 1473
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 4 cut(s) 15, 782, 1556, 1871
BsoBI CYCGRG 2 cut(s) 359, 1887
Bsp1286I GDGCHC 1 cut(s) 1894
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 5 cut(s) 355, 649, 859, 1032, 1206
BspACI CCGC 2 cut(s) 181, 1340
BspANI GGCC 4 cut(s) 15, 782, 1556, 1871
BspCNI CTCAG 5 cut(s) 275, 682, 1149, 1238, 1860
BspEI TCCGGA 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 1773
BspPI GGATC 1 cut(s) 1027
BspT107I GGYRCC 1 cut(s) 1771
BsrI ACTGG 4 cut(s) 1005, 1182, 1372, 1454
BssECI CCNNGG 4 cut(s) 242, 405, 1557, 1767
BssMI GATC 5 cut(s) 355, 649, 859, 1032, 1206
BssT1I CCWWGG 3 cut(s) 242, 405, 1557
Bst2UI CCWGG 3 cut(s) 1596, 1695, 1776
Bst4CI ACNGT 2 cut(s) 158, 163
Bst6I CTCTTC 1 cut(s) 1791
BstBAI YACGTR 1 cut(s) 1475
BstC8I GCNNGC 5 cut(s) 776, 780, 924, 1051, 1759
BstDEI CTNAG 9 cut(s) 262, 386, 479, 690, 1136, 1225, 1835, 1847, 1920
BstDSI CCRYGG 1 cut(s) 1767
BstEII GGTNACC 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 1842
BstHHI GCGC 1 cut(s) 1841
BstKTI GATC 5 cut(s) 358, 652, 862, 1035, 1209
BstMAI GTCTC 3 cut(s) 125, 480, 677
BstMBI GATC 5 cut(s) 355, 649, 859, 1032, 1206
BstMWI GCNNNNNNNGC 4 cut(s) 114, 187, 1186, 1315
BstNI CCWGG 3 cut(s) 1596, 1695, 1776
BstNSI RCATGY 1 cut(s) 531
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 3 cut(s) 1594, 1693, 1774
BstV1I GCAGC 1 cut(s) 906
BstX2I RGATCY 2 cut(s) 355, 1032
BstYI RGATCY 2 cut(s) 355, 1032
Bsu36I CCTNAGG 1 cut(s) 1136
BsuI GTATCC 1 cut(s) 1336
BsuRI GGCC 4 cut(s) 15, 782, 1556, 1871
BtgI CCRYGG 1 cut(s) 1767
BtsIMutI CAGTG 3 cut(s) 1365, 1374, 1461
Cac8I GCNNGC 5 cut(s) 776, 780, 924, 1051, 1759
CfoI GCGC 1 cut(s) 1841
Cfr13I GGNCC 2 cut(s) 1554, 1870
CseI GACGC 1 cut(s) 545
Csp6I GTAC 6 cut(s) 159, 331, 381, 444, 1326, 1397
CviAII CATG 3 cut(s) 305, 528, 1270
CviQI GTAC 6 cut(s) 159, 331, 381, 444, 1326, 1397
DdeI CTNAG 9 cut(s) 262, 386, 479, 690, 1136, 1225, 1835, 1847, 1920
DpnI GATC 5 cut(s) 357, 651, 861, 1034, 1208
DpnII GATC 5 cut(s) 355, 649, 859, 1032, 1206
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 1791
EarI CTCTTC 1 cut(s) 1791
Eco130I CCWWGG 3 cut(s) 242, 405, 1557
Eco147I AGGCCT 1 cut(s) 782
Eco32I GATATC 1 cut(s) 1023
Eco47III AGCGCT 1 cut(s) 1840
Eco57I CTGAAG 2 cut(s) 1372, 1496
Eco81I CCTNAGG 1 cut(s) 1136
Eco88I CYCGRG 2 cut(s) 359, 1887
Eco91I GGTNACC 1 cut(s) 659
EcoO109I RGGNCCY 1 cut(s) 1554
EcoO65I GGTNACC 1 cut(s) 659
EcoRII CCWGG 3 cut(s) 1594, 1693, 1774
