Prupe.6G359700_v2.0.a1

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010953
Physical Location & Seq
Reverse (-)
30390360 .. 30393238
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G359700.1

Sequence Viewer

Length: 1266 bp
ATGGCATCGGTGTTTCTTTTCCATGTTGTGGGTGATCTAACGGTGGGGAAGCCAGAGATGGTGGAACTGTGTGAGACGGAGACGATGGAGGCTGCGATAAAAGCGATCGGAGAGTCGATGGAATGTGGTATACCAGTATGGAAGAAGAAATCACATGTGGGTATGGTTGAAAACGATGAAATGAGGCAGCAGAGGTTTGTGGGCATCCTCAATTCCCTCGACATTGTTGCTTTCTTTGCTAAAAGTGAGTGTCTGGAGGATCATGATAAGGCTTTGAAGACTCCGGTGTCTGATGTTGTTGTTCCAAATAATTCTTTGCTGAGGCAGGTTGATCCTGCGACAAGGTTGATAGATGCACTGGAGATGATGAAGCATGGTGTAAAGCGTCTTCTTGTTCGAAAGAGTGTTGTATGGAAAGGCATGAGCAAACGTTTCTCGGTTATCTATAGTGGTAAGTGGCTCAAGAACATGGATACTAGTGGCAGCAGCAATAGCCTTGCTGCCAATCGGCCTTCCTCATCTTCCGCTACCAGTACCCGCGACAAGTTTTGTTGTCTCTCAAGAGAAGATGTTATTCGTTTCCTGATTGGCTGCCTAGGTGCCCTAGCTCCTATTCCTCTCTCCTCTATCTCCACTCTTGGAGCCATTAACACAAACTACCAGTTTGTTGAAGCCTCGTCTGCAGCCATTGAAGCCACTCATAAGCTTCCTGAAGACCCTAGTGCAGTTGCTGTTGTCGAACACACACCGGAAGATCAGTACAAGATTATTGGAGAGATATCTGCCTCCAAACTATGGAAATGTGATTACTTAGCTGCAGCATGGGCTTTAGCTAATCTCTCAGCTGGACAGTTTGTCATGGGAGTTGAGGATAATGCGTCCTCAAGATCACTGCCAGATATCTCTGTAAATCAAATTGCTGGAAATAATAATGTGGCTAATGGTGGTGGGTCAACAAAGCCGAAAAAGTTCAGTAGCAGGAGTATAGGGTTCAGTCCTGCGAGCGCAAGCTTGGGAGTGAGTAGAAGCATGTATAGAGGCAGAAGCGCACCATTGACCTGTAAGGTTACAAGTTCATTGGCAGCAGTCATGGCTCAGATGTTGTCTCACAGGGCAACCCATGTGTGGGTGACTGAGGATGAAAGTGATGATATCTTAGTTGGAGTGGTGGGTTATGCGGATATTATGGCTGCTGTGACCAAACAACCAGCCCCAATTACCCCTGCACCAGGGCGGTCGACAGAGGGTAATGAGATTCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

422

Amino Acids

45.25

Weight (kDa)

