Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010953

Physical Location & Seq

Genomic Coordinates Reverse (-)

32571184 .. 32572944

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1259100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTGTTGCTCCGAATAATTCTTTGCTCAAGCAGGTTGATCCTGCCACAAGTAATTTGTGGTGATTGGTTGGTAGATGCGCTGGAGATGATGAAGCATGGTGTAAAGCGTCTTATTGTTCGAAAGAGTGTGGTATGGAAAGGCATGAGCAAACGTTTCTCTATTATCTATAATGGCAAATGGCTCAAGAACATGGATGCTAGTGGCAGCAACAATAACCCTTCTGCCAATCCCAATCGGCCTTCCTCATCTTCCACTAGCAGTACCCTCGACAAGTTTTGCTGTCTCTCAAGAGAAGATGTCATCCGTTTCCTGATTGGTTGCCTAGGTGCCCTAGCACCTCTTCCGCTCTCCTCTATCTCCTCTCTTGGAGCAATTAACCCAAACTACCAATTTGTTGAAGCCTCGGCTGCAGCCATTGAAGCCACTAAAAAACTTCCTGACGACCCTAGTGCAATTGCTGTTGTCGAACAGACACAGGATGATGAGTATAAGATCATCGGAGAGATCTCTGCTTCCAAACTATGGAAATGTGATTACTTGTCAGCAGCATGGGCTTTAGCTAATCTCTCCGCTGGACAGTTTGTGATGGGAGTGGAGGATAATGTGTCCTCAAGGTCAGAATACAATTTCTCTTTGCGTCCAGCTGCTGGCAATAATAATCAAGCTAATGGTGGCGGGTCAGCAAGGCCGAAGAAGTTCAGTAGCAGGAGTATAGGGTTCAATCCAGCGAGCCCAAGCATGGGAGTGAGCAGAAGCATGTATAGGGGTAGAAGTGCACCCTTGACCTGTAGGGTTACGAGTTCATTGGCGGCAGTGATGGCTCAGATGTTGTCTCACAGGGCAACTCATGTGTGGGTGACTGAGGATCACAGTGATGATATTGTAGTTGGAGTGGTGGGTTATGCAGATATTATGGCCGCTGTCACTAAACAACCAGCCCCCGCAAACCCTCCACTTGGTCGGACGACTGAGGTTTCTGGTAACGATATTCACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

334

Amino Acids

35.87

Weight (kDa)

