Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016622

Physical Location & Seq

Genomic Coordinates Reverse (-)

526784 .. 528979

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGGACACAAATGGGCTTCAGGGTTTTTACCCTTTAGTGATCTTAAGTTAGCTGCACAGCTACTGGTTTTGTTAGTGCTTCTGTGCTCAAGTCTTTCTCAAAGTCTTGATCTTGATCCGGAAGATAAAGCTTCCATGTTGAAATTCAGGTCAGGGGTTCAAGACCCTAGCCAGAGCTTGTCAAGCTGGGCTGGGTCTAGTTGTGCCAACTGGACTGGAATCACCTGCCAGAACCAGACTGGTAGAGTGGTTTCGATTGACTTGACCAATATGAACTTGTCAGGCCAAATTGACCCGAGTTTGTGCAAGCTTCCATTTCTTCAAGATTTGGTTTTGTCCCAGAACAACTTTAGTTGCCCAATACCACTGCTTGCATTGATACTCAATAACAACAATCTTTCTGGTGAAATTCAACCTGAACTTGATGCATTGGATAGCTTGAAGATACTGGATATTAGCAACAACAAGATATCTGGGGAAATCCCACTTACTTTGGCTGGCTGTAAATCACTCGAGATTGTAGATTTCAGCTCCAACAATCTCTCCGGAACTTTGAGTGATGCAATAACCAAATGGTCAAATCTCAGGTATCTGTCCCTTGCTCGTAATGAATTTGCTGGAAATCTGCCTAGTTGGCTCTTTACTTTTGAAGCGATCAGAATGATGGATTTCTCAGGAAACAAATTTTCTGGCTTCATACCAGAGGGTAATTTTAACATGAGCATAAATTTTAACAATGGAGAGGTTGATAGAATGCAGAGAGATCCATTTGTTTCAATGCAGAATGTGGATACAAAAGTGTTGATTGTTGTCACTGGTAGTATTGAATTAAGCTTCAGTTACATACTATCTTCAATGGTTGGAATCGATTTCTCTAACAATGTACTCATTGGGGAGGTTCCAGTGGGGCTGTTTGGATTACATGGTTTGGAATACTTGAATCTTTCGCACAATTTTCTTCATGGTGGGGTTCCGGATTTAGAAAAGATGTGGAGTTTAAAGGCCTTAGATTTGTCCCATAATGCTTTATCAGGTCACATTCCAGGAAACATTTCCAGCCTTCCGGACCTGACTCGTTTGGATTTGTCATATAACTCTTTTTCTGGGTTTGTGACCAAGAAGCAAGGATATCACAGGTTTCCGGGAGCATTTGCTGGAAATCCAAATTTGTGTTTAGAGTCCCCTGATGGAGGGTGTGATCCGGCAAGCCTTCCGGTGGTGCCCGGGAAGGCATTTGAAGGGGAAGAAGAGGTTGAGGGGCGGATTTCTGTTTGGGTTTTTTGTGTAAGTGCATTCCTCAGTTTCTACTTTGGGGGCTTGGCCCTTTTTTGCTCCCCTCGAGCTCGGAAATACATTCTGCATACAAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0012505 GO:0016020 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

457

Amino Acids

49.83

Weight (kDa)

