FvH4_6g00690

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010953
Physical Location & Seq
Forward (+)
397164 .. 400627
3464 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00690.t2

Sequence Viewer

Length: 1281 bp
ATGGCATCGGTGTTTCTGTACCATGTGGTGGGTGATCTAACGGTCGGGAAGCCGGAGATGGTGGAGTTCTGCGAGACGGAGTCGGTGGAGGCGGCGATAAAGGCTATCGGAGATTCGACCGAGTGTGGGATACCGGTGTGGAAGAGGAAACCACATGCGGGTATTGAAACCAATGAAATGAGGCAGCAGAGGTTTGTGGGGATTCTCAATTCACTTGACATTGTTGCTTTCTTTGCTAAAAAAGAGTGTATGGAGGATCATGACAAGGCTCTCAACACTCCTGTTGCCGAAGTTGTTGCTCCTAATAATTCCCTGCTGCGCCAGGTTGATCCCGGCACAAGGTTGATAGATGCACTGGAGATGATGAAGCATGGTGTAAGGCGTCTTCTTGTCCGAAAGAGTGTCGTATGGCAAGGCATGAGCAAGCGATTTTCAATTCTCTATAATGGTAAGTGGCTCAAGAATGCCGATACTAGTGGCAGCAGCAATAACCTTGGTGCCAGTTCCAATCGGCCTTCCTCATCGTCCACTACCAGCGCCCGCGACAAATTTTGCTGTCTATCAAGAGAAGATGTTATACGGTTCCTTATTGGTTGCTTAGGTGCTCTAGCACCTCTTCCTCTCTCCTCTATCTCCTCGGTTGGAGCTATCAACCCAAACTACAAGTCGATTGAAGCGACATCCCCAGCCATTGAAGCCACTAAGAAACTTCCTGAAGACCCCAGTGCAATTGCTGTTATCGAACAGTTGCAGGATGGTCAGTATAAGATTATTGGAGAGATCTCCGCCTCCAAACTATGGAAATGTGATCACTTAGCAGCAGCATGGGCTTTAGCTAATCTCTCCGGTGGACAATTTGTAATGGGGGTTGAGGATAACATGTCCTCGAGGTCACTGAAAGTTATCGCTGTAAATCAAGCTGCTGGGAATAACGATCTTGCTAATGGTGGTGAGTCGACAAGACCAAAGAAATTCAGTAGCAAGAGTATAGGTTTTGACCCTGCAAACCCGAGCTTTGCAGCGAGTAGAACCATGTACAGGGGTAGAAGTGCACCTTTGACATGCAAGGTTACAAGTTCATTGGCTGCTGTCATGGCCCAGATGTTGTCTCACAGAGCAACCCATGTCTGGGTAACTGAGGATGAAAGTGATGATGTTTTAGTTGGAGTTGTTGGTTATGCAGATATTATGGTTGCTGTCACCAAGCAGCCAGCCTCCGTTGTCCCTCCACCAGGTCGGTCTACTGAGCATTCTAGCATCGCTAATGAAATCCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

427

Amino Acids

45.86

Weight (kDa)