9.15

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65320
fragaria_vesca	FvH4_6g00690 FvH4_6g00690 FvH4_6g00690
malus_domestica	MD04G1243500.v1.1 MD12G1259100.v1.1
prunus_persica	Prupe.6G359700_v2.0.a1
pyrus_communis	pycom12g23760
rosa_chinensis	RchiOBHm_Chr3g0448131
rosa_laevigata	RLG00000025944 RLG00000026020
rosa_multiflora	Rmu_sc0005969.1_g000029
rosa_roxburghii	Rroxscaffold_6G00426260
rosa_rugosa	Rorug02G0608300 Rorug02G0608400
rosa_samantha	Rh3AG008200 Rh3BG007700 Rh3CG007700 Rh3DG008300
rosa_wichuraiana	Rw3G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	329
AccB7I	CCANNNNNTGG	2 cut(s)	525, 650
AccBSI	CCGCTC	1 cut(s)	349
AciI	CCGC	6 cut(s)	347, 573, 678, 812, 921, 945
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	2 cut(s)	34, 876
AcoI	YGGCCR	1 cut(s)	918
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	5 cut(s)	525, 650, 742, 743, 959
AgsI	TTSAA	3 cut(s)	401, 422, 724
AluBI	AGCT	3 cut(s)	563, 647, 668
AluI	AGCT	3 cut(s)	563, 647, 668
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	2 cut(s)	290, 840
Alw44I	GTGCAC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	34, 876
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	3 cut(s)	239, 689, 918
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	5 cut(s)	207, 410, 413, 548, 647
Asp700I	GAANNNNTTC	1 cut(s)	698
AspA2I	CCTAGG	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	3 cut(s)	74, 871, 986
AsuII	TTCGAA	1 cut(s)	121
AvrII	CCTAGG	1 cut(s)	325
BaeGI	GKGCMC	2 cut(s)	334, 781
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	5 cut(s)	219, 397, 425, 560, 634
BccI	CCATC	2 cut(s)	583, 814
BcgI	CGANNNNNNTGC	4 cut(s)	250, 284, 434, 468
BcoDI	GTCTC	2 cut(s)	290, 840
BfaI	CTAG	5 cut(s)	201, 258, 326, 335, 450
BfmI	CTRYAG	2 cut(s)	411, 790
BfuAI	ACCTGC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	7 cut(s)	208, 411, 414, 549, 648, 813, 921
BlnI	CCTAGG	1 cut(s)	325
BlsI	GCNGC	7 cut(s)	209, 412, 415, 550, 649, 814, 922
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	2 cut(s)	67, 187
BpmI	CTGGAG	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	121
BpuEI	CTTGAG	4 cut(s)	13, 170, 274, 598
BsaJI	CCNNGG	2 cut(s)	325, 405
Bsc4I	CCNNNNNNNGG	5 cut(s)	525, 650, 742, 743, 959
BseDI	CCNNGG	2 cut(s)	325, 405
BseGI	GGATG	3 cut(s)	202, 303, 487
BseLI	CCNNNNNNNGG	5 cut(s)	525, 650, 742, 743, 959
BseMII	CTCAG	3 cut(s)	839, 855, 963
BseRI	GAGGAG	2 cut(s)	343, 352
BseSI	GKGCMC	2 cut(s)	334, 781
BseXI	GCAGC	5 cut(s)	219, 397, 425, 560, 634
BshFI	GGCC	3 cut(s)	241, 691, 920
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	781
BslI	CCNNNNNNNGG	5 cut(s)	525, 650, 742, 743, 959
BsmAI	GTCTC	2 cut(s)	290, 840
BsnI	GGCC	3 cut(s)	241, 691, 920
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	334, 737, 781
Bsp143I	GATC	4 cut(s)	39, 495, 507, 868
BspACI	CCGC	6 cut(s)	347, 573, 678, 812, 921, 945
BspANI	GGCC	3 cut(s)	241, 691, 920
BspCNI	CTCAG	3 cut(s)	838, 856, 964
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	34, 876
BspT104I	TTCGAA	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	325, 405
BssMI	GATC	4 cut(s)	39, 495, 507, 868
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	3 cut(s)	582, 875, 998
Bst6I	CTCTTC	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	652, 733
BstDEI	CTNAG	3 cut(s)	825, 864, 972
BstF5I	GGATG	3 cut(s)	202, 303, 487
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	4 cut(s)	42, 498, 510, 871
BstMAI	GTCTC	2 cut(s)	290, 840
BstMBI	GATC	4 cut(s)	39, 495, 507, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 422, 554, 821
BstNSI	RCATGY	1 cut(s)	763
BstSFI	CTRYAG	2 cut(s)	411, 790
BstSLI	GKGCMC	2 cut(s)	334, 781
BstV1I	GCAGC	5 cut(s)	219, 397, 425, 560, 634
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	3 cut(s)	241, 691, 920
BtsCI	GGATG	3 cut(s)	202, 303, 487
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	2 cut(s)	822, 880
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	652, 733
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	2 cut(s)	98, 629