EcoRV GATATC 1 cut(s) 1023
EcoT14I CCWWGG 3 cut(s) 242, 405, 1557
EcoT22I ATGCAT 1 cut(s) 982
ErhI CCWWGG 3 cut(s) 242, 405, 1557
FaeI CATG 3 cut(s) 308, 531, 1273
FaqI GGGAC 2 cut(s) 1132, 1473
FatI CATG 3 cut(s) 304, 527, 1269
FbaI TGATCA 1 cut(s) 1206
Fnu4HI GCNGC 2 cut(s) 182, 920
Fsp4HI GCNGC 2 cut(s) 182, 920
FspBI CTAG 3 cut(s) 281, 1151, 1439
GlaI GCGC 1 cut(s) 1840
GluI GCNGC 2 cut(s) 182, 920
GsaI CCCAGC 1 cut(s) 1757
GsuI CTGGAG 2 cut(s) 1085, 1892
HaeII RGCGCY 1 cut(s) 1842
HaeIII GGCC 4 cut(s) 15, 782, 1556, 1871
HapII CCGG 4 cut(s) 69, 441, 738, 968
HgaI GACGC 1 cut(s) 545
HhaI GCGC 1 cut(s) 1841
Hin1II CATG 3 cut(s) 308, 531, 1273
Hin6I GCGC 1 cut(s) 1839
HinP1I GCGC 1 cut(s) 1839
HindIII AAGCTT 6 cut(s) 322, 546, 620, 772, 1384, 1917
HinfI GANTC 6 cut(s) 430, 483, 490, 1450, 1624, 1730
HpaII CCGG 4 cut(s) 69, 441, 738, 968
HphI GGTGA 8 cut(s) 14, 389, 653, 752, 968, 1040, 1111, 1875
Hpy188I TCNGA 4 cut(s) 616, 669, 1211, 1738
HpyAV CCTTC 3 cut(s) 674, 1622, 1784
HpyCH4III ACNGT 2 cut(s) 158, 163
HpyCH4IV ACGT 2 cut(s) 842, 1474
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 187, 1186, 1315
HpyF3I CTNAG 9 cut(s) 262, 386, 479, 690, 1136, 1225, 1835, 1847, 1920
HpySE526I ACGT 2 cut(s) 842, 1474
Hsp92II CATG 3 cut(s) 308, 531, 1273
HspAI GCGC 1 cut(s) 1839
Kpn2I TCCGGA 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 1206
Kzo9I GATC 5 cut(s) 355, 649, 859, 1032, 1206
LmnI GCTCC 2 cut(s) 1088, 1697
Lsp1109I GCAGC 1 cut(s) 906
LweI GCATC 2 cut(s) 967, 1102
MaeI CTAG 3 cut(s) 281, 1151, 1439
MaeII ACGT 2 cut(s) 842, 1474
MaeIII GTNAC 9 cut(s) 140, 215, 641, 659, 1259, 1363, 1497, 1663, 1748
MalI GATC 5 cut(s) 357, 651, 861, 1034, 1208
MboI GATC 5 cut(s) 355, 649, 859, 1032, 1206
MboII GAAGA 8 cut(s) 701, 766, 794, 1006, 1395, 1502, 1549, 1808
MfeI CAATTG 1 cut(s) 269
MflI RGATCY 2 cut(s) 355, 1032
MhlI GDGCHC 1 cut(s) 1894
MlsI TGGCCA 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 3 cut(s) 492, 1618, 1739
MmeI TCCRAC 4 cut(s) 612, 819, 1110, 1393
Mox20I TGGCCA 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 982
MroI TCCGGA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 1603
MscI TGGCCA 1 cut(s) 15
MseI TTAA 4 cut(s) 1266, 1284, 1382, 1550
Msp20I TGGCCA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 919
MspI CCGG 4 cut(s) 69, 441, 738, 968
MspR9I CCNGG 3 cut(s) 1596, 1695, 1776
MunI CAATTG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 3 cut(s) 1596, 1695, 1776
