Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016622

Physical Location & Seq

Genomic Coordinates Forward (+)

54040 .. 55268

Gene Structure 1229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGACACAAATGGGCTTCAGGGTTTTTACGTTTTAGTGATCTTAAGTTAGCTGCACAGCTACTGGTTTTGTTAGTGCTTCTATGCTCAAATCTTTCTCAAAGTCTTGATCCTGATCCGGAAGATAAAGCTTCCATGTTGAAATTTAGGTCAGGGGTTCAAGACCCTAGCCAGAGCTTGTCAAGCTGGGCTGGGTCTAGTTGTGCCAACTGGACTGGAATCACCTGCCAGAACCAGACTGGTAGAGTGGTTTCGATTGACATGACCAATATGAACTTGTCAGGCCAAATTGACCCCAGTTTGTGCAAGCTTCCATTTCTTCAAGATTTGGCTTTGCACTCTGAGCTTCTCAGGACTCTACATCTTGGTCACAATAGGTTTCGGGGTGTGGTGCCTGATACATTCATGAGGCTCGGGCAGTTGAAAGAACTAGTTTTGAATGGTAATAATGATTTGGGAGGTGTTATTCCTTGGTGGGTTGGTAATTTCTCAGCACAGTTGGAAAAGCTAGATATGGGTTTCAATTCATTTCATGGGGAGATTCCTCAAAGCTTGTTGTACTTGAAATCTCTCAAGTATTTGGATCTTGGGAACAATAATTTATCTGGCAGTCTTAGTGATTTTCACCGGTCTTTGGTGTTTCTCAATCTTGGATCGAACCAGTTTTTGGGTACTTTACCTTGTTTCTCTACTTGTGAGCAGTCTCTTAGAGTTTTGAATCTAGCTAACAATTCTGTGGTCGGAGGCATACCTACATGTATTGCTTCACTTCAAGCTTTGCAACATCTGAACCTTTCATCCAATCAATTGACTTACGAGATGTCTCCAAGACTTGTGTTTTCAGAGAAGCTTCTTCTCTTGGACGTGAGTAAAAATGAGTTGTCTGGTCCTCTTCCGAGCAAGGTTGCAGAGACAACGGATAAATCTGGGCTTGTTCTTCTTGATTTGTCTCACAATCGTTTCTCTGGTGAAATCCCATTGAAGATTACAGAACTGAATAGCCTGCAGGCATTGTTTCTATCGCACAATCTTCTTGTTGGGGAAATTCCCGCGCGGATTGGCAACCTAACCTATCTACAAGTGATTGATCTCTCACACAACTCATTATCAAGTGTAACTCAAATCTCCATTAAAGTATGGGATTCTTTCCCACCTATTATGATGCAAAGTGATGTGATACATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0012505 GO:0016020 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

396

Amino Acids

43.38

Weight (kDa)

