Rorug02G0608300

Leucine-rich repeat receptor-like protein CLAVATA2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010953
Physical Location & Seq
Reverse (-)
72525197 .. 72529919
4723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0608300.1

Sequence Viewer

Length: 1536 bp
ATGGCTTTCAAAGCTGCGCTCCTGTTACTTGTCACTAGTCTTTTGGTGACTTCAACGGTTTCTTTTGATTTTTTTTCTCAACACCCAGGGGAATGGTATATTGACGAAGGATTGGATAAAATTCTTCGTCGCATTAGTGGTGGTGCAATGTCTATGGCAGGACATGGTGATGATGGTAATGCTAATAAACATCCGCCGCCGCCTCCACCCCAGAAAACGCCATCACCGGCTCCAGTGAAGTCACCGCCACCAGCTCCGGCACCTCGAGCAAATGCACAGGCACCGGCCCCCCGAGGGAATGCACAGGCACCGGCCCCCCGAGGGAATGCACCGGCTCCAACACCACTAGCAAATGCACCGACTCCGGCACCCCGACCAAATGCACCAGCTCCCCCACCCCCACCCCCTGTACCTGCTCCACCCCCGAATAATTCTTCAGACGAAAACAACTCTTTGTTTGGCTTGATCCTTCTACCTGCTGCTCTCGCAGCCGCCGGCGCCGGGGCTGGTGCTGGCTTTAGTGGCGCCGCTGCCATAGCTAGCTTCGAAGCTGCAGCTGCCTCTGCAGCTGCAACAGCAGCTGCAAACATCCTCCAAGAACTTTTAAAACGTAACAAAAATGAAACACCGCCGGGTAAGAATCAGTGCACATGCTCGTCAGGTGGGAAGGAACCTCCTCCGGCTAGGACCTCCCCTACTCCACCATCTCCAATCAAACCTTCGACTCCACCAGCTCAAGGAAGGTCACCACCTTCGCCACCTCTGAAAAGGGCACCACCACCTCCCCCACCTTTAAAAAAGGCACCACCACCACCACCATCGGAGGAAGAAGATGGAGAGACACCAGCTCCTTCACCTCAAGATGACAACTTATTGGCTCCATCACCTTTTGTGGACGCACCCTCTCATTCACCTCTAGCAAACACACCTGCTCCTTCACCTCTGGCGAGTGCACCCGCTCCTGTTGGCGGCGCTGGCGCTGGCGGATACAAATCCAAAGCTGGAGCTGGAAAGACCATCCTTGGCGGCGGTATTGGAAAAACCATCTCAGACATGGGTAGCCATGAGACCGGTGAAAATTTAAACACTAAGGTAATAACGCCCTACACGCGTCAGTGCAGGTGCCCTAAATCTCCGGCTATGACCTCCCCCATTCCACCATCTCCAATCAAACCCTCGACTCCACCAGCTCAAGGAAGGTCACCACCTTTGTCACCTCTGAAAAAGGCACCACCATCTCCCCCACCTTCAAAAAAGGCACCACCACCTCCACCAGCTCCAGCACCTCAAGATGACGATGATGTGGCACTAGCTCCCGCACCTCAAAATGACAAGGCTTCTGTTGCAGATTGCATAACGTTATGTGATCAGAGGTGTGCGCTTCACCGAAATAAGAAAGTGTGCACGGATGTATGTATGATTTGTTGTGACCGCTGCAACTGTGTTCCACCCGGACCTTCTGGCAGCAATAAGGAAACATGCGGCCCCTGCTACACTCAAATACTCATCCAAGAATACAAGTACAATTGTCCTTGA

Protein Analysis

511

Amino Acids

51.7

Weight (kDa)

8.85

Isoelectric Point (pI)

