Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016622

Physical Location & Seq

Genomic Coordinates Forward (+)

49372834 .. 49376572

Gene Structure 3739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2289 bp

ATGAGGAGGAGCAGGATTCCGGTAATGGGTAATCTGAGAAGGGTGTTCAGGAAAGTGAAGAAGGAAGTGGGGAGAGATTTGGCCATTGATGATGGTGCACAAGAAGAGGAAGGGTGGTTTTTACCCTCTAGTGATCTTAAGTTAGCTGCACAGCTACTGGTTTTGTTAGTGCTTCTATGCTCAAATCTTTCTCAAAGTCTTGATCTTGATCCGCAAGATAAAGCTTCCATGTTGAAATTTAGGTCAGGGGTTCAAGACCCTAGCCAGAGCTTGTCAAGCTGGGCTGGGTCTAGTTGTGCCAACTGGACTGGAATCACCTGCCAGAACCAGACTGGTAGAGTGGTTTCGATTGACTTGACCAATATGAACTTGTCAGGCCAAATTGACCCCAGTTTGTGCAAGCTTCCATTTCTTCAAGATTTGGTTTTGTCCCAGAACAACATTAGTTGCCCAATACCAGTATGTTTAGGCACTCTGAGCTTTCTCAGGACTCTACATCTTGGTCACAATAGGTTTCGGGGTGTGGTGCCTGATACATTCATGAGGCTCGGGCAGTTGAAAGAACTTGTTTTGAATGGTAATAATGATTTGGGAGGTGTTATTCCTTGGTGGGTTGGTAATTTCTCAGCACAGTTGGAAAAGCTAGATATGGGTTTTAATTCATTTCATGGGGAGATTCCTCAAAGCTTGTTGTACTTGAAATCTCTCAAGTATTTGGATCTTGGGAACAATAATTTATCTGGCAGTCTTAGTGATTTTCACCAATCTTTGGTGTTTCTCAATCTTGGATCGAACCAGTTTTCGGGTACTTTACCTTGTTTCTCTACTTGTGAGCAGTCTCTTAGAGTTTTGAATCTGGCTAACAATTCTGTGGTCGGAGGCATACCTACTTGTATTGCTTCACTTCAAGCTTTGCAACATCTGAACCTTTCATCCAATCAATTGACTTACGAGATGTCTCCAAGACTTGTGTTTTCGGAGAAGCTTCTTCTCTTGGACTTGAGTAACAATGAGTTGTCTGGTCCTCTTCCGAGCAAGGTTGCAGAGACAACGGATAAATCCGGGCTTGTTCTTCTTGATTTGTCTCACAATCGTTTCTCTGGTGAAATCCCATTGAAGATTACAGAACTGAAGAGCCTGCAGGCACTGTTTCTATCGCACAATCTTCTTGTTGGGGAAATTCCCGCGAGGATTGGCAACCTAACCTATCTACAAGTGATTGATCTCTCACACAACTCATTATCAGGTTCAATTCCATTAAACATCGTTGGTTGTTTTCAGCTGCTTGCATTGATACTCAATAACAACAATCTTTCTGGTGAAATTCAACCCGAACTTGATGCATTGGATAGCTTGAAGATACTGGATATTAGCAACAACAAGATATCTGGGGAAATCCCACTTACTTTGGCTGGCTGTAAATCACTCGAGATTGTAGATTTCAGCTCCAACAATCTCTCTGGAACTTTGAGTGATGCAATAACCAAATGGTCAAACCTCAGGTATCTGTCCCTTGCTCGTAATGAATTTACTGGAAATCTGCCTAGTTGGCTCTTTACTTTTGAAGTGATCAGAATGATGGATTTCTCAGGAAACAAATTTTCTGGCTTCATACCAGAGGGTAATTTTAACATGAGCATAAATTTTAACAATGGAGAGATTGATAGAATGCAGAGAGATCCATTTGTTTCAATGCAGAATGTGGATACGAAAGTGTTGATTGTTGTCACTGGTAGTATTGAATTAAGCTTCAGTTATATACTATCTTCAATGGTTGGAATTGATTTCTCTAACAATGTGCTCATTGGGGAGGTTCCAGTGGGGCTGTTTGGATTACATGGTTTGGAATACTTGAATCTGTCGCACAATTTTCTTCATGGTGGGGTTCCGGATTTAGAAAAGATGTGGAGTTTAAAGGCCTTAGATTTGTCCCATAATGCTTTATCAGGTCACATTCCAGGAAACATTTCCAGCCTTCCAGACCTGACTCGTTTGGATTTGTCATATAACTCTTTTTCTGGGTTTGTTACCAAGAAGCAAGGATATAAGAGGTTTCCGGGAGCATTTGCTGGAAATCCAAATTTGTGTTTGGAGTCCTCTGATGGAGGGTGTGATCCGGCAAGCCTTCCGGTGGTGCCCGGGAAGGCATTTGAAGGGGAAGAAGAGGTTGAGGGGCGGATTTCTGTTTGGGTCTTTTGTGTAAGTGCATTCCTCAGTTTCTACTTTGGGGGCTTGGCCCTCTTTTGCTCCCCTCGAGCTCGGAAATACATTCTGCATATAAAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0012505 GO:0016020 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