7.6

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65320
fragaria_vesca FvH4_6g00690 FvH4_6g00690 FvH4_6g00690
malus_domestica MD04G1243500.v1.1 MD12G1259100.v1.1
prunus_persica Prupe.6G359700_v2.0.a1
pyrus_communis pycom12g23760
rosa_chinensis RchiOBHm_Chr3g0448131
rosa_laevigata RLG00000025944 RLG00000026020
rosa_multiflora Rmu_sc0005969.1_g000029
rosa_roxburghii Rroxscaffold_6G00426260
rosa_rugosa Rorug02G0608300 Rorug02G0608400
rosa_samantha Rh3AG008200 Rh3BG007700 Rh3CG007700 Rh3DG008300
rosa_wichuraiana Rw3G000640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 886
AccB1I GGYRCC 1 cut(s) 497
AccB7I CCANNNNNTGG 2 cut(s) 28, 798
AccI GTMKAC 2 cut(s) 956, 1241
AccII CGCG 1 cut(s) 543
AciI CCGC 4 cut(s) 92, 158, 541, 786
AclWI GGATC 2 cut(s) 264, 323
AcsI RAATTY 2 cut(s) 548, 971
AcuI CTGAAG 1 cut(s) 735
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 2 cut(s) 20, 1037
AfiI CCNNNNNNNGG 9 cut(s) 28, 126, 158, 339, 798, 1038, 1128, 1129, 1232
AflIII ACRYGT 1 cut(s) 879
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 4 cut(s) 167, 435, 674, 695
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 2 cut(s) 321, 1231
AluBI AGCT 4 cut(s) 647, 836, 920, 1014
AluI AGCT 4 cut(s) 647, 836, 920, 1014
Alw21I GWGCWC 2 cut(s) 607, 1054
Alw26I GTCTC 2 cut(s) 68, 1113
Alw44I GTGCAC 1 cut(s) 1050
AlwI GGATC 2 cut(s) 264, 323
Ama87I CYCGRG 2 cut(s) 886, 1009
AoxI GGCC 2 cut(s) 512, 1095
ApaLI GTGCAC 1 cut(s) 1050
ApoI RAATTY 2 cut(s) 548, 971
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AsiGI ACCGGT 1 cut(s) 133
AspLEI GCGC 2 cut(s) 321, 539
AspS9I GGNCC 1 cut(s) 1096
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 44, 962, 1192
AvaI CYCGRG 2 cut(s) 886, 1009
BaeGI GKGCMC 1 cut(s) 1054
BaeI ACNNNNGTAYC 2 cut(s) 122, 155
BanI GGYRCC 1 cut(s) 497
BarI GAAGNNNNNNTAC 4 cut(s) 369, 401, 561, 593
BbsI GAAGAC 2 cut(s) 377, 723
Bbv12I GWGCWC 2 cut(s) 607, 1054
BccI CCATC 2 cut(s) 52, 749
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 2 cut(s) 323, 1233
BciVI GTATCC 1 cut(s) 123
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 68, 1113
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 3 cut(s) 474, 608, 1254
BfoI RGCGCY 1 cut(s) 540
BfuI GTATCC 1 cut(s) 123
BglII AGATCT 1 cut(s) 780
Bme1390I CCNGG 3 cut(s) 323, 333, 1233
BmeT110I CYCGRG 2 cut(s) 886, 1009
BmgT120I GGNCC 1 cut(s) 1096
BmiI GGNNCC 2 cut(s) 499, 584
BmrFI CCNGG 3 cut(s) 323, 333, 1233
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 3 cut(s) 14, 340, 1266
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 2 cut(s) 377, 723
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 493, 636
BsaWI WCCGGW 2 cut(s) 133, 845
Bsc4I CCNNNNNNNGG 9 cut(s) 28, 126, 158, 339, 798, 1038, 1128, 1129, 1232
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 360, 501, 723
BseBI CCWGG 2 cut(s) 323, 1233
BseDI CCNNGG 2 cut(s) 493, 636
BseGI GGATG 3 cut(s) 680, 760, 1147
BseLI CCNNNNNNNGG 9 cut(s) 28, 126, 158, 339, 798, 1038, 1128, 1129, 1232
BseMII CTCAG 2 cut(s) 1128, 1236
BseNI ACTGG 3 cut(s) 360, 501, 723
BseRI GAGGAG 2 cut(s) 616, 625
BseSI GKGCMC 1 cut(s) 1054
BseYI CCCAGC 2 cut(s) 685, 923
Bsh1236I CGCG 1 cut(s) 543
Bsh1285I CGRYCG 2 cut(s) 45, 120
BshFI GGCC 2 cut(s) 514, 1097
BshNI GGYRCC 1 cut(s) 497
BshTI ACCGGT 1 cut(s) 133
BsiEI CGRYCG 2 cut(s) 45, 120
BsiHKAI GWGCWC 2 cut(s) 607, 1054
BsiHKCI CYCGRG 2 cut(s) 886, 1009
BsiSI CCGG 4 cut(s) 53, 134, 333, 846