78.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 450 - 511 9.6e-15 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65320
fragaria_vesca FvH4_6g00690 FvH4_6g00690 FvH4_6g00690
malus_domestica MD04G1243500.v1.1 MD12G1259100.v1.1
prunus_persica Prupe.6G359700_v2.0.a1
pyrus_communis pycom12g23760
rosa_chinensis RchiOBHm_Chr3g0448131
rosa_laevigata RLG00000025944 RLG00000026020
rosa_multiflora Rmu_sc0005969.1_g000029
rosa_roxburghii Rroxscaffold_6G00426260
rosa_rugosa Rorug02G0608300 Rorug02G0608400
rosa_samantha Rh3AG008200 Rh3BG007700 Rh3CG007700 Rh3DG008300
rosa_wichuraiana Rw3G000640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 937, 1110
Acc36I ACCTGC 4 cut(s) 421, 484, 937, 1110
AccBSI CCGCTC 1 cut(s) 959
AccII CGCG 1 cut(s) 1111
AclI AACGTT 1 cut(s) 1358
AclWI GGATC 1 cut(s) 460
AcsI RAATTY 2 cut(s) 120, 1078
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 2 cut(s) 498, 525
AfaI GTAC 2 cut(s) 411, 1523
AfiI CCNNNNNNNGG 6 cut(s) 294, 321, 501, 737, 968, 1193
AflIII ACRYGT 1 cut(s) 1109
AgeI ACCGGT 1 cut(s) 1070
AgsI TTSAA 3 cut(s) 10, 54, 1251
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 703, 735
Alw21I GWGCWC 3 cut(s) 650, 955, 1406
Alw26I GTCTC 2 cut(s) 833, 1061
Alw44I GTGCAC 3 cut(s) 646, 951, 1402
AlwI GGATC 1 cut(s) 460
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 3 cut(s) 264, 291, 318
AoxI GGCC 3 cut(s) 285, 312, 1483
ApaLI GTGCAC 3 cut(s) 646, 951, 1402
ApoI RAATTY 2 cut(s) 120, 1078
AsiGI ACCGGT 1 cut(s) 1070
AspLEI GCGC 6 cut(s) 19, 500, 527, 974, 980, 1381
AspS9I GGNCC 5 cut(s) 286, 313, 687, 1454, 1484
AsuC2I CCSGG 3 cut(s) 502, 633, 1452
AsuII TTCGAA 1 cut(s) 546
AsuNHI GCTAGC 1 cut(s) 539
AvaI CYCGRG 3 cut(s) 264, 291, 318
AvaII GGWCC 2 cut(s) 687, 1454
BaeGI GKGCMC 5 cut(s) 650, 775, 955, 1127, 1406
Bbv12I GWGCWC 3 cut(s) 650, 955, 1406
BciT130I CCWGG 1 cut(s) 87
BciVI GTATCC 1 cut(s) 980
BclI TGATCA 1 cut(s) 1366
BcnI CCSGG 3 cut(s) 502, 633, 1452
BcoDI GTCTC 2 cut(s) 833, 1061
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 6 cut(s) 36, 347, 540, 684, 917, 1310
BfmI CTRYAG 2 cut(s) 552, 564
BfoI RGCGCY 4 cut(s) 501, 528, 975, 981
BfuAI ACCTGC 4 cut(s) 421, 484, 937, 1110
BfuI GTATCC 1 cut(s) 980
Bme1390I CCNGG 4 cut(s) 87, 502, 633, 1452
Bme18I GGWCC 2 cut(s) 687, 1454
BmeT110I CYCGRG 3 cut(s) 264, 291, 318
BmgT120I GGNCC 5 cut(s) 286, 313, 687, 1454, 1484
BmrFI CCNGG 4 cut(s) 87, 502, 633, 1452
BmtI GCTAGC 1 cut(s) 543
BpmI CTGGAG 3 cut(s) 216, 1023, 1263
Bpu14I TTCGAA 1 cut(s) 546
BpuEI CTTGAG 4 cut(s) 720, 843, 1176, 1272
BpuMI CCSGG 3 cut(s) 502, 633, 1452
BsaBI GATNNNNATC 1 cut(s) 991
BsaHI GRCGYC 2 cut(s) 498, 525
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 6 cut(s) 85, 86, 292, 319, 501, 1021
BsaWI WCCGGW 1 cut(s) 1070
BsaXI ACNNNNNCTCC 4 cut(s) 832, 862, 916, 946
Bsc4I CCNNNNNNNGG 6 cut(s) 294, 321, 501, 737, 968, 1193
