pycom12g23760

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0010953
Physical Location & Seq
Reverse (-)
24247810 .. 24249804
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g23760.2

Sequence Viewer

Length: 1221 bp
ATGGTGGAGCTGTGCGAGACGGAGACGATGGAGGCGGCCATAAGGGCAATCGGAGAGTCAACGGAATGCGGCATACCGGTGTGGAAGAAGAAACCGCTTGTGGGAATGGTCGAAAACAGTGAATTGCTGCAGCAGAGGTTCGTGGGAATCCTTAATTCCCTCGACATTGTTGCTTTCTTTGCTAAAAGCGAGTGCCTTGAGGATCATGACAAGGCTTTGAAGACTCCGGTGTCTGATGTCGTTGTTCCGAATAATTCTTTGCTCAAGCAGGTTGATCCTGCCACAAGGTTGATAGATGCGCTGGAGATGATGAAGCATGGTGTAAAGCGTCTTATTGTTCGAAAGAGTGTGGTATGGAAAGGCATGAGCAAACGTTTCTCTATTATCTATAATGGCAAATGGCTCAAGAACATGGATGCTAGTGGCAGCAGCAATAACCCTTCTACCAATCTCAATCGGCCTTCCTCATCTTCCACTAGCAGTACCTGTGACAAGTTTTGCTGTCTCTCAAGAGAAGATGTCATCCGTTTCCTGATTGGTTGCCTAGGTGCCCTAGCACCTCTTCCGCTCTCCTCTATCTCCTCTCTTGGAGCAATTAACCCAAACTACCAATTTGTTGAAGCCTCGGCTGCAGCCATTGAAGCCACTAAAAAGCTTCCTGACGACCCTAGTGCAGTTGCTGTTGTCGAACAGACACAGGATGATGAGTATAAGATCATCGGAGAGATCTCGGCCTCCAAACTATGGAAATGTGATTACTTATCAGCAGCATGGGCTTTAGCTAATCTCTCCGCTGGACAGTTTGTGATGGGAGTGGAGGATAATGCATCCTCAAGGTCAGAATACAATTTCTCTTTGCGTCCAGCTGCTGGCAATAATAATCAAGCTAATGGTGGCGGGTCAGCAAGGCCGAAGAAGTTTAGTAGCAGGAGTATAGGGTTCAATCCCGCGAGCCCAAGCATGGGAGTAAGCAGAAGCATGTATAGGGGCAGAAGTGCACCCTTGACCTGTAGGGTTACGAGTTCATTGGCGGCAGTGATGGCTCAGATGTTGTCTCACAGGGCAACTCATGTGTGGGTGACTGAGGATCACAGTGATGATATTGTAGTTGGAGTGGTGGGTTATGCAGATATTATGGCCGCTGTCACCAAACAACCAGCCCCTACAAACCCTGCACTTGGTCGGACGACTGAGGTTTCTGGTAATGATATTCACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

407

Amino Acids

43.78

Weight (kDa)