6.11

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 76	8.5e-09	Leucine rich repeat N-terminal domain
LRR_8	PF13855	115 - 150	9.5e-06	Leucine rich repeat
LRR_4	PF12799	234 - 271	9.4e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65380
fragaria_vesca	FvH4_6g00680
prunus_persica	Prupe.6G359800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448121
rosa_laevigata	RLG00000025945 RLG00000026021
rosa_multiflora	Rmu_sc0005969.1_g000028
rosa_roxburghii	Rroxscaffold_6G00426250
rosa_rugosa	Rorug02G0608300
rosa_samantha	Rh3BG007600 Rh3CG007600 Rh3DG008100 Rh5DG014100
rosa_wichuraiana	Rw3G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccII	CGCG	2 cut(s)	1052, 1054
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	2 cut(s)	1050, 1054
AclWI	GGATC	4 cut(s)	104, 110, 591, 661
AcsI	RAATTY	2 cut(s)	143, 1044
AfaI	GTAC	2 cut(s)	560, 673
AfiI	CCNNNNNNNGG	2 cut(s)	634, 667
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	755
AgeI	ACCGGT	1 cut(s)	627
AhlI	ACTAGT	1 cut(s)	430
AjiI	CACGTC	1 cut(s)	865
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	782, 814
Alw26I	GTCTC	4 cut(s)	708, 828, 905, 954
AlwI	GGATC	4 cut(s)	104, 110, 591, 661
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	143, 1044
AsiGI	ACCGGT	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	1054
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	3 cut(s)	214, 617, 980
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	887
BanI	GGYRCC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	40
BcoDI	GTCTC	4 cut(s)	708, 828, 905, 954
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	5 cut(s)	168, 198, 431, 509, 722
BfmI	CTRYAG	1 cut(s)	1004
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	887
BmeT110I	CYCGRG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	1152
BmuI	ACTGGG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	557
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	2 cut(s)	118, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	634, 667
Bse118I	RCCGGY	1 cut(s)	627
Bse1I	ACTGG	6 cut(s)	69, 215, 220, 244, 297, 661
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	797
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	634, 667
BseMII	CTCAG	3 cut(s)	333, 364, 504
BseNI	ACTGG	6 cut(s)	69, 215, 220, 244, 297, 661
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	2 cut(s)	186, 191
BsgI	GTGCAG	1 cut(s)	39
Bsh1236I	CGCG	2 cut(s)	1052, 1054
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	391
BshTI	ACCGGT	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	119, 628
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	634, 667
BsmAI	GTCTC	4 cut(s)	708, 828, 905, 954
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	413
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
BspACI	CCGC	2 cut(s)	1050, 1054
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	3 cut(s)	334, 363, 503
BspEI	TCCGGA	1 cut(s)	118
BspFNI	CGCG	2 cut(s)	1052, 1054
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	1 cut(s)	1008
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	4 cut(s)	104, 110, 591, 661
BspT107I	GGYRCC	1 cut(s)	391
BspTI	CTTAAG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	627
BsrI	ACTGG	6 cut(s)	69, 215, 220, 244, 297, 661
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
BssT1I	CCWWGG	1 cut(s)	470
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	897
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	308, 1004, 1008
BstDEI	CTNAG	5 cut(s)	342, 350, 490, 614, 707
BstF5I	GGATG	1 cut(s)	797
BstFNI	CGCG	2 cut(s)	1052, 1054
BstHHI	GCGC	1 cut(s)	1054
BstKTI	GATC	6 cut(s)	43, 112, 118, 586, 656, 1090
BstMAI	GTCTC	4 cut(s)	708, 828, 905, 954
BstMBI	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 343
BstNSI	RCATGY	1 cut(s)	759
BstSFI	CTRYAG	1 cut(s)	1004
BstUI	CGCG	2 cut(s)	1052, 1054
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	865
BtsCI	GGATG	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	3 cut(s)	308, 1004, 1008
CaiI	CAGNNNCTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	1 cut(s)	1054
Cfr10I	RCCGGY	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	887
Csp6I	GTAC	2 cut(s)	559, 672
CspAI	ACCGGT	1 cut(s)	627
CviAII	CATG	6 cut(s)	136, 262, 406, 533, 756, 1181