763

Amino Acids

83.53

Weight (kDa)

5.68

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	71 - 107	1.5e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	120 - 315	5.8e-10	Leucine-rich repeat region
LRR_8	PF13855	138 - 195	1.2e-06	Leucine rich repeat
LRR_14	PF23598	358 - 460	2.1e-06	Leucine-rich repeat region
LRR_4	PF12799	451 - 492	1.9e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	635 - 671	9.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65380
fragaria_vesca	FvH4_6g00680
prunus_persica	Prupe.6G359800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448121
rosa_laevigata	RLG00000025945 RLG00000026021
rosa_multiflora	Rmu_sc0005969.1_g000028
rosa_roxburghii	Rroxscaffold_6G00426250
rosa_rugosa	Rorug02G0608300
rosa_samantha	Rh3BG007600 Rh3CG007600 Rh3DG008100 Rh5DG014100
rosa_wichuraiana	Rw3G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	526, 2134
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccII	CGCG	1 cut(s)	1187
AccIII	TCCGGA	1 cut(s)	1888
AciI	CCGC	3 cut(s)	212, 1185, 2176
AclWI	GGATC	5 cut(s)	203, 726, 796, 1673, 2108
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	7 cut(s)	236, 1179, 1323, 1526, 1598, 1642, 2080
AcuI	CTGAAG	2 cut(s)	1151, 1735
AfaI	GTAC	2 cut(s)	695, 808
AfiI	CCNNNNNNNGG	4 cut(s)	26, 769, 802, 2131
AflII	CTTAAG	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	1957
AloI	GAACNNNNNNTCC	2 cut(s)	917, 949
Alw21I	GWGCWC	3 cut(s)	100, 1803, 2260
Alw26I	GTCTC	4 cut(s)	843, 963, 1040, 1089
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	5 cut(s)	203, 726, 796, 1673, 2108
AlwNI	CAGNNNCTG	2 cut(s)	157, 1147
Ama87I	CYCGRG	4 cut(s)	548, 1427, 2138, 2253
Aor13HI	TCCGGA	1 cut(s)	1888
AoxI	GGCC	4 cut(s)	81, 376, 1917, 2235
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	146, 1282
ApoI	RAATTY	7 cut(s)	236, 1179, 1323, 1526, 1598, 1642, 2080
Asp700I	GAANNNNTTC	1 cut(s)	1966
AspS9I	GGNCC	2 cut(s)	1022, 2236
AsuC2I	CCSGG	4 cut(s)	1063, 2058, 2139, 2140
AsuHPI	GGTGA	4 cut(s)	307, 752, 1115, 1331
AvaI	CYCGRG	4 cut(s)	548, 1427, 2138, 2253
AvaII	GGWCC	1 cut(s)	1022
AxyI	CCTNAGG	1 cut(s)	1499
BaeGI	GKGCMC	2 cut(s)	100, 2139
BaeI	ACNNNNGTAYC	2 cut(s)	1698, 1731
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	526, 2134
BanII	GRGCYC	1 cut(s)	2260
Bbv12I	GWGCWC	3 cut(s)	100, 1803, 2260
BbvI	GCAGC	2 cut(s)	133, 1269
BccI	CCATC	3 cut(s)	86, 1573, 2096
BcgI	CGANNNNNNTGC	2 cut(s)	1322, 1356
BciT130I	CCWGG	1 cut(s)	1959
BciVI	GTATCC	1 cut(s)	1699
BclI	TGATCA	1 cut(s)	1569
BcnI	CCSGG	4 cut(s)	1063, 2058, 2139, 2140
BcoDI	GTCTC	4 cut(s)	843, 963, 1040, 1089