8.01

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65320
fragaria_vesca FvH4_6g00690 FvH4_6g00690 FvH4_6g00690
malus_domestica MD04G1243500.v1.1 MD12G1259100.v1.1
prunus_persica Prupe.6G359700_v2.0.a1
pyrus_communis pycom12g23760
rosa_chinensis RchiOBHm_Chr3g0448131
rosa_laevigata RLG00000025944 RLG00000026020
rosa_multiflora Rmu_sc0005969.1_g000029
rosa_roxburghii Rroxscaffold_6G00426260
rosa_rugosa Rorug02G0608300 Rorug02G0608400
rosa_samantha Rh3AG008200 Rh3BG007700 Rh3CG007700 Rh3DG008300
rosa_wichuraiana Rw3G000640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 548
AccB7I CCANNNNNTGG 2 cut(s) 744, 869
AccBSI CCGCTC 1 cut(s) 568
AccII CGCG 1 cut(s) 950
AciI CCGC 9 cut(s) 35, 69, 95, 566, 792, 897, 948, 1031, 1140
AclI AACGTT 1 cut(s) 373
AclWI GGATC 3 cut(s) 210, 269, 1095
AcoI YGGCCR 2 cut(s) 36, 1137
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 6 cut(s) 101, 744, 869, 961, 962, 1178
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 4 cut(s) 220, 620, 641, 943
AluBI AGCT 5 cut(s) 10, 655, 782, 866, 887
AluI AGCT 5 cut(s) 10, 655, 782, 866, 887
Alw21I GWGCWC 1 cut(s) 1000
Alw26I GTCTC 4 cut(s) 11, 17, 509, 1059
Alw44I GTGCAC 1 cut(s) 996
AlwI GGATC 3 cut(s) 210, 269, 1095
AlwNI CAGNNNCTG 3 cut(s) 486, 680, 869
AoxI GGCC 5 cut(s) 36, 458, 732, 908, 1137
ApaLI GTGCAC 1 cut(s) 996
ApeKI GCWGC 8 cut(s) 127, 130, 426, 429, 629, 632, 767, 866
AsiGI ACCGGT 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 544
AspLEI GCGC 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 1090, 1138, 1205
AsuII TTCGAA 1 cut(s) 340
AvrII CCTAGG 1 cut(s) 544
BaeGI GKGCMC 2 cut(s) 553, 1000
BanI GGYRCC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 956
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 1000
BbvI GCAGC 8 cut(s) 114, 142, 438, 441, 616, 644, 779, 853
BccI CCATC 3 cut(s) 22, 802, 1033
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 653, 687
BcoDI GTCTC 4 cut(s) 11, 17, 509, 1059
BfaI CTAG 5 cut(s) 420, 477, 545, 554, 669
BfmI CTRYAG 3 cut(s) 128, 630, 1009
BfuAI ACCTGC 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 726
BlnI CCTAGG 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 550
BmsI GCATC 3 cut(s) 286, 406, 836
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 5 cut(s) 218, 248, 389, 493, 817
BsaJI CCNNGG 2 cut(s) 544, 624
BsaWI WCCGGW 2 cut(s) 76, 226
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 744, 869, 961, 962, 1178
Bse118I RCCGGY 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 544, 624
BseGI GGATG 4 cut(s) 421, 522, 706, 827
BseLI CCNNNNNNNGG 6 cut(s) 101, 744, 869, 961, 962, 1178
BseMII CTCAG 3 cut(s) 1058, 1074, 1182
BseRI GAGGAG 2 cut(s) 562, 571
BseSI GKGCMC 2 cut(s) 553, 1000
BseXI GCAGC 8 cut(s) 114, 142, 438, 441, 616, 644, 779, 853
BsgI GTGCAG 2 cut(s) 693, 1158
Bsh1236I CGCG 1 cut(s) 950
BshFI GGCC 5 cut(s) 38, 460, 734, 910, 1139
BshNI GGYRCC 1 cut(s) 548
BshTI ACCGGT 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 1000
BsiSI CCGG 2 cut(s) 77, 227
BslI CCNNNNNNNGG 6 cut(s) 101, 744, 869, 961, 962, 1178
BsmAI GTCTC 4 cut(s) 11, 17, 509, 1059
BsmBI CGTCTC 2 cut(s) 11, 17
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 5 cut(s) 38, 460, 734, 910, 1139