5.06

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 76	1e-08	Leucine rich repeat N-terminal domain
LRR_4	PF12799	146 - 187	1.1e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	330 - 366	5.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65380
fragaria_vesca	FvH4_6g00680
prunus_persica	Prupe.6G359800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448121
rosa_laevigata	RLG00000025945 RLG00000026021
rosa_multiflora	Rmu_sc0005969.1_g000028
rosa_roxburghii	Rroxscaffold_6G00426250
rosa_rugosa	Rorug02G0608300
rosa_samantha	Rh3BG007600 Rh3CG007600 Rh3DG008100 Rh5DG014100
rosa_wichuraiana	Rw3G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	1219
AccIII	TCCGGA	4 cut(s)	118, 545, 973, 1063
AciI	CCGC	1 cut(s)	1261
AclWI	GGATC	3 cut(s)	110, 758, 1193
AcsI	RAATTY	6 cut(s)	143, 408, 611, 683, 727, 1165
AcuI	CTGAAG	1 cut(s)	820
AfaI	GTAC	1 cut(s)	885
AfiI	CCNNNNNNNGG	2 cut(s)	1190, 1216
AflII	CTTAAG	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	1042
Alw21I	GWGCWC	2 cut(s)	89, 1345
AlwI	GGATC	3 cut(s)	110, 758, 1193
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	4 cut(s)	295, 512, 1223, 1338
Aor13HI	TCCGGA	4 cut(s)	118, 545, 973, 1063
AoxI	GGCC	3 cut(s)	283, 1002, 1320
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	6 cut(s)	143, 408, 611, 683, 727, 1165
Asp700I	GAANNNNTTC	1 cut(s)	1051
AspS9I	GGNCC	2 cut(s)	1066, 1321
AsuC2I	CCSGG	3 cut(s)	1143, 1224, 1225
AsuHPI	GGTGA	2 cut(s)	214, 416
AvaI	CYCGRG	4 cut(s)	295, 512, 1223, 1338
AvaII	GGWCC	1 cut(s)	1066
BaeGI	GKGCMC	1 cut(s)	1224
BaeI	ACNNNNGTAYC	2 cut(s)	783, 816
BanI	GGYRCC	1 cut(s)	1219
BanII	GRGCYC	1 cut(s)	1345
Bbv12I	GWGCWC	2 cut(s)	89, 1345
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	658, 1181
BciT130I	CCWGG	1 cut(s)	1044
BciVI	GTATCC	1 cut(s)	784
BcnI	CCSGG	3 cut(s)	1143, 1224, 1225
BfaI	CTAG	3 cut(s)	168, 198, 630
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	784
BglI	GCCNNNNNGGC	1 cut(s)	634
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	1044, 1143, 1224, 1225
Bme18I	GGWCC	1 cut(s)	1066
BmeT110I	CYCGRG	4 cut(s)	295, 512, 1223, 1338
BmgT120I	GGNCC	2 cut(s)	1066, 1321
BmiI	GGNNCC	3 cut(s)	900, 972, 1221
BmrFI	CCNGG	4 cut(s)	1044, 1143, 1224, 1225
BmsI	GCATC	2 cut(s)	415, 550
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	3 cut(s)	1143, 1224, 1225
Bsa29I	ATCGAT	1 cut(s)	867
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	1223
BsaWI	WCCGGW	5 cut(s)	118, 545, 973, 1063, 1213
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	1190, 1216
Bse1I	ACTGG	7 cut(s)	69, 215, 220, 244, 453, 820, 902
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	4 cut(s)	118, 545, 973, 1063
BseBI	CCWGG	1 cut(s)	1044
BseCI	ATCGAT	1 cut(s)	867
BseDI	CCNNGG	1 cut(s)	1223
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	1190, 1216
BseMII	CTCAG	3 cut(s)	598, 687, 1312
BseNI	ACTGG	7 cut(s)	69, 215, 220, 244, 453, 820, 902
BseSI	GKGCMC	1 cut(s)	1224
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	2 cut(s)	186, 191
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	3 cut(s)	285, 1004, 1322
BshNI	GGYRCC	1 cut(s)	1219
BshVI	ATCGAT	1 cut(s)	867
BsiHKAI	GWGCWC	2 cut(s)	89, 1345
BsiHKCI	CYCGRG	4 cut(s)	295, 512, 1223, 1338
BsiSI	CCGG	8 cut(s)	119, 546, 974, 1064, 1142, 1202, 1214, 1224
BslFI	GGGAC	5 cut(s)	18, 322, 580, 1000, 1165
BslI	CCNNNNNNNGG	2 cut(s)	1190, 1216
BsmFI	GGGAC	5 cut(s)	18, 322, 580, 1000, 1165
BsmI	GAATGC	2 cut(s)	759, 1292