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	7 cut(s)	98, 145, 193, 552, 742, 760, 851
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	825, 864, 972
DpnI	GATC	4 cut(s)	41, 497, 509, 870
DpnII	GATC	4 cut(s)	39, 495, 507, 868
EaeI	YGGCCR	1 cut(s)	918
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	7 cut(s)	101, 148, 196, 555, 745, 763, 854
FatI	CATG	7 cut(s)	97, 144, 192, 551, 741, 759, 850
FauI	CCCGC	2 cut(s)	671, 952
Fnu4HI	GCNGC	7 cut(s)	208, 411, 414, 549, 648, 813, 921
FokI	GGATG	3 cut(s)	209, 290, 494
FriOI	GRGCYC	1 cut(s)	737
Fsp4HI	GCNGC	7 cut(s)	208, 411, 414, 549, 648, 813, 921
FspBI	CTAG	5 cut(s)	201, 258, 326, 335, 450
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	7 cut(s)	208, 411, 414, 549, 648, 813, 921
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	241, 691, 920
HgaI	GACGC	2 cut(s)	98, 629
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	7 cut(s)	101, 148, 196, 555, 745, 763, 854
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HphI	GGTGA	3 cut(s)	74, 871, 986
Hpy166II	GTNNAC	1 cut(s)	779
Hpy188I	TCNGA	5 cut(s)	14, 503, 622, 828, 966
Hpy188III	TCNNGA	4 cut(s)	187, 291, 313, 440
Hpy8I	GTNNAC	1 cut(s)	779
HpyAV	CCTTC	2 cut(s)	231, 252
HpyCH4III	ACNGT	3 cut(s)	582, 875, 998
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	413, 455, 779, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 422, 554, 821
HpyF3I	CTNAG	3 cut(s)	825, 864, 972
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	7 cut(s)	101, 148, 196, 555, 745, 763, 854
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	4 cut(s)	39, 495, 507, 868
LmnI	GCTCC	2 cut(s)	15, 371
Lsp1109I	GCAGC	5 cut(s)	219, 397, 425, 560, 634
LweI	GCATC	2 cut(s)	67, 187
MaeI	CTAG	5 cut(s)	201, 258, 326, 335, 450
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	4 cut(s)	796, 859, 925, 983
MalI	GATC	4 cut(s)	41, 497, 509, 870
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	4 cut(s)	39, 495, 507, 868
MboII	GAAGA	4 cut(s)	243, 308, 335, 706
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	3 cut(s)	334, 737, 781
MluCI	AATT	6 cut(s)	18, 54, 375, 392, 456, 628
MmeI	TCCRAC	2 cut(s)	871, 944
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	746, 876
MspA1I	CMGCKG	3 cut(s)	575, 647, 923
MunI	CAATTG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	410, 422, 554, 821
NdeII	GATC	4 cut(s)	39, 495, 507, 868
NlaIII	CATG	7 cut(s)	101, 148, 196, 555, 745, 763, 854
NlaIV	GGNNCC	1 cut(s)	331
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	2 cut(s)	859, 925
NspI	RCATGY	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	698
PflMI	CCANNNNNTGG	2 cut(s)	525, 650
PkrI	GCNGC	7 cut(s)	209, 412, 415, 550, 649, 814, 922
Psp1406I	AACGTT	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	2 cut(s)	746, 876
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	7 cut(s)	208, 411, 414, 549, 648, 813, 921
Sau3AI	GATC	4 cut(s)	39, 495, 507, 868
SduI	GDGCHC	3 cut(s)	334, 737, 781
SfaNI	GCATC	2 cut(s)	67, 187
SfcI	CTRYAG	2 cut(s)	411, 790
SfuI	TTCGAA	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	746, 876
SmlI	CTYRAG	4 cut(s)	28, 185, 289, 613
SmoI	CTYRAG	4 cut(s)	28, 185, 289, 613
Sse9I	AATT	6 cut(s)	18, 54, 375, 392, 456, 628
SsiI	CCGC	6 cut(s)	347, 573, 678, 812, 921, 945
SspMI	CTAG	5 cut(s)	201, 258, 326, 335, 450
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	582, 875, 998
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	121, 270, 468
TasI	AATT	6 cut(s)	18, 54, 375, 392, 456, 628
TauI	GCSGC	2 cut(s)	815, 923
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	2 cut(s)	822, 880
TseFI	GTSAC	2 cut(s)	859, 925
TseI	GCWGC	5 cut(s)	207, 410, 413, 548, 647
Tsp45I	GTSAC	2 cut(s)	859, 925
TspDTI	ATGAA	2 cut(s)	107, 795
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	822, 880
Van91I	CCANNNNNTGG	2 cut(s)	525, 650
VneI	GTGCAC	1 cut(s)	777
XceI	RCATGY	1 cut(s)	763
XmaJI	CCTAGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	5 cut(s)	201, 258, 326, 335, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.