BslFI GGGAC 1 cut(s) 1208
BslI CCNNNNNNNGG 9 cut(s) 28, 126, 158, 339, 798, 1038, 1128, 1129, 1232
BsmAI GTCTC 2 cut(s) 68, 1113
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 1208
BsmI GAATGC 2 cut(s) 469, 1249
BsnI GGCC 2 cut(s) 514, 1097
BsoBI CYCGRG 2 cut(s) 886, 1009
Bsp1286I GDGCHC 2 cut(s) 607, 1054
Bsp1407I TGTACA 1 cut(s) 1035
Bsp143I GATC 6 cut(s) 34, 256, 328, 780, 808, 934
BspACI CCGC 4 cut(s) 92, 158, 541, 786
BspANI GGCC 2 cut(s) 514, 1097
BspCNI CTCAG 2 cut(s) 1129, 1237
BspFNI CGCG 1 cut(s) 543
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 499, 584
BspPI GGATC 2 cut(s) 264, 323
BspT107I GGYRCC 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 1035
BsrI ACTGG 3 cut(s) 360, 501, 723
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 493, 636
BssMI GATC 6 cut(s) 34, 256, 328, 780, 808, 934
BssNI GRCGYC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 2 cut(s) 323, 1233
Bst4CI ACNGT 3 cut(s) 43, 582, 747
Bst6I CTCTTC 2 cut(s) 137, 621
BstACI GRCGYC 1 cut(s) 382
BstAUI TGTACA 1 cut(s) 1035
BstC8I GCNNGC 3 cut(s) 425, 541, 1212
BstDEI CTNAG 5 cut(s) 598, 702, 814, 1137, 1245
BstENI CCTNNNNNAGG 1 cut(s) 1230
BstF5I GGATG 3 cut(s) 680, 760, 1147
BstFNI CGCG 1 cut(s) 543
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 2 cut(s) 321, 539
BstKTI GATC 6 cut(s) 37, 259, 331, 783, 811, 937
BstMAI GTCTC 2 cut(s) 68, 1113
BstMBI GATC 6 cut(s) 34, 256, 328, 780, 808, 934
BstMCI CGRYCG 2 cut(s) 45, 120
BstMWI GCNNNNNNNGC 5 cut(s) 101, 233, 695, 827, 1094
BstNI CCWGG 2 cut(s) 323, 1233
BstNSI RCATGY 3 cut(s) 158, 883, 1065
BstSCI CCNGG 3 cut(s) 321, 331, 1231
BstSLI GKGCMC 1 cut(s) 1054
BstUI CGCG 1 cut(s) 543
BstV2I GAAGAC 2 cut(s) 377, 723
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 514, 1097
BtgZI GCGATG 1 cut(s) 1243
BtsCI GGATG 3 cut(s) 680, 760, 1147
BtsIMutI CAGTG 3 cut(s) 353, 730, 893
Cac8I GCNNGC 3 cut(s) 425, 541, 1212
CciI TCATGA 1 cut(s) 259
CfoI GCGC 2 cut(s) 321, 539
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 1096
CseI GACGC 1 cut(s) 371
CsiI ACCWGGT 1 cut(s) 1231
Csp6I GTAC 2 cut(s) 19, 1036
CspAI ACCGGT 1 cut(s) 133
CviQI GTAC 2 cut(s) 19, 1036
DdeI CTNAG 5 cut(s) 598, 702, 814, 1137, 1245
DpnI GATC 6 cut(s) 36, 258, 330, 782, 810, 936
DpnII GATC 6 cut(s) 34, 256, 328, 780, 808, 934
Eam1104I CTCTTC 2 cut(s) 137, 621
EarI CTCTTC 2 cut(s) 137, 621
EciI GGCGGA 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 735
Eco88I CYCGRG 2 cut(s) 886, 1009
EcoNI CCTNNNNNAGG 1 cut(s) 1230
EcoRII CCWGG 2 cut(s) 321, 1231
EcoT14I CCWWGG 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 1039, 1071
FaqI GGGAC 1 cut(s) 1208
FauI CCCGC 2 cut(s) 151, 548
FbaI TGATCA 1 cut(s) 808
FblI GTMKAC 2 cut(s) 956, 1241
FokI GGATG 3 cut(s) 667, 767, 1154
FspBI CTAG 3 cut(s) 474, 608, 1254
GlaI GCGC 2 cut(s) 320, 538
GsaI CCCAGC 2 cut(s) 689, 927
GsuI CTGGAG 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 2 cut(s) 514, 1097
HapII CCGG 4 cut(s) 53, 134, 333, 846
HgaI GACGC 1 cut(s) 371
HhaI GCGC 2 cut(s) 321, 539
Hin1I GRCGYC 1 cut(s) 382
Hin6I GCGC 2 cut(s) 319, 537
HinP1I GCGC 2 cut(s) 319, 537
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HinfI GANTC 4 cut(s) 80, 113, 202, 953
HpaII CCGG 4 cut(s) 53, 134, 333, 846
HphI GGTGA 3 cut(s) 44, 962, 1192
Hpy166II GTNNAC 5 cut(s) 528, 851, 957, 1052, 1242
Hpy188I TCNGA 2 cut(s) 110, 395
Hpy188III TCNNGA 5 cut(s) 46, 260, 460, 564, 713