BfaI	CTAG	6 cut(s)	129, 261, 291, 644, 1545, 2287
BfmI	CTRYAG	1 cut(s)	1139
BfrI	CTTAAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	1699
BglI	GCCNNNNNGGC	1 cut(s)	1549
BisI	GCNGC	2 cut(s)	147, 1283
BlsI	GCNGC	2 cut(s)	148, 1284
Bme1390I	CCNGG	5 cut(s)	1063, 1959, 2058, 2139, 2140
Bme18I	GGWCC	1 cut(s)	1022
BmeT110I	CYCGRG	4 cut(s)	548, 1427, 2138, 2253
BmgT120I	GGNCC	2 cut(s)	1022, 2236
BmiI	GGNNCC	4 cut(s)	528, 1815, 1887, 2136
BmrFI	CCNGG	5 cut(s)	1063, 1959, 2058, 2139, 2140
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	1330, 1465
BmuI	ACTGGG	1 cut(s)	384
BpuEI	CTTGAG	2 cut(s)	692, 1021
BpuMI	CCSGG	4 cut(s)	1063, 2058, 2139, 2140
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	605, 2138
BsaWI	WCCGGW	3 cut(s)	19, 1888, 2128
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 769, 802, 2131
Bse21I	CCTNAGG	1 cut(s)	1499
Bse8I	GATNNNNATC	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	1888
BseBI	CCWGG	1 cut(s)	1959
BseDI	CCNNGG	2 cut(s)	605, 2138
BseGI	GGATG	1 cut(s)	932
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	4 cut(s)	26, 769, 802, 2131
BseMII	CTCAG	7 cut(s)	26, 467, 499, 639, 1513, 1602, 2227
BseRI	GAGGAG	2 cut(s)	19, 22
BseSI	GKGCMC	2 cut(s)	100, 2139
BseXI	GCAGC	2 cut(s)	133, 1269
BseYI	CCCAGC	2 cut(s)	279, 284
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	1187
BshFI	GGCC	4 cut(s)	83, 378, 1919, 2237
BshNI	GGYRCC	2 cut(s)	526, 2134
BsiHKAI	GWGCWC	3 cut(s)	100, 1803, 2260
BsiHKCI	CYCGRG	4 cut(s)	548, 1427, 2138, 2253
BsiSI	CCGG	7 cut(s)	20, 1062, 1889, 2057, 2117, 2129, 2139
BslFI	GGGAC	3 cut(s)	415, 1495, 1915
BslI	CCNNNNNNNGG	4 cut(s)	26, 769, 802, 2131
BsmAI	GTCTC	4 cut(s)	843, 963, 1040, 1089
BsmFI	GGGAC	3 cut(s)	415, 1495, 1915
BsmI	GAATGC	2 cut(s)	1674, 2207
BsnI	GGCC	4 cut(s)	83, 378, 1919, 2237
BsoBI	CYCGRG	4 cut(s)	548, 1427, 2138, 2253
Bsp1286I	GDGCHC	4 cut(s)	100, 1803, 2139, 2260
Bsp13I	TCCGGA	1 cut(s)	1888
Bsp143I	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
BspACI	CCGC	3 cut(s)	212, 1185, 2176
BspANI	GGCC	4 cut(s)	83, 378, 1919, 2237
BspCNI	CTCAG	7 cut(s)	27, 468, 498, 638, 1512, 1601, 2226
BspEI	TCCGGA	1 cut(s)	1888
BspFNI	CGCG	1 cut(s)	1187
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	4 cut(s)	528, 1815, 1887, 2136
BspMAI	CTGCAG	1 cut(s)	1143
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	5 cut(s)	203, 726, 796, 1673, 2108
BspQI	GCTCTTC	1 cut(s)	1127
BspT107I	GGYRCC	2 cut(s)	526, 2134
BspTI	CTTAAG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	605, 2138