Bse118I RCCGGY 6 cut(s) 226, 283, 310, 331, 494, 1070
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 991
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 6 cut(s) 85, 86, 292, 319, 501, 1021
BseGI GGATG 5 cut(s) 190, 588, 1017, 1414, 1506
BseJI GATNNNNATC 1 cut(s) 991
BseLI CCNNNNNNNGG 6 cut(s) 294, 321, 501, 737, 968, 1193
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 1062
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 666
BseSI GKGCMC 5 cut(s) 650, 775, 955, 1127, 1406
BsgI GTGCAG 1 cut(s) 1138
Bsh1236I CGCG 1 cut(s) 1111
BshFI GGCC 3 cut(s) 287, 314, 1485
BshTI ACCGGT 1 cut(s) 1070
BsiHKAI GWGCWC 3 cut(s) 650, 955, 1406
BsiHKCI CYCGRG 3 cut(s) 264, 291, 318
BslI CCNNNNNNNGG 6 cut(s) 294, 321, 501, 737, 968, 1193
BsmAI GTCTC 2 cut(s) 833, 1061
BsmI GAATGC 2 cut(s) 304, 331
BsnI GGCC 3 cut(s) 287, 314, 1485
Bso31I GGTCTC 1 cut(s) 1061
BsoBI CYCGRG 3 cut(s) 264, 291, 318
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 5 cut(s) 650, 775, 955, 1127, 1406
Bsp143I GATC 2 cut(s) 465, 1366
BspANI GGCC 3 cut(s) 287, 314, 1485
BspCNI CTCAG 1 cut(s) 1061
BspFNI CGCG 1 cut(s) 1111
BspMAI CTGCAG 2 cut(s) 556, 568
BspMI ACCTGC 4 cut(s) 421, 484, 937, 1110
BspOI GCTAGC 1 cut(s) 543
BspPI GGATC 1 cut(s) 460
BspT104I TTCGAA 1 cut(s) 546
BspTNI GGTCTC 1 cut(s) 1061
BsrBI CCGCTC 1 cut(s) 959
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 6 cut(s) 226, 283, 310, 331, 494, 1070
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 6 cut(s) 226, 283, 310, 331, 494, 1070
BssECI CCNNGG 6 cut(s) 85, 86, 292, 319, 501, 1021
BssMI GATC 2 cut(s) 465, 1366
BssNI GRCGYC 2 cut(s) 498, 525
BssT1I CCWWGG 1 cut(s) 1021
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 58, 1442
BstACI GRCGYC 2 cut(s) 498, 525
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 5 cut(s) 496, 514, 541, 976, 982
BstDEI CTNAG 2 cut(s) 1048, 1089
BstEII GGTNACC 2 cut(s) 744, 1200
BstF5I GGATG 5 cut(s) 190, 588, 1017, 1414, 1506
BstFNI CGCG 1 cut(s) 1111
BstH2I RGCGCY 4 cut(s) 501, 528, 975, 981
BstHHI GCGC 6 cut(s) 19, 500, 527, 974, 980, 1381
BstKTI GATC 2 cut(s) 468, 1369
BstMAI GTCTC 2 cut(s) 833, 1061
BstMBI GATC 2 cut(s) 465, 1366
BstNI CCWGG 1 cut(s) 87
BstNSI RCATGY 2 cut(s) 654, 1482
BstPI GGTNACC 2 cut(s) 744, 1200
BstSCI CCNGG 4 cut(s) 85, 500, 631, 1450
BstSFI CTRYAG 2 cut(s) 552, 564
BstSLI GKGCMC 5 cut(s) 650, 775, 955, 1127, 1406
BstUI CGCG 1 cut(s) 1111
BstXI CCANNNNNNTGG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 980
BsuRI GGCC 3 cut(s) 287, 314, 1485
BtsCI GGATG 5 cut(s) 190, 588, 1017, 1414, 1506
BtsIMutI CAGTG 3 cut(s) 240, 650, 1121
BveI ACCTGC 4 cut(s) 421, 484, 937, 1110
Cac8I GCNNGC 5 cut(s) 496, 514, 541, 976, 982
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 6 cut(s) 19, 500, 527, 974, 980, 1381
Cfr10I RCCGGY 6 cut(s) 226, 283, 310, 331, 494, 1070
Cfr13I GGNCC 5 cut(s) 286, 313, 687, 1454, 1484