Hpy8I GTNNAC 5 cut(s) 528, 851, 957, 1052, 1242
HpyAV CCTTC 1 cut(s) 525
HpyCH4III ACNGT 3 cut(s) 43, 582, 747
HpyCH4V TGCA 8 cut(s) 353, 728, 751, 1004, 1019, 1052, 1065, 1181
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 233, 695, 827, 1094
HpyF3I CTNAG 5 cut(s) 598, 702, 814, 1137, 1245
Hsp92I GRCGYC 1 cut(s) 382
HspAI GCGC 2 cut(s) 319, 537
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 6 cut(s) 34, 256, 328, 780, 808, 934
LmnI GCTCC 2 cut(s) 304, 644
LweI GCATC 3 cut(s) 14, 340, 1266
MabI ACCWGGT 1 cut(s) 1231
MaeI CTAG 3 cut(s) 474, 608, 1254
MaeIII GTNAC 4 cut(s) 891, 1069, 1132, 1198
MalI GATC 6 cut(s) 36, 258, 330, 782, 810, 936
MboI GATC 6 cut(s) 34, 256, 328, 780, 808, 934
MboII GAAGA 5 cut(s) 154, 377, 581, 608, 728
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 2 cut(s) 607, 1054
MluCI AATT 7 cut(s) 208, 307, 435, 548, 729, 854, 971
MlyI GAGTC 2 cut(s) 89, 962
MmeI TCCRAC 2 cut(s) 622, 1144
MspI CCGG 4 cut(s) 53, 134, 333, 846
MspR9I CCNGG 3 cut(s) 323, 333, 1233
MunI CAATTG 1 cut(s) 729
Mva1269I GAATGC 2 cut(s) 469, 1249
MvaI CCWGG 2 cut(s) 323, 1233
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 5 cut(s) 101, 233, 695, 827, 1094
NciI CCSGG 1 cut(s) 333
NdeII GATC 6 cut(s) 34, 256, 328, 780, 808, 934
NlaIV GGNNCC 2 cut(s) 499, 584
NmuCI GTSAC 2 cut(s) 891, 1198
NspI RCATGY 3 cut(s) 158, 883, 1065
PaeR7I CTCGAG 1 cut(s) 886
PagI TCATGA 1 cut(s) 259
PciI ACATGT 1 cut(s) 879
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PctI GAATGC 2 cut(s) 469, 1249
PfeI GAWTC 2 cut(s) 113, 202
PflFI GACNNNGTC 1 cut(s) 79
PflMI CCANNNNNTGG 2 cut(s) 28, 798
PinAI ACCGGT 1 cut(s) 133
PleI GAGTC 2 cut(s) 88, 961
PpsI GAGTC 2 cut(s) 88, 961
PscI ACATGT 1 cut(s) 879
Psp6I CCWGG 2 cut(s) 321, 1231
PspFI CCCAGC 2 cut(s) 685, 923
PspGI CCWGG 2 cut(s) 321, 1231
PspN4I GGNNCC 2 cut(s) 499, 584
PspPI GGNCC 1 cut(s) 1096
PspXI VCTCGAGB 1 cut(s) 886
PsuI RGATCY 1 cut(s) 780
PsyI GACNNNGTC 1 cut(s) 79
RsaI GTAC 2 cut(s) 20, 1037
RsaNI GTAC 2 cut(s) 19, 1036
SalI GTCGAC 1 cut(s) 955
Sau3AI GATC 6 cut(s) 34, 256, 328, 780, 808, 934
Sau96I GGNCC 1 cut(s) 1096
SchI GAGTC 2 cut(s) 89, 962
ScrFI CCNGG 3 cut(s) 323, 333, 1233
SduI GDGCHC 2 cut(s) 607, 1054
SexAI ACCWGGT 1 cut(s) 1231
SfaNI GCATC 3 cut(s) 14, 340, 1266
Sfr274I CTCGAG 1 cut(s) 886
SlaI CTCGAG 1 cut(s) 886
SmlI CTYRAG 2 cut(s) 458, 886
SmoI CTYRAG 2 cut(s) 458, 886
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 7 cut(s) 208, 307, 435, 548, 729, 854, 971
SsiI CCGC 4 cut(s) 92, 158, 541, 786
SspMI CTAG 3 cut(s) 474, 608, 1254
StyD4I CCNGG 3 cut(s) 321, 331, 1231
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 3 cut(s) 43, 582, 747
TaqI TCGA 5 cut(s) 116, 668, 741, 887, 956
TaqII GACCGA 2 cut(s) 134, 1227
TasI AATT 7 cut(s) 208, 307, 435, 548, 729, 854, 971
TatI WGTACW 1 cut(s) 1035
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 113, 202
TscAI CASTG 3 cut(s) 360, 730, 900
TseFI GTSAC 2 cut(s) 891, 1198
Tsp45I GTSAC 2 cut(s) 891, 1198
TspDTI ATGAA 5 cut(s) 189, 380, 1068, 1158, 1281
TspGWI ACGGA 2 cut(s) 92, 1207
TspRI CASTG 3 cut(s) 360, 730, 900
Tth111I GACNNNGTC 1 cut(s) 79
Van91I CCANNNNNTGG 2 cut(s) 28, 798
VneI GTGCAC 1 cut(s) 1050
XagI CCTNNNNNAGG 1 cut(s) 1230
XapI RAATTY 2 cut(s) 548, 971
XceI RCATGY 3 cut(s) 158, 883, 1065
XhoI CTCGAG 1 cut(s) 886
XmiI GTMKAC 2 cut(s) 956, 1241
XspI CTAG 3 cut(s) 474, 608, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.