BssMI	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
BssT1I	CCWWGG	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	1959
Bst4CI	ACNGT	2 cut(s)	633, 1149
Bst6I	CTCTTC	4 cut(s)	99, 1032, 1127, 2157
BstAFI	CTTAAG	1 cut(s)	137
BstC8I	GCNNGC	6 cut(s)	401, 1139, 1143, 1287, 1414, 2122
BstF5I	GGATG	1 cut(s)	932
BstFNI	CGCG	1 cut(s)	1187
BstKTI	GATC	9 cut(s)	136, 205, 211, 721, 791, 1225, 1572, 1681, 2116
BstMAI	GTCTC	4 cut(s)	843, 963, 1040, 1089
BstMBI	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 477, 1549
BstNI	CCWGG	1 cut(s)	1959
BstSCI	CCNGG	5 cut(s)	1061, 1957, 2056, 2137, 2138
BstSFI	CTRYAG	1 cut(s)	1139
BstSLI	GKGCMC	2 cut(s)	100, 2139
BstUI	CGCG	1 cut(s)	1187
BstV1I	GCAGC	2 cut(s)	133, 1269
BstX2I	RGATCY	2 cut(s)	718, 1678
BstYI	RGATCY	2 cut(s)	718, 1678
Bsu36I	CCTNAGG	1 cut(s)	1499
BsuI	GTATCC	1 cut(s)	1699
BsuRI	GGCC	4 cut(s)	83, 378, 1919, 2237
BtsCI	GGATG	1 cut(s)	932
BtsIMutI	CAGTG	3 cut(s)	1145, 1728, 1824
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	6 cut(s)	401, 1139, 1143, 1287, 1414, 2122
CaiI	CAGNNNCTG	2 cut(s)	157, 1147
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	1022, 2236
Cfr9I	CCCGGG	1 cut(s)	2138
Csp6I	GTAC	2 cut(s)	694, 807
CspCI	CAANNNNNGTGG	2 cut(s)	1389, 1424
CviAII	CATG	6 cut(s)	229, 541, 668, 1633, 1838, 1877
CviQI	GTAC	2 cut(s)	694, 807
DpnI	GATC	9 cut(s)	135, 204, 210, 720, 790, 1224, 1571, 1680, 2115
DpnII	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
DraI	TTTAAA	1 cut(s)	1914
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	4 cut(s)	99, 1032, 1127, 2157
EarI	CTCTTC	4 cut(s)	99, 1032, 1127, 2157
EciI	GGCGGA	1 cut(s)	2191
Ecl136II	GAGCTC	1 cut(s)	2258
Eco130I	CCWWGG	1 cut(s)	605
Eco147I	AGGCCT	1 cut(s)	1919
Eco24I	GRGCYC	1 cut(s)	2260
Eco32I	GATATC	1 cut(s)	1386
Eco47I	GGWCC	1 cut(s)	1022
Eco53kI	GAGCTC	1 cut(s)	2258
Eco57I	CTGAAG	2 cut(s)	1151, 1735
Eco81I	CCTNAGG	1 cut(s)	1499
Eco88I	CYCGRG	4 cut(s)	548, 1427, 2138, 2253
EcoICRI	GAGCTC	1 cut(s)	2258
EcoRII	CCWGG	1 cut(s)	1957
EcoRV	GATATC	1 cut(s)	1386
EcoT14I	CCWWGG	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	1345
EcoT38I	GRGCYC	1 cut(s)	2260
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	6 cut(s)	232, 544, 671, 1636, 1841, 1880
FaqI	GGGAC	3 cut(s)	415, 1495, 1915
FatI	CATG	6 cut(s)	228, 540, 667, 1632, 1837, 1876
FauI	CCCGC	1 cut(s)	1192
FbaI	TGATCA	1 cut(s)	1569
Fnu4HI	GCNGC	2 cut(s)	147, 1283
FokI	GGATG	1 cut(s)	919
FriOI	GRGCYC	1 cut(s)	2260
Fsp4HI	GCNGC	2 cut(s)	147, 1283
FspBI	CTAG	6 cut(s)	129, 261, 291, 644, 1545, 2287
GluI	GCNGC	2 cut(s)	147, 1283