Bsp119I TTCGAA 1 cut(s) 340
Bsp1286I GDGCHC 3 cut(s) 553, 956, 1000
Bsp143I GATC 5 cut(s) 202, 274, 714, 726, 1087
BspACI CCGC 9 cut(s) 35, 69, 95, 566, 792, 897, 948, 1031, 1140
BspANI GGCC 5 cut(s) 38, 460, 734, 910, 1139
BspCNI CTCAG 3 cut(s) 1057, 1075, 1183
BspFNI CGCG 1 cut(s) 950
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 550
BspMAI CTGCAG 2 cut(s) 132, 634
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 210, 269, 1095
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 544, 624
BssMI GATC 5 cut(s) 202, 274, 714, 726, 1087
BssT1I CCWWGG 1 cut(s) 544
Bst4CI ACNGT 4 cut(s) 119, 801, 1094, 1217
Bst6I CTCTTC 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 871, 952
BstDEI CTNAG 3 cut(s) 1044, 1083, 1191
BstF5I GGATG 4 cut(s) 421, 522, 706, 827
BstFNI CGCG 1 cut(s) 950
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 5 cut(s) 205, 277, 717, 729, 1090
BstMAI GTCTC 4 cut(s) 11, 17, 509, 1059
BstMBI GATC 5 cut(s) 202, 274, 714, 726, 1087
BstMWI GCNNNNNNNGC 6 cut(s) 44, 179, 629, 641, 773, 1040
BstNSI RCATGY 1 cut(s) 982
BstSFI CTRYAG 3 cut(s) 128, 630, 1009
BstSLI GKGCMC 2 cut(s) 553, 1000
BstUI CGCG 1 cut(s) 950
BstV1I GCAGC 8 cut(s) 114, 142, 438, 441, 616, 644, 779, 853
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BsuRI GGCC 5 cut(s) 38, 460, 734, 910, 1139
BtsCI GGATG 4 cut(s) 421, 522, 706, 827
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 3 cut(s) 124, 1041, 1099
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 871, 952
CaiI CAGNNNCTG 3 cut(s) 486, 680, 869
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 76
CseI GACGC 2 cut(s) 317, 848
Csp6I GTAC 1 cut(s) 483
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 8 cut(s) 206, 317, 364, 412, 771, 961, 979, 1070
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 3 cut(s) 1044, 1083, 1191
DpnI GATC 5 cut(s) 204, 276, 716, 728, 1089
DpnII GATC 5 cut(s) 202, 274, 714, 726, 1087
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 2 cut(s) 36, 1137
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 956
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 2 cut(s) 11, 17
FaeI CATG 8 cut(s) 209, 320, 367, 415, 774, 964, 982, 1073
FatI CATG 8 cut(s) 205, 316, 363, 411, 770, 960, 978, 1069
FauI CCCGC 2 cut(s) 890, 955
FokI GGATG 4 cut(s) 428, 509, 713, 814
FriOI GRGCYC 1 cut(s) 956
FspBI CTAG 5 cut(s) 420, 477, 545, 554, 669
GlaI GCGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 5 cut(s) 38, 460, 734, 910, 1139
HapII CCGG 2 cut(s) 77, 227
HgaI GACGC 2 cut(s) 317, 848
HhaI GCGC 1 cut(s) 301
Hin1II CATG 8 cut(s) 209, 320, 367, 415, 774, 964, 982, 1073
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 3 cut(s) 56, 147, 223
HpaII CCGG 2 cut(s) 77, 227
HphI GGTGA 3 cut(s) 1090, 1138, 1205
Hpy166II GTNNAC 2 cut(s) 60, 998
Hpy188I TCNGA 7 cut(s) 53, 235, 249, 722, 841, 1047, 1185
Hpy188III TCNNGA 5 cut(s) 206, 406, 510, 532, 659
Hpy8I GTNNAC 2 cut(s) 60, 998
HpyAV CCTTC 2 cut(s) 450, 471
HpyCH4III ACNGT 4 cut(s) 119, 801, 1094, 1217
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 7 cut(s) 130, 632, 674, 827, 998, 1127, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 179, 629, 641, 773, 1040