MwoI GCNNNNNNNGC 4 cut(s) 114, 187, 1186, 1315
NdeII GATC 5 cut(s) 355, 649, 859, 1032, 1206
NlaIII CATG 3 cut(s) 308, 531, 1273
NlaIV GGNNCC 1 cut(s) 1773
NmuCI GTSAC 4 cut(s) 659, 1363, 1497, 1748
NsiI ATGCAT 1 cut(s) 982
NspI RCATGY 1 cut(s) 531
PaeR7I CTCGAG 1 cut(s) 1887
PceI AGGCCT 1 cut(s) 782
PciI ACATGT 1 cut(s) 527
PctI GAATGC 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 1603
PfeI GAWTC 3 cut(s) 430, 490, 1450
PflMI CCANNNNNTGG 1 cut(s) 406
PfoI TCCNGGA 2 cut(s) 1594, 1693
PkrI GCNGC 2 cut(s) 183, 921
PleI GAGTC 3 cut(s) 491, 1618, 1738
PpsI GAGTC 3 cut(s) 491, 1618, 1738
Ppu21I YACGTR 1 cut(s) 1475
PscI ACATGT 1 cut(s) 527
Psp6I CCWGG 3 cut(s) 1594, 1693, 1774
PspEI GGTNACC 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 1753
PspGI CCWGG 3 cut(s) 1594, 1693, 1774
PspN4I GGNNCC 1 cut(s) 1773
PspPI GGNCC 2 cut(s) 1554, 1870
PspXI VCTCGAGB 1 cut(s) 1887
PsuI RGATCY 2 cut(s) 355, 1032
PvuII CAGCTG 1 cut(s) 919
RsaI GTAC 6 cut(s) 160, 332, 382, 445, 1327, 1398
RsaNI GTAC 6 cut(s) 159, 331, 381, 444, 1326, 1397
SaqAI TTAA 4 cut(s) 1266, 1284, 1382, 1550
SatI GCNGC 2 cut(s) 182, 920
Sau3AI GATC 5 cut(s) 355, 649, 859, 1032, 1206
Sau96I GGNCC 2 cut(s) 1554, 1870
SchI GAGTC 3 cut(s) 492, 1618, 1739
ScrFI CCNGG 3 cut(s) 1596, 1695, 1776
SduI GDGCHC 1 cut(s) 1894
SfaNI GCATC 2 cut(s) 967, 1102
Sfr274I CTCGAG 1 cut(s) 1887
SlaI CTCGAG 1 cut(s) 1887
SmlI CTYRAG 2 cut(s) 637, 1887
SmoI CTYRAG 2 cut(s) 637, 1887
SseBI AGGCCT 1 cut(s) 782
SsiI CCGC 2 cut(s) 181, 1340
SspI AATATT 1 cut(s) 350
SspMI CTAG 3 cut(s) 281, 1151, 1439
StuI AGGCCT 1 cut(s) 782
StyD4I CCNGG 3 cut(s) 1594, 1693, 1774
StyI CCWWGG 3 cut(s) 242, 405, 1557
TaaI ACNGT 2 cut(s) 158, 163
TaiI ACGT 2 cut(s) 845, 1477
TaqI TCGA 3 cut(s) 428, 1130, 1888
TatI WGTACW 2 cut(s) 330, 1396
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 3 cut(s) 430, 490, 1450
Tru1I TTAA 4 cut(s) 1266, 1284, 1382, 1550
Tru9I TTAA 4 cut(s) 1266, 1284, 1382, 1550
TscAI CASTG 3 cut(s) 1372, 1381, 1461
TseFI GTSAC 4 cut(s) 659, 1363, 1497, 1748
TseI GCWGC 1 cut(s) 919
Tsp45I GTSAC 4 cut(s) 659, 1363, 1497, 1748
TspDTI ATGAA 7 cut(s) 17, 288, 293, 558, 603, 1176, 1237
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 1372, 1381, 1461
Van91I CCANNNNNTGG 1 cut(s) 406
XapI RAATTY 9 cut(s) 18, 312, 816, 835, 960, 1163, 1235, 1279, 1492
XceI RCATGY 1 cut(s) 531
XhoI CTCGAG 1 cut(s) 1887
XmnI GAANNNNTTC 1 cut(s) 1603
XspI CTAG 3 cut(s) 281, 1151, 1439
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.