GsaI	CCCAGC	2 cut(s)	283, 288
HaeIII	GGCC	4 cut(s)	83, 378, 1919, 2237
HapII	CCGG	7 cut(s)	20, 1062, 1889, 2057, 2117, 2129, 2139
Hin1II	CATG	6 cut(s)	232, 544, 671, 1636, 1841, 1880
HindIII	AAGCTT	6 cut(s)	222, 401, 685, 909, 983, 1747
HinfI	GANTC	8 cut(s)	16, 312, 490, 676, 853, 1855, 1987, 2093
HpaII	CCGG	7 cut(s)	20, 1062, 1889, 2057, 2117, 2129, 2139
HphI	GGTGA	4 cut(s)	307, 752, 1115, 1331
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	9 cut(s)	36, 477, 878, 924, 979, 1032, 1574, 2101, 2262
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	7 cut(s)	33, 55, 104, 1985, 2135, 2137, 2147
HpyCH4III	ACNGT	2 cut(s)	633, 1149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 477, 1549
Hsp92II	CATG	6 cut(s)	232, 544, 671, 1636, 1841, 1880
Kpn2I	TCCGGA	1 cut(s)	1888
Ksp22I	TGATCA	1 cut(s)	1569
Kzo9I	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
LguI	GCTCTTC	1 cut(s)	1127
LmnI	GCTCC	4 cut(s)	9, 1451, 2060, 2252
Lsp1109I	GCAGC	2 cut(s)	133, 1269
LweI	GCATC	2 cut(s)	1330, 1465
MaeI	CTAG	6 cut(s)	129, 261, 291, 644, 1545, 2287
MaeIII	GTNAC	5 cut(s)	503, 1004, 1726, 1949, 2026
MalI	GATC	9 cut(s)	135, 204, 210, 720, 790, 1224, 1571, 1680, 2115
MboI	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
MfeI	CAATTG	1 cut(s)	941
MflI	RGATCY	2 cut(s)	718, 1678
MhlI	GDGCHC	4 cut(s)	100, 1803, 2139, 2260
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	3 cut(s)	484, 1981, 2102
MmeI	TCCRAC	4 cut(s)	615, 856, 1473, 1756
Mox20I	TGGCCA	1 cut(s)	83
Mph1103I	ATGCAT	1 cut(s)	1345
MroI	TCCGGA	1 cut(s)	1888
MroXI	GAANNNNTTC	1 cut(s)	1966
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	7 cut(s)	138, 657, 1259, 1629, 1647, 1745, 1913
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	1282
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	7 cut(s)	20, 1062, 1889, 2057, 2117, 2129, 2139
MspR9I	CCNGG	5 cut(s)	1063, 1959, 2058, 2139, 2140
MunI	CAATTG	1 cut(s)	941
Mva1269I	GAATGC	2 cut(s)	1674, 2207
MvaI	CCWGG	1 cut(s)	1959
MvnI	CGCG	1 cut(s)	1187
MwoI	GCNNNNNNNGC	3 cut(s)	276, 477, 1549
NciI	CCSGG	4 cut(s)	1063, 2058, 2139, 2140
NdeII	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
NlaIII	CATG	6 cut(s)	232, 544, 671, 1636, 1841, 1880
NlaIV	GGNNCC	4 cut(s)	528, 1815, 1887, 2136
NmuCI	GTSAC	3 cut(s)	503, 1726, 1949
NsiI	ATGCAT	1 cut(s)	1345
PaeR7I	CTCGAG	2 cut(s)	1427, 2253
PagI	TCATGA	1 cut(s)	540
PaqCI	CACCTGC	1 cut(s)	326
PceI	AGGCCT	1 cut(s)	1919
PciSI	GCTCTTC	1 cut(s)	1127
PctI	GAATGC	2 cut(s)	1674, 2207
PdmI	GAANNNNTTC	1 cut(s)	1966
PfeI	GAWTC	5 cut(s)	16, 312, 676, 853, 1855