BsnI	GGCC	3 cut(s)	285, 1004, 1322
BsoBI	CYCGRG	4 cut(s)	295, 512, 1223, 1338
Bsp1286I	GDGCHC	3 cut(s)	89, 1224, 1345
Bsp13I	TCCGGA	4 cut(s)	118, 545, 973, 1063
Bsp143I	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
BspACI	CCGC	1 cut(s)	1261
BspANI	GGCC	3 cut(s)	285, 1004, 1322
BspCNI	CTCAG	3 cut(s)	597, 686, 1311
BspDI	ATCGAT	1 cut(s)	867
BspEI	TCCGGA	4 cut(s)	118, 545, 973, 1063
BspLI	GGNNCC	3 cut(s)	900, 972, 1221
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	3 cut(s)	110, 758, 1193
BspT107I	GGYRCC	1 cut(s)	1219
BspTI	CTTAAG	1 cut(s)	44
BsrI	ACTGG	7 cut(s)	69, 215, 220, 244, 453, 820, 902
BssECI	CCNNGG	1 cut(s)	1223
BssMI	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
Bst2UI	CCWGG	1 cut(s)	1044
Bst6I	CTCTTC	1 cut(s)	1242
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	4 cut(s)	308, 372, 499, 1207
BstDEI	CTNAG	5 cut(s)	584, 673, 1006, 1298, 1371
BstENI	CCTNNNNNAGG	1 cut(s)	1188
BstKTI	GATC	6 cut(s)	43, 112, 118, 657, 766, 1201
BstMBI	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 634
BstNI	CCWGG	1 cut(s)	1044
BstSCI	CCNGG	4 cut(s)	1042, 1141, 1222, 1223
BstSLI	GKGCMC	1 cut(s)	1224
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
Bsu15I	ATCGAT	1 cut(s)	867
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	3 cut(s)	285, 1004, 1322
BsuTUI	ATCGAT	1 cut(s)	867
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	3 cut(s)	365, 813, 909
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	4 cut(s)	308, 372, 499, 1207
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	1066, 1321
Cfr9I	CCCGGG	1 cut(s)	1223
ClaI	ATCGAT	1 cut(s)	867
Csp6I	GTAC	1 cut(s)	884
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	4 cut(s)	136, 718, 923, 962
CviQI	GTAC	1 cut(s)	884
DdeI	CTNAG	5 cut(s)	584, 673, 1006, 1298, 1371
DpnI	GATC	6 cut(s)	42, 111, 117, 656, 765, 1200
DpnII	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
DraI	TTTAAA	1 cut(s)	999
Eam1104I	CTCTTC	1 cut(s)	1242
EarI	CTCTTC	1 cut(s)	1242
EciI	GGCGGA	1 cut(s)	1276
Ecl136II	GAGCTC	1 cut(s)	1343
Eco147I	AGGCCT	1 cut(s)	1004
Eco24I	GRGCYC	1 cut(s)	1345
Eco32I	GATATC	2 cut(s)	471, 1130
Eco47I	GGWCC	1 cut(s)	1066
Eco53kI	GAGCTC	1 cut(s)	1343
Eco57I	CTGAAG	1 cut(s)	820
Eco88I	CYCGRG	4 cut(s)	295, 512, 1223, 1338
EcoICRI	GAGCTC	1 cut(s)	1343
EcoNI	CCTNNNNNAGG	1 cut(s)	1188
EcoRII	CCWGG	1 cut(s)	1042
EcoRV	GATATC	2 cut(s)	471, 1130
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	1345
FaeI	CATG	4 cut(s)	139, 721, 926, 965
FaqI	GGGAC	5 cut(s)	18, 322, 580, 1000, 1165
FatI	CATG	4 cut(s)	135, 717, 922, 961
Fnu4HI	GCNGC	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	1345
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	3 cut(s)	168, 198, 630
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	2 cut(s)	190, 195
HaeIII	GGCC	3 cut(s)	285, 1004, 1322
HapII	CCGG	8 cut(s)	119, 546, 974, 1064, 1142, 1202, 1214, 1224
Hin1II	CATG	4 cut(s)	139, 721, 926, 965
HindIII	AAGCTT	4 cut(s)	129, 308, 832, 1368
HinfI	GANTC	5 cut(s)	219, 864, 940, 1072, 1178
HpaII	CCGG	8 cut(s)	119, 546, 974, 1064, 1142, 1202, 1214, 1224
HphI	GGTGA	2 cut(s)	214, 416
Hpy188I	TCNGA	2 cut(s)	659, 1347
HpyAV	CCTTC	4 cut(s)	1070, 1220, 1222, 1232
HpyCH4V	TGCA	9 cut(s)	56, 306, 374, 428, 563, 757, 781, 1292, 1360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 634
HpyF3I	CTNAG	5 cut(s)	584, 673, 1006, 1298, 1371
Hsp92II	CATG	4 cut(s)	139, 721, 926, 965
Kpn2I	TCCGGA	4 cut(s)	118, 545, 973, 1063