CseI GACGC 2 cut(s) 905, 1100
Csp6I GTAC 2 cut(s) 410, 1522
CspAI ACCGGT 1 cut(s) 1070
CviAII CATG 5 cut(s) 164, 651, 1054, 1064, 1479
CviQI GTAC 2 cut(s) 410, 1522
DdeI CTNAG 2 cut(s) 1048, 1089
DinI GGCGCC 2 cut(s) 499, 526
DpnI GATC 2 cut(s) 467, 1368
DpnII GATC 2 cut(s) 465, 1366
DraI TTTAAA 3 cut(s) 606, 795, 1083
EciI GGCGGA 2 cut(s) 183, 999
Eco130I CCWWGG 1 cut(s) 1021
Eco31I GGTCTC 1 cut(s) 1061
Eco47I GGWCC 2 cut(s) 687, 1454
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 3 cut(s) 264, 291, 318
Eco91I GGTNACC 2 cut(s) 744, 1200
EcoO109I RGGNCCY 1 cut(s) 687
EcoO65I GGTNACC 2 cut(s) 744, 1200
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 1021
EgeI GGCGCC 2 cut(s) 499, 526
EheI GGCGCC 2 cut(s) 499, 526
ErhI CCWWGG 1 cut(s) 1021
FaeI CATG 5 cut(s) 167, 654, 1057, 1067, 1482
FatI CATG 5 cut(s) 163, 650, 1053, 1063, 1478
FauI CCCGC 2 cut(s) 964, 1324
FbaI TGATCA 1 cut(s) 1366
FokI GGATG 5 cut(s) 177, 575, 1004, 1421, 1493
FspBI CTAG 6 cut(s) 36, 347, 540, 684, 917, 1310
GlaI GCGC 6 cut(s) 18, 499, 526, 973, 979, 1380
GsuI CTGGAG 3 cut(s) 216, 1023, 1263
HaeII RGCGCY 4 cut(s) 501, 528, 975, 981
HaeIII GGCC 3 cut(s) 287, 314, 1485
HgaI GACGC 2 cut(s) 905, 1100
HhaI GCGC 6 cut(s) 19, 500, 527, 974, 980, 1381
Hin1I GRCGYC 2 cut(s) 498, 525
Hin1II CATG 5 cut(s) 167, 654, 1057, 1067, 1482
Hin6I GCGC 6 cut(s) 17, 498, 525, 972, 978, 1379
HinP1I GCGC 6 cut(s) 17, 498, 525, 972, 978, 1379
HinfI GANTC 4 cut(s) 361, 640, 724, 1180
Hpy166II GTNNAC 4 cut(s) 648, 895, 953, 1404
Hpy188I TCNGA 6 cut(s) 439, 765, 823, 1051, 1221, 1371
Hpy188III TCNNGA 2 cut(s) 860, 1289
Hpy8I GTNNAC 4 cut(s) 648, 895, 953, 1404
Hpy99I CGWCG 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 58, 1442
HpyCH4IV ACGT 2 cut(s) 610, 1358
HpyF3I CTNAG 2 cut(s) 1048, 1089
HpySE526I ACGT 2 cut(s) 610, 1358
Hsp92I GRCGYC 2 cut(s) 498, 525
Hsp92II CATG 5 cut(s) 167, 654, 1057, 1067, 1482
HspAI GCGC 6 cut(s) 17, 498, 525, 972, 978, 1379
KasI GGCGCC 2 cut(s) 497, 524
KroI GCCGGC 1 cut(s) 494
KroNI GCCGGC 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 1366
Kzo9I GATC 2 cut(s) 465, 1366
MaeI CTAG 6 cut(s) 36, 347, 540, 684, 917, 1310
MaeII ACGT 2 cut(s) 610, 1358
MaeIII GTNAC 9 cut(s) 24, 31, 46, 240, 611, 744, 1200, 1212, 1427
MalI GATC 2 cut(s) 467, 1368
MbiI CCGCTC 1 cut(s) 959
MboI GATC 2 cut(s) 465, 1366
MboII GAAGA 4 cut(s) 116, 426, 839, 842
MfeI CAATTG 1 cut(s) 1525
MhlI GDGCHC 5 cut(s) 650, 775, 955, 1127, 1406
MluCI AATT 4 cut(s) 120, 430, 1078, 1525
MluI ACGCGT 1 cut(s) 1109
Mly113I GGCGCC 2 cut(s) 498, 525
MlyI GAGTC 3 cut(s) 355, 718, 1174
MmeI TCCRAC 1 cut(s) 362
MreI CGCCGGCG 1 cut(s) 494
MroNI GCCGGC 1 cut(s) 494
MseI TTAA 3 cut(s) 605, 794, 1082
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 5 cut(s) 530, 557, 569, 581, 1434
MspR9I CCNGG 4 cut(s) 87, 502, 633, 1452
MunI CAATTG 1 cut(s) 1525