PflMI	CCANNNNNTGG	1 cut(s)	769
PfoI	TCCNGGA	2 cut(s)	1957, 2056
PkrI	GCNGC	2 cut(s)	148, 1284
PleI	GAGTC	3 cut(s)	484, 1981, 2101
PpsI	GAGTC	3 cut(s)	484, 1981, 2101
Psp124BI	GAGCTC	1 cut(s)	2260
Psp6I	CCWGG	1 cut(s)	1957
PspFI	CCCAGC	2 cut(s)	279, 284
PspGI	CCWGG	1 cut(s)	1957
PspN4I	GGNNCC	4 cut(s)	528, 1815, 1887, 2136
PspPI	GGNCC	2 cut(s)	1022, 2236
PspXI	VCTCGAGB	1 cut(s)	2253
PstI	CTGCAG	1 cut(s)	1143
PstNI	CAGNNNCTG	2 cut(s)	157, 1147
PsuI	RGATCY	2 cut(s)	718, 1678
PvuII	CAGCTG	1 cut(s)	1282
RsaI	GTAC	2 cut(s)	695, 808
RsaNI	GTAC	2 cut(s)	694, 807
SacI	GAGCTC	1 cut(s)	2260
SapI	GCTCTTC	1 cut(s)	1127
SaqAI	TTAA	7 cut(s)	138, 657, 1259, 1629, 1647, 1745, 1913
SatI	GCNGC	2 cut(s)	147, 1283
Sau3AI	GATC	9 cut(s)	133, 202, 208, 718, 788, 1222, 1569, 1678, 2113
Sau96I	GGNCC	2 cut(s)	1022, 2236
SbfI	CCTGCAGG	1 cut(s)	1143
SchI	GAGTC	3 cut(s)	484, 1981, 2102
ScrFI	CCNGG	5 cut(s)	1063, 1959, 2058, 2139, 2140
SdaI	CCTGCAGG	1 cut(s)	1143
SduI	GDGCHC	4 cut(s)	100, 1803, 2139, 2260
SfaNI	GCATC	2 cut(s)	1330, 1465
SfcI	CTRYAG	1 cut(s)	1139
Sfr274I	CTCGAG	2 cut(s)	1427, 2253
SinI	GGWCC	1 cut(s)	1022
SlaI	CTCGAG	2 cut(s)	1427, 2253
SmaI	CCCGGG	1 cut(s)	2140
SmlI	CTYRAG	5 cut(s)	137, 707, 1000, 1427, 2253
SmoI	CTYRAG	5 cut(s)	137, 707, 1000, 1427, 2253
Sse8387I	CCTGCAGG	1 cut(s)	1143
SseBI	AGGCCT	1 cut(s)	1919
SsiI	CCGC	3 cut(s)	212, 1185, 2176
SspMI	CTAG	6 cut(s)	129, 261, 291, 644, 1545, 2287
SstI	GAGCTC	1 cut(s)	2260
StuI	AGGCCT	1 cut(s)	1919
StyD4I	CCNGG	5 cut(s)	1061, 1957, 2056, 2137, 2138
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	633, 1149
TaqI	TCGA	4 cut(s)	347, 791, 1428, 2254
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	5 cut(s)	16, 312, 676, 853, 1855
Tru1I	TTAA	7 cut(s)	138, 657, 1259, 1629, 1647, 1745, 1913
Tru9I	TTAA	7 cut(s)	138, 657, 1259, 1629, 1647, 1745, 1913
TscAI	CASTG	3 cut(s)	1152, 1735, 1824
TseFI	GTSAC	3 cut(s)	503, 1726, 1949
TseI	GCWGC	2 cut(s)	146, 1282
Tsp45I	GTSAC	3 cut(s)	503, 1726, 1949
TspDTI	ATGAA	8 cut(s)	380, 529, 651, 656, 921, 1539, 1600, 1865
TspGWI	ACGGA	1 cut(s)	1067
TspMI	CCCGGG	1 cut(s)	2138
TspRI	CASTG	3 cut(s)	1152, 1735, 1824
Van91I	CCANNNNNTGG	1 cut(s)	769
Vha464I	CTTAAG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	1022
XapI	RAATTY	7 cut(s)	236, 1179, 1323, 1526, 1598, 1642, 2080
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XhoI	CTCGAG	2 cut(s)	1427, 2253
XmaI	CCCGGG	1 cut(s)	2138
XmnI	GAANNNNTTC	1 cut(s)	1966
XspI	CTAG	6 cut(s)	129, 261, 291, 644, 1545, 2287
Zsp2I	ATGCAT	1 cut(s)	1345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.