6.76

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65320
fragaria_vesca FvH4_6g00690 FvH4_6g00690 FvH4_6g00690
malus_domestica MD04G1243500.v1.1 MD12G1259100.v1.1
prunus_persica Prupe.6G359700_v2.0.a1
pyrus_communis pycom12g23760
rosa_chinensis RchiOBHm_Chr3g0448131
rosa_laevigata RLG00000025944 RLG00000026020
rosa_multiflora Rmu_sc0005969.1_g000029
rosa_roxburghii Rroxscaffold_6G00426260
rosa_rugosa Rorug02G0608300 Rorug02G0608400
rosa_samantha Rh3AG008200 Rh3BG007700 Rh3CG007700 Rh3DG008300
rosa_wichuraiana Rw3G000640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 599
AccB7I CCANNNNNTGG 2 cut(s) 28, 795
AccI GTMKAC 2 cut(s) 130, 1238
AccII CGCG 1 cut(s) 540
AciI CCGC 4 cut(s) 525, 538, 1178, 1234
AclI AACGTT 1 cut(s) 430
AclWI GGATC 2 cut(s) 267, 326
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 2 cut(s) 535, 761
AfiI CCNNNNNNNGG 5 cut(s) 28, 795, 1125, 1126, 1229
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 4 cut(s) 170, 277, 671, 692
AhdI GACNNNNNGTC 1 cut(s) 854
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 1228
AluBI AGCT 6 cut(s) 608, 706, 815, 833, 845, 1011
AluI AGCT 6 cut(s) 608, 706, 815, 833, 845, 1011
Alw26I GTCTC 4 cut(s) 68, 74, 560, 1110
AlwI GGATC 2 cut(s) 267, 326
AlwNI CAGNNNCTG 1 cut(s) 731
AoxI GGCC 1 cut(s) 509
Asp700I GAANNNNTTC 1 cut(s) 968
AspA2I CCTAGG 1 cut(s) 595
AspLEI GCGC 2 cut(s) 1007, 1049
AsuHPI GGTGA 2 cut(s) 44, 1141
AsuII TTCGAA 1 cut(s) 397
AvrII CCTAGG 1 cut(s) 595
BaeGI GKGCMC 1 cut(s) 604
BanI GGYRCC 1 cut(s) 599
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BbsI GAAGAC 3 cut(s) 284, 380, 720
BbvCI CCTCAGC 1 cut(s) 320
BccI CCATC 3 cut(s) 52, 79, 112
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 1230
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 4 cut(s) 68, 74, 560, 1110
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 4 cut(s) 477, 596, 605, 720
BfmI CTRYAG 3 cut(s) 445, 681, 816
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 466
BlnI CCTAGG 1 cut(s) 595
Bme1390I CCNGG 1 cut(s) 1230
BmeRI GACNNNNNGTC 1 cut(s) 854
BmiI GGNNCC 2 cut(s) 601, 643
BmrFI CCNGG 1 cut(s) 1230
BmsI GCATC 3 cut(s) 14, 213, 343
BpiI GAAGAC 3 cut(s) 284, 380, 720
BpmI CTGGAG 2 cut(s) 275, 380
Bpu10I CCTNAGC 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 397
BpuEI CTTGAG 3 cut(s) 446, 544, 868
BsaJI CCNNGG 2 cut(s) 595, 1229
BsaWI WCCGGW 2 cut(s) 283, 748
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 795, 1125, 1126, 1229
Bse1I ACTGG 4 cut(s) 134, 363, 531, 661
BseBI CCWGG 1 cut(s) 1230
BseDI CCNNGG 2 cut(s) 595, 1229
BseGI GGATG 2 cut(s) 204, 1144
BseLI CCNNNNNNNGG 5 cut(s) 28, 795, 1125, 1126, 1229
BseMII CTCAG 4 cut(s) 311, 855, 1109, 1125
BseNI ACTGG 4 cut(s) 134, 363, 531, 661
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 604
BsgI GTGCAG 2 cut(s) 744, 1209
Bsh1236I CGCG 1 cut(s) 540
Bsh1285I CGRYCG 2 cut(s) 108, 1238
BshFI GGCC 1 cut(s) 511
BshNI GGYRCC 1 cut(s) 599
BsiEI CGRYCG 2 cut(s) 108, 1238
BsiSI CCGG 2 cut(s) 284, 749
BslI CCNNNNNNNGG 5 cut(s) 28, 795, 1125, 1126, 1229
BsmAI GTCTC 4 cut(s) 68, 74, 560, 1110
BsmBI CGTCTC 2 cut(s) 68, 74
BsnI GGCC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 6 cut(s) 34, 105, 259, 331, 754, 887