Kzo9I	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
LmnI	GCTCC	3 cut(s)	536, 1145, 1337
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	415, 550
MaeI	CTAG	3 cut(s)	168, 198, 630
MaeIII	GTNAC	4 cut(s)	811, 839, 1034, 1111
MalI	GATC	6 cut(s)	42, 111, 117, 656, 765, 1200
MboI	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
MboII	GAAGA	7 cut(s)	134, 311, 454, 843, 950, 1256, 1259
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	3 cut(s)	89, 1224, 1345
MlyI	GAGTC	2 cut(s)	1066, 1187
MmeI	TCCRAC	2 cut(s)	558, 841
MnlI	CCTC	8 cut(s)	697, 736, 889, 1184, 1243, 1249, 1307, 1347
Mph1103I	ATGCAT	1 cut(s)	430
MroI	TCCGGA	4 cut(s)	118, 545, 973, 1063
MroXI	GAANNNNTTC	1 cut(s)	1051
MseI	TTAA	5 cut(s)	45, 714, 732, 830, 998
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	8 cut(s)	119, 546, 974, 1064, 1142, 1202, 1214, 1224
MspR9I	CCNGG	4 cut(s)	1044, 1143, 1224, 1225
Mva1269I	GAATGC	2 cut(s)	759, 1292
MvaI	CCWGG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	2 cut(s)	183, 634
NciI	CCSGG	3 cut(s)	1143, 1224, 1225
NdeII	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
NlaIII	CATG	4 cut(s)	139, 721, 926, 965
NlaIV	GGNNCC	3 cut(s)	900, 972, 1221
NmuCI	GTSAC	3 cut(s)	811, 1034, 1111
NsiI	ATGCAT	1 cut(s)	430
PaeR7I	CTCGAG	2 cut(s)	512, 1338
PaqCI	CACCTGC	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	1004
PctI	GAATGC	2 cut(s)	759, 1292
PdmI	GAANNNNTTC	1 cut(s)	1051
PfeI	GAWTC	3 cut(s)	219, 864, 940
PfoI	TCCNGGA	2 cut(s)	1042, 1141
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	1066, 1186
PpsI	GAGTC	2 cut(s)	1066, 1186
Psp124BI	GAGCTC	1 cut(s)	1345
Psp6I	CCWGG	1 cut(s)	1042
PspFI	CCCAGC	2 cut(s)	186, 191
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	3 cut(s)	900, 972, 1221
PspPI	GGNCC	2 cut(s)	1066, 1321
PspXI	VCTCGAGB	1 cut(s)	1338
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	1 cut(s)	885
RsaNI	GTAC	1 cut(s)	884
SacI	GAGCTC	1 cut(s)	1345
SaqAI	TTAA	5 cut(s)	45, 714, 732, 830, 998
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	6 cut(s)	40, 109, 115, 654, 763, 1198
Sau96I	GGNCC	2 cut(s)	1066, 1321
SchI	GAGTC	2 cut(s)	1066, 1187
ScrFI	CCNGG	4 cut(s)	1044, 1143, 1224, 1225
SduI	GDGCHC	3 cut(s)	89, 1224, 1345
SfaNI	GCATC	2 cut(s)	415, 550
Sfr274I	CTCGAG	2 cut(s)	512, 1338
SinI	GGWCC	1 cut(s)	1066
SlaI	CTCGAG	2 cut(s)	512, 1338
SmaI	CCCGGG	1 cut(s)	1225
SmlI	CTYRAG	4 cut(s)	44, 88, 512, 1338
SmoI	CTYRAG	4 cut(s)	44, 88, 512, 1338
SseBI	AGGCCT	1 cut(s)	1004
SsiI	CCGC	1 cut(s)	1261
SspMI	CTAG	3 cut(s)	168, 198, 630
SstI	GAGCTC	1 cut(s)	1345
StuI	AGGCCT	1 cut(s)	1004
StyD4I	CCNGG	4 cut(s)	1042, 1141, 1222, 1223
TaqI	TCGA	4 cut(s)	254, 513, 867, 1339
TatI	WGTACW	1 cut(s)	883
TfiI	GAWTC	3 cut(s)	219, 864, 940
Tru1I	TTAA	5 cut(s)	45, 714, 732, 830, 998
Tru9I	TTAA	5 cut(s)	45, 714, 732, 830, 998
TscAI	CASTG	3 cut(s)	372, 820, 909
TseFI	GTSAC	3 cut(s)	811, 1034, 1111
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	3 cut(s)	811, 1034, 1111
TspDTI	ATGAA	4 cut(s)	287, 624, 685, 950
TspMI	CCCGGG	1 cut(s)	1223
TspRI	CASTG	3 cut(s)	372, 820, 909
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	1066
XagI	CCTNNNNNAGG	1 cut(s)	1188
XapI	RAATTY	6 cut(s)	143, 408, 611, 683, 727, 1165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XhoI	CTCGAG	2 cut(s)	512, 1338
XmaI	CCCGGG	1 cut(s)	1223
XmnI	GAANNNNTTC	1 cut(s)	1051
XspI	CTAG	3 cut(s)	168, 198, 630
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.