CviQI	GTAC	2 cut(s)	559, 672
DdeI	CTNAG	5 cut(s)	342, 350, 490, 614, 707
DpnI	GATC	6 cut(s)	42, 111, 117, 585, 655, 1089
DpnII	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
Eco130I	CCWWGG	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	887
Eco88I	CYCGRG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	6 cut(s)	139, 265, 409, 536, 759, 1184
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	6 cut(s)	135, 261, 405, 532, 755, 1180
FauI	CCCGC	1 cut(s)	1057
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	784
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	5 cut(s)	168, 198, 431, 509, 722
GlaI	GCGC	1 cut(s)	1053
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	2 cut(s)	190, 195
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	119, 628
HhaI	GCGC	1 cut(s)	1054
Hin1II	CATG	6 cut(s)	139, 265, 409, 536, 759, 1184
Hin6I	GCGC	1 cut(s)	1052
HinP1I	GCGC	1 cut(s)	1052
HindIII	AAGCTT	5 cut(s)	129, 308, 550, 774, 848
HinfI	GANTC	5 cut(s)	219, 355, 541, 718, 1142
HpaII	CCGG	2 cut(s)	119, 628
HphI	GGTGA	3 cut(s)	214, 617, 980
Hpy188I	TCNGA	5 cut(s)	343, 743, 789, 844, 897
Hpy188III	TCNNGA	8 cut(s)	107, 113, 119, 161, 323, 352, 406, 941
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	2 cut(s)	31, 864
HpyCH4V	TGCA	7 cut(s)	56, 306, 337, 781, 908, 1006, 1165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 343
HpyF3I	CTNAG	5 cut(s)	342, 350, 490, 614, 707
HpySE526I	ACGT	2 cut(s)	31, 864
Hsp92II	CATG	6 cut(s)	139, 265, 409, 536, 759, 1184
HspAI	GCGC	1 cut(s)	1052
Kpn2I	TCCGGA	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	1152
MaeI	CTAG	5 cut(s)	168, 198, 431, 509, 722
MaeII	ACGT	2 cut(s)	31, 864
MaeIII	GTNAC	2 cut(s)	368, 1114
MalI	GATC	6 cut(s)	42, 111, 117, 585, 655, 1089
MboI	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
MboII	GAAGA	7 cut(s)	134, 311, 845, 884, 929, 994, 1022
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	1 cut(s)	583
MluCI	AATT	8 cut(s)	143, 288, 484, 523, 598, 730, 806, 1044
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	2 cut(s)	480, 721
MnlI	CCTC	5 cut(s)	402, 452, 555, 737, 900
MroI	TCCGGA	1 cut(s)	118
MseI	TTAA	2 cut(s)	45, 1131
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	2 cut(s)	119, 628
MunI	CAATTG	1 cut(s)	806
MvnI	CGCG	2 cut(s)	1052, 1054
MwoI	GCNNNNNNNGC	2 cut(s)	183, 343
NdeII	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
NlaIII	CATG	6 cut(s)	139, 265, 409, 536, 759, 1184
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	759
PagI	TCATGA	1 cut(s)	405
PaqCI	CACCTGC	1 cut(s)	233
PciI	ACATGT	1 cut(s)	755
PfeI	GAWTC	4 cut(s)	219, 541, 718, 1142
PflMI	CCANNNNNTGG	1 cut(s)	667
PinAI	ACCGGT	1 cut(s)	627
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PscI	ACATGT	1 cut(s)	755
PspFI	CCCAGC	2 cut(s)	186, 191
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	887
PstI	CTGCAG	1 cut(s)	1008
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	2 cut(s)	560, 673
RsaNI	GTAC	2 cut(s)	559, 672
SaqAI	TTAA	2 cut(s)	45, 1131
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	6 cut(s)	40, 109, 115, 583, 653, 1087
Sau96I	GGNCC	1 cut(s)	887
SbfI	CCTGCAGG	1 cut(s)	1008
SchI	GAGTC	1 cut(s)	349
SdaI	CCTGCAGG	1 cut(s)	1008
SfaNI	GCATC	1 cut(s)	1152
SfcI	CTRYAG	1 cut(s)	1004
SinI	GGWCC	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	44, 572
SmoI	CTYRAG	2 cut(s)	44, 572
SpeI	ACTAGT	1 cut(s)	430
Sse8387I	CCTGCAGG	1 cut(s)	1008
Sse9I	AATT	8 cut(s)	143, 288, 484, 523, 598, 730, 806, 1044
SsiI	CCGC	2 cut(s)	1050, 1054
SspMI	CTAG	5 cut(s)	168, 198, 431, 509, 722
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	2 cut(s)	34, 867
TaqI	TCGA	2 cut(s)	254, 656
TasI	AATT	8 cut(s)	143, 288, 484, 523, 598, 730, 806, 1044
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	4 cut(s)	219, 541, 718, 1142
Tru1I	TTAA	2 cut(s)	45, 1131
Tru9I	TTAA	2 cut(s)	45, 1131
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	5 cut(s)	287, 394, 516, 521, 786
TspGWI	ACGGA	1 cut(s)	932
Van91I	CCANNNNNTGG	1 cut(s)	667
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	887
XapI	RAATTY	2 cut(s)	143, 1044
XceI	RCATGY	1 cut(s)	759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	5 cut(s)	168, 198, 431, 509, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.