BspACI CCGC 4 cut(s) 525, 538, 1178, 1234
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 4 cut(s) 312, 854, 1108, 1126
BspFNI CGCG 1 cut(s) 540
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 601, 643
BspMAI CTGCAG 2 cut(s) 685, 820
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 2 cut(s) 267, 326
BspT104I TTCGAA 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 599
BsrI ACTGG 4 cut(s) 134, 363, 531, 661
BssECI CCNNGG 2 cut(s) 595, 1229
BssMI GATC 6 cut(s) 34, 105, 259, 331, 754, 887
BssNAI GTATAC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 595
Bst1107I GTATAC 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 1230
Bst4CI ACNGT 3 cut(s) 43, 69, 852
BstBI TTCGAA 1 cut(s) 397
BstC8I GCNNGC 2 cut(s) 1003, 1009
BstDEI CTNAG 6 cut(s) 320, 811, 841, 1095, 1134, 1156
BstENI CCTNNNNNAGG 1 cut(s) 1227
BstF5I GGATG 2 cut(s) 204, 1144
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 2 cut(s) 1007, 1049
BstKTI GATC 6 cut(s) 37, 108, 262, 334, 757, 890
BstMAI GTCTC 4 cut(s) 68, 74, 560, 1110
BstMBI GATC 6 cut(s) 34, 105, 259, 331, 754, 887
BstMCI CGRYCG 2 cut(s) 108, 1238
BstMWI GCNNNNNNNGC 7 cut(s) 101, 236, 492, 680, 692, 824, 1091
BstNI CCWGG 1 cut(s) 1230
BstNSI RCATGY 2 cut(s) 158, 1033
BstSCI CCNGG 1 cut(s) 1228
BstSFI CTRYAG 3 cut(s) 445, 681, 816
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 1 cut(s) 540
BstV2I GAAGAC 3 cut(s) 284, 380, 720
BstZ17I GTATAC 1 cut(s) 131
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 2 cut(s) 204, 1144
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 2 cut(s) 356, 890
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 1003, 1009
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 1007, 1049
CseI GACGC 2 cut(s) 374, 867
Csp6I GTAC 2 cut(s) 534, 760
CviQI GTAC 2 cut(s) 534, 760
DdeI CTNAG 6 cut(s) 320, 811, 841, 1095, 1134, 1156
DpnI GATC 6 cut(s) 36, 107, 261, 333, 756, 889
DpnII GATC 6 cut(s) 34, 105, 259, 331, 754, 887
DrdI GACNNNNNNGTC 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 854
DseDI GACNNNNNNGTC 1 cut(s) 286
Eam1105I GACNNNNNGTC 1 cut(s) 854
Eco130I CCWWGG 1 cut(s) 595
Eco32I GATATC 3 cut(s) 780, 901, 1153
Eco57I CTGAAG 1 cut(s) 732
EcoNI CCTNNNNNAGG 1 cut(s) 1227
EcoRII CCWGG 1 cut(s) 1228
EcoRV GATATC 3 cut(s) 780, 901, 1153
EcoT14I CCWWGG 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 595
Esp3I CGTCTC 2 cut(s) 68, 74
FauI CCCGC 1 cut(s) 545
FblI GTMKAC 2 cut(s) 130, 1238
FokI GGATG 2 cut(s) 191, 1151
FspBI CTAG 4 cut(s) 477, 596, 605, 720
GlaI GCGC 2 cut(s) 1006, 1048
GsuI CTGGAG 2 cut(s) 275, 380
HaeIII GGCC 1 cut(s) 511
HapII CCGG 2 cut(s) 284, 749
HgaI GACGC 2 cut(s) 374, 867
HhaI GCGC 2 cut(s) 1007, 1049
Hin6I GCGC 2 cut(s) 1005, 1047
HinP1I GCGC 2 cut(s) 1005, 1047
HincII GTYRAC 2 cut(s) 954, 1239
HindII GTYRAC 2 cut(s) 954, 1239
HindIII AAGCTT 2 cut(s) 704, 1009
HinfI GANTC 3 cut(s) 113, 280, 1255
HpaII CCGG 2 cut(s) 284, 749
HphI GGTGA 2 cut(s) 44, 1141
Hpy166II GTNNAC 3 cut(s) 131, 954, 1239
Hpy188I TCNGA 3 cut(s) 110, 292, 1098
Hpy188III TCNNGA 7 cut(s) 254, 263, 463, 561, 583, 710, 885
Hpy8I GTNNAC 3 cut(s) 131, 954, 1239
HpyAV CCTTC 1 cut(s) 522