Mva1269I GAATGC 2 cut(s) 304, 331
MvaI CCWGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 1111
NaeI GCCGGC 1 cut(s) 496
NarI GGCGCC 2 cut(s) 498, 525
NciI CCSGG 3 cut(s) 502, 633, 1452
NdeII GATC 2 cut(s) 465, 1366
NgoMIV GCCGGC 1 cut(s) 494
NheI GCTAGC 1 cut(s) 539
NlaIII CATG 5 cut(s) 167, 654, 1057, 1067, 1482
NmuCI GTSAC 7 cut(s) 31, 46, 240, 744, 1200, 1212, 1427
NspI RCATGY 2 cut(s) 654, 1482
NspV TTCGAA 1 cut(s) 546
PaeR7I CTCGAG 1 cut(s) 264
PaqCI CACCTGC 2 cut(s) 937, 1110
PasI CCCWGGG 1 cut(s) 86
PctI GAATGC 2 cut(s) 304, 331
PdiI GCCGGC 1 cut(s) 496
PfeI GAWTC 1 cut(s) 640
PinAI ACCGGT 1 cut(s) 1070
PleI GAGTC 3 cut(s) 355, 718, 1174
PluTI GGCGCC 2 cut(s) 501, 528
PpsI GAGTC 3 cut(s) 355, 718, 1174
PpuMI RGGWCCY 1 cut(s) 687
Psp1406I AACGTT 1 cut(s) 1358
Psp5II RGGWCCY 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 85
PspEI GGTNACC 2 cut(s) 744, 1200
PspGI CCWGG 1 cut(s) 85
PspPI GGNCC 5 cut(s) 286, 313, 687, 1454, 1484
PspPPI RGGWCCY 1 cut(s) 687
PspXI VCTCGAGB 1 cut(s) 264
PstI CTGCAG 2 cut(s) 556, 568
PstNI CAGNNNCTG 1 cut(s) 581
PvuII CAGCTG 3 cut(s) 557, 569, 581
RsaI GTAC 2 cut(s) 411, 1523
RsaNI GTAC 2 cut(s) 410, 1522
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 3 cut(s) 605, 794, 1082
Sau3AI GATC 2 cut(s) 465, 1366
Sau96I GGNCC 5 cut(s) 286, 313, 687, 1454, 1484
SchI GAGTC 3 cut(s) 355, 718, 1174
ScrFI CCNGG 4 cut(s) 87, 502, 633, 1452
SduI GDGCHC 5 cut(s) 650, 775, 955, 1127, 1406
SfcI CTRYAG 2 cut(s) 552, 564
SfoI GGCGCC 2 cut(s) 499, 526
Sfr274I CTCGAG 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 546
SgrAI CRCCGGYG 1 cut(s) 494
SinI GGWCC 2 cut(s) 687, 1454
SlaI CTCGAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 5 cut(s) 264, 735, 858, 1191, 1287
SmoI CTYRAG 5 cut(s) 264, 735, 858, 1191, 1287
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 4 cut(s) 120, 430, 1078, 1525
SspDI GGCGCC 2 cut(s) 497, 524
SspMI CTAG 6 cut(s) 36, 347, 540, 684, 917, 1310
StyD4I CCNGG 4 cut(s) 85, 500, 631, 1450
StyI CCWWGG 1 cut(s) 1021
TaaI ACNGT 2 cut(s) 58, 1442
TaiI ACGT 2 cut(s) 613, 1361
TaqI TCGA 4 cut(s) 265, 546, 722, 1178
TasI AATT 4 cut(s) 120, 430, 1078, 1525
TatI WGTACW 1 cut(s) 1521
TauI GCSGC 7 cut(s) 199, 202, 494, 530, 972, 1029, 1485
TfiI GAWTC 1 cut(s) 640
Tru1I TTAA 3 cut(s) 605, 794, 1082
Tru9I TTAA 3 cut(s) 605, 794, 1082
TscAI CASTG 3 cut(s) 240, 650, 1121
TseFI GTSAC 7 cut(s) 31, 46, 240, 744, 1200, 1212, 1427
Tsp45I GTSAC 7 cut(s) 31, 46, 240, 744, 1200, 1212, 1427
TspDTI ATGAA 1 cut(s) 636
TspGWI ACGGA 1 cut(s) 1421
TspRI CASTG 3 cut(s) 240, 650, 1121
VneI GTGCAC 3 cut(s) 646, 951, 1402
VpaK11BI GGWCC 2 cut(s) 687, 1454
XapI RAATTY 2 cut(s) 120, 1078
XceI RCATGY 2 cut(s) 654, 1482
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XhoI CTCGAG 1 cut(s) 264
XspI CTAG 6 cut(s) 36, 347, 540, 684, 917, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.