HpyF3I CTNAG 3 cut(s) 1044, 1083, 1191
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 8 cut(s) 209, 320, 367, 415, 774, 964, 982, 1073
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 5 cut(s) 202, 274, 714, 726, 1087
LmnI GCTCC 2 cut(s) 7, 590
Lsp1109I GCAGC 8 cut(s) 114, 142, 438, 441, 616, 644, 779, 853
LweI GCATC 3 cut(s) 286, 406, 836
MaeI CTAG 5 cut(s) 420, 477, 545, 554, 669
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 4 cut(s) 488, 1015, 1078, 1144
MalI GATC 5 cut(s) 204, 276, 716, 728, 1089
MbiI CCGCTC 1 cut(s) 568
MboI GATC 5 cut(s) 202, 274, 714, 726, 1087
MboII GAAGA 7 cut(s) 97, 100, 232, 462, 527, 554, 925
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 3 cut(s) 553, 956, 1000
MluCI AATT 6 cut(s) 122, 154, 253, 594, 611, 847
MlyI GAGTC 2 cut(s) 65, 217
MmeI TCCRAC 2 cut(s) 1090, 1163
Mph1103I ATGCAT 1 cut(s) 829
MseI TTAA 2 cut(s) 153, 597
MslI CAYNNNNRTG 2 cut(s) 77, 1095
MspA1I CMGCKG 3 cut(s) 794, 866, 1142
MspI CCGG 2 cut(s) 77, 227
Mva1269I GAATGC 1 cut(s) 71
MvnI CGCG 1 cut(s) 950
MwoI GCNNNNNNNGC 6 cut(s) 44, 179, 629, 641, 773, 1040
NdeII GATC 5 cut(s) 202, 274, 714, 726, 1087
NlaIII CATG 8 cut(s) 209, 320, 367, 415, 774, 964, 982, 1073
NlaIV GGNNCC 1 cut(s) 550
NmeAIII GCCGAG 2 cut(s) 605, 710
NmuCI GTSAC 3 cut(s) 488, 1078, 1144
NsiI ATGCAT 1 cut(s) 829
NspI RCATGY 1 cut(s) 982
NspV TTCGAA 1 cut(s) 340
PagI TCATGA 1 cut(s) 205
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 147
PflMI CCANNNNNTGG 2 cut(s) 744, 869
PinAI ACCGGT 1 cut(s) 76
PleI GAGTC 2 cut(s) 64, 217
PpsI GAGTC 2 cut(s) 64, 217
Psp1406I AACGTT 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 550
PstI CTGCAG 2 cut(s) 132, 634
PstNI CAGNNNCTG 3 cut(s) 486, 680, 869
PsuI RGATCY 1 cut(s) 726
PvuII CAGCTG 1 cut(s) 866
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 2 cut(s) 77, 1095
SaqAI TTAA 2 cut(s) 153, 597
Sau3AI GATC 5 cut(s) 202, 274, 714, 726, 1087
SchI GAGTC 2 cut(s) 65, 217
SduI GDGCHC 3 cut(s) 553, 956, 1000
SfaNI GCATC 3 cut(s) 286, 406, 836
SfcI CTRYAG 3 cut(s) 128, 630, 1009
SfuI TTCGAA 1 cut(s) 340
SmiMI CAYNNNNRTG 2 cut(s) 77, 1095
SmlI CTYRAG 5 cut(s) 197, 263, 404, 508, 832
SmoI CTYRAG 5 cut(s) 197, 263, 404, 508, 832
Sse9I AATT 6 cut(s) 122, 154, 253, 594, 611, 847
SsiI CCGC 9 cut(s) 35, 69, 95, 566, 792, 897, 948, 1031, 1140
SspMI CTAG 5 cut(s) 420, 477, 545, 554, 669
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 4 cut(s) 119, 801, 1094, 1217
TaiI ACGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 111, 162, 340, 687
TasI AATT 6 cut(s) 122, 154, 253, 594, 611, 847
TauI GCSGC 4 cut(s) 38, 72, 1034, 1142
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 2 cut(s) 153, 597
Tru9I TTAA 2 cut(s) 153, 597
TscAI CASTG 3 cut(s) 124, 1041, 1099
TseFI GTSAC 3 cut(s) 488, 1078, 1144
TseI GCWGC 8 cut(s) 127, 130, 426, 429, 629, 632, 767, 866
Tsp45I GTSAC 3 cut(s) 488, 1078, 1144
TspDTI ATGAA 2 cut(s) 326, 1014
TspGWI ACGGA 3 cut(s) 35, 77, 515
TspRI CASTG 3 cut(s) 124, 1041, 1099
Van91I CCANNNNNTGG 2 cut(s) 744, 869
VneI GTGCAC 1 cut(s) 996
XceI RCATGY 1 cut(s) 982
XmaJI CCTAGG 1 cut(s) 544
XspI CTAG 5 cut(s) 420, 477, 545, 554, 669
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.