HpyCH4III ACNGT 3 cut(s) 43, 69, 852
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 5 cut(s) 356, 683, 725, 818, 1226
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 236, 492, 680, 692, 824, 1091
HpyF3I CTNAG 6 cut(s) 320, 811, 841, 1095, 1134, 1156
HpySE526I ACGT 1 cut(s) 430
HspAI GCGC 2 cut(s) 1005, 1047
Kzo9I GATC 6 cut(s) 34, 105, 259, 331, 754, 887
LmnI GCTCC 2 cut(s) 613, 641
LweI GCATC 3 cut(s) 14, 213, 343
MaeI CTAG 4 cut(s) 477, 596, 605, 720
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 3 cut(s) 1066, 1129, 1195
MalI GATC 6 cut(s) 36, 107, 261, 333, 756, 889
MboI GATC 6 cut(s) 34, 105, 259, 331, 754, 887
MboII GAAGA 8 cut(s) 154, 157, 289, 380, 513, 578, 725, 764
MfeI CAATTG 1 cut(s) 1261
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 5 cut(s) 211, 310, 915, 1215, 1261
MlyI GAGTC 2 cut(s) 122, 274
MmeI TCCRAC 1 cut(s) 1141
MroXI GAANNNNTTC 1 cut(s) 968
MseI TTAA 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 2 cut(s) 284, 749
MspR9I CCNGG 1 cut(s) 1230
MunI CAATTG 1 cut(s) 1261
MvaI CCWGG 1 cut(s) 1230
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 7 cut(s) 101, 236, 492, 680, 692, 824, 1091
NdeII GATC 6 cut(s) 34, 105, 259, 331, 754, 887
NlaIV GGNNCC 2 cut(s) 601, 643
NmuCI GTSAC 2 cut(s) 1129, 1195
NspI RCATGY 2 cut(s) 158, 1033
NspV TTCGAA 1 cut(s) 397
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 968
PfeI GAWTC 1 cut(s) 1255
PflMI CCANNNNNTGG 2 cut(s) 28, 795
Ple19I CGATCG 1 cut(s) 108
PleI GAGTC 2 cut(s) 121, 274
PpsI GAGTC 2 cut(s) 121, 274
PscI ACATGT 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 1228
PspGI CCWGG 1 cut(s) 1228
PspN4I GGNNCC 2 cut(s) 601, 643
PstI CTGCAG 2 cut(s) 685, 820
PstNI CAGNNNCTG 1 cut(s) 731
PvuI CGATCG 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 845
RsaI GTAC 2 cut(s) 535, 761
RsaNI GTAC 2 cut(s) 534, 760
SalI GTCGAC 1 cut(s) 1237
SaqAI TTAA 1 cut(s) 648
Sau3AI GATC 6 cut(s) 34, 105, 259, 331, 754, 887
SchI GAGTC 2 cut(s) 122, 274
ScrFI CCNGG 1 cut(s) 1230
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 3 cut(s) 14, 213, 343
SfcI CTRYAG 3 cut(s) 445, 681, 816
SfuI TTCGAA 1 cut(s) 397
SmlI CTYRAG 3 cut(s) 461, 559, 883
SmoI CTYRAG 3 cut(s) 461, 559, 883
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 5 cut(s) 211, 310, 915, 1215, 1261
SsiI CCGC 4 cut(s) 525, 538, 1178, 1234
SspMI CTAG 4 cut(s) 477, 596, 605, 720
StyD4I CCNGG 1 cut(s) 1228
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 43, 69, 852
TaiI ACGT 1 cut(s) 433
TaqI TCGA 5 cut(s) 116, 219, 397, 738, 1238
TasI AATT 5 cut(s) 211, 310, 915, 1215, 1261
TatI WGTACW 1 cut(s) 759
TfiI GAWTC 1 cut(s) 1255
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 2 cut(s) 363, 897
TseFI GTSAC 2 cut(s) 1129, 1195
Tsp45I GTSAC 2 cut(s) 1129, 1195
TspDTI ATGAA 4 cut(s) 192, 383, 1065, 1155
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 2 cut(s) 363, 897
Van91I CCANNNNNTGG 2 cut(s) 28, 795
XagI CCTNNNNNAGG 1 cut(s) 1227
XceI RCATGY 2 cut(s) 158, 1033
XmaJI CCTAGG 1 cut(s) 595
XmiI GTMKAC 2 cut(s) 130, 1238
XmnI GAANNNNTTC 1 cut(s) 968
XspI CTAG 4 cut(s) 477, 596, 605, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.