Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016622

Physical Location & Seq

Genomic Coordinates Forward (+)

992400 .. 997155

Gene Structure 4756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG014100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCTCTTTGTGTTTCTCTCACCCATGAAAATGTTCGGAATCACTATTCACTAGTGGCGAAGAAGAGAGCTCAGCAACTGATTCTGACATTGCTTGGGAAGCCATTGACCTCAGCAACTGATTCTGATTCTGACATCAGGTCAGGGGTTCAAGACCCCAGCCAGAGCTTGTCAAGCTGGGCTGGGTCTAGTTGTGCCAACTGGACTGGAATCACCTGCCAGAACCAGACTGGTAGAGTGGTTTCGATTGACTTGACCAATATGAACTTGTCAGGCCAAATTGACCCCAGTTTGTGCAAGCTTCCATTTCTTCAAGATTTGGTTTTGTCCCAGAACAACTTTAGTTGCCCAATACCAGTATGTTTAGGCACTCTGAGCTTTCTCAGGACTCTACATCTTGGTCACAATAGGTTTCGGGGTGTGGTGCCTGATACATTCATGAGGCTCGGGCAGTTGAAAGAACTTGTTTTGAATGGTAATAATGATTTGGGAGGTGTTATTCCTTGGTGGGTTGGTAATTTCTCAGCACAGTTGGAAAGGCTAGATATGGGTTTCAATTCATTTCATGGGGAGATTCCTCAAAGCTTGTTGTACTTGAAATCTCTCAAGTATTTGGTGGAGGTGAGGCATGGCGATTGTAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0012505 GO:0016020 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

215

Amino Acids

23.74

Weight (kDa)

7.6

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	85 - 205	2.9e-07	Leucine-rich repeat region
LRR_8	PF13855	124 - 161	2.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65380
fragaria_vesca	FvH4_6g00680
prunus_persica	Prupe.6G359800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448121
rosa_laevigata	RLG00000025945 RLG00000026021
rosa_multiflora	Rmu_sc0005969.1_g000028
rosa_roxburghii	Rroxscaffold_6G00426250
rosa_rugosa	Rorug02G0608300
rosa_samantha	Rh3BG007600 Rh3CG007600 Rh3DG008100 Rh5DG014100
rosa_wichuraiana	Rw3G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	593
AgsI	TTSAA	6 cut(s)	152, 314, 457, 472, 556, 598
AhdI	GACNNNNNGTC	1 cut(s)	139
AhlI	ACTAGT	1 cut(s)	52
AluBI	AGCT	6 cut(s)	71, 168, 177, 301, 378, 585
AluI	AGCT	6 cut(s)	71, 168, 177, 301, 378, 585
Alw21I	GWGCWC	1 cut(s)	73
AlwNI	CAGNNNCTG	2 cut(s)	79, 119
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	13, 205, 634
AvaI	CYCGRG	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 189, 542
BfuAI	ACCTGC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	72
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	503
Bse1I	ACTGG	5 cut(s)	206, 211, 235, 288, 356
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	5 cut(s)	86, 126, 365, 397, 537
BseNI	ACTGG	5 cut(s)	206, 211, 235, 288, 356
BseYI	CCCAGC	3 cut(s)	158, 177, 182
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	276
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp1720I	GCTNAGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	5 cut(s)	85, 125, 366, 396, 536
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	5 cut(s)	206, 211, 235, 288, 356
BssECI	CCNNGG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	5 cut(s)	72, 112, 374, 383, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 174, 375
BsuRI	GGCC	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	2 cut(s)	79, 119
CciI	TCATGA	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	4 cut(s)	26, 439, 566, 629
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	5 cut(s)	72, 112, 374, 383, 523
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	4 cut(s)	29, 442, 569, 632
FaiI	YATR	7 cut(s)	27, 263, 361, 440, 548, 567, 630
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	25, 438, 565, 628
FriOI	GRGCYC	1 cut(s)	73
FspBI	CTAG	3 cut(s)	53, 189, 542
GsaI	CCCAGC	3 cut(s)	162, 181, 186
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	29, 442, 569, 632
HindIII	AAGCTT	2 cut(s)	299, 583
HinfI	GANTC	7 cut(s)	40, 82, 122, 128, 210, 388, 574
HphI	GGTGA	3 cut(s)	13, 205, 634
Hpy188I	TCNGA	5 cut(s)	39, 87, 127, 133, 375
Hpy188III	TCNNGA	4 cut(s)	152, 314, 385, 439
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 174, 375
HpyF3I	CTNAG	5 cut(s)	72, 112, 374, 383, 523
Hsp92II	CATG	4 cut(s)	29, 442, 569, 632
MaeI	CTAG	3 cut(s)	53, 189, 542
MaeIII	GTNAC	1 cut(s)	401
MboII	GAAGA	3 cut(s)	73, 76, 302
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	4 cut(s)	279, 517, 556, 640
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	7 cut(s)	15, 121, 435, 485, 588, 613, 618
MroXI	GAANNNNTTC	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	100, 174, 375
NlaIII	CATG	4 cut(s)	29, 442, 569, 632
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	6 cut(s)	40, 82, 122, 128, 210, 574
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Psp124BI	GAGCTC	1 cut(s)	73
PspFI	CCCAGC	3 cut(s)	158, 177, 182
PspN4I	GGNNCC	1 cut(s)	426
PstNI	CAGNNNCTG	2 cut(s)	79, 119
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	4 cut(s)	279, 517, 556, 640
SspMI	CTAG	3 cut(s)	53, 189, 542
SstI	GAGCTC	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	531
TaqI	TCGA	1 cut(s)	245
TasI	AATT	4 cut(s)	279, 517, 556, 640
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	6 cut(s)	40, 82, 122, 128, 210, 574
TseFI	GTSAC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	5 cut(s)	42, 278, 427, 549, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	3 cut(s)	53, 189, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.