RLG00000026020

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010953
Physical Location & Seq
Reverse (-)
50015 .. 51900
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026020

Sequence Viewer

Length: 924 bp
ATGAGGCAGCAGAGGTTTGTGGGGATTCTCAACTCGCTTGACATTGTTGCTTTCTTTGCTAAAAGTGAGTGCTTGGAGGATCATGACAAGGCTCTTAAGACTCCGGTTTCTGAAGTTGTTGCTCATAATAATTCCTTGCTGCGTCAGGTTGATCCTGGGACAAGGTTGATAGATGCACTGGAGATGATGAAGCATGGTGTAAAGCGTCTTCTTGTTCGAAAGAGTGTCGTATGGCAAGGCATGAGCAAGCGCTTCTCAATTCTCTATAATGGTAAGTGGCTCAAGAATATGGATACTAGCAGCAGCAGCAATAACCTTGGTCCCAGTTCCAATCGGCCTTCCTCATCAACCACTACCAGCGCCCGCGACAAATTTTGCTCTCACAAGAGAAGACCACCTCTTCCTCTCTCCTCTATCTCCTCGGTTGGAGCTATCAACCCAAACTACAACTCGATTGAAGCCACATCTGCAGCCATTGAAGCCACGAAGAAACTTCCTGAAGACCCCTGTGAAATTGCTATTGTTGGAGAGATCTCTGCCTCCAAACTATGGAAATGTGATCACTTAGCAGCAGCATGGGCTTTAGCTAATCTCTCTGGTGGACAATTTGTAATGGGAGTTGAGGATAATGTGTCCTCAAGGTCACTGAAAGATTTTTCTGTAAATCAAGCTGCTGGGAATCACAATCTAGCTAATGGTGGTGGGTCGACAAAACCAAAGAAATTCAGTAGCAGGAGTATAGGTTTCAACGCTGCAATAGCAACCCATGTCTGGGTGACTGAGGATGAAAGTGATGATGTTTTAGTTGGAGTCGTTGGTTATGCGGATATTATGGTTGCTGTCACCAAACAACCATCCTCCGTTGTCCCTCCATCAGGTCGGTCTACTGCGAATTCTGGTATTGTTAATGACGTCCGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

308

Amino Acids

33.02

Weight (kDa)

9.24

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65320
fragaria_vesca FvH4_6g00690 FvH4_6g00690 FvH4_6g00690
malus_domestica MD04G1243500.v1.1 MD12G1259100.v1.1
prunus_persica Prupe.6G359700_v2.0.a1
pyrus_communis pycom12g23760
rosa_chinensis RchiOBHm_Chr3g0448131
rosa_laevigata RLG00000025944 RLG00000026020
rosa_multiflora Rmu_sc0005969.1_g000029
rosa_roxburghii Rroxscaffold_6G00426260
rosa_rugosa Rorug02G0608300 Rorug02G0608400
rosa_samantha Rh3AG008200 Rh3BG007700 Rh3CG007700 Rh3DG008300
rosa_wichuraiana Rw3G000640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 915
AccB7I CCANNNNNTGG 1 cut(s) 549
AccI GTMKAC 2 cut(s) 707, 884
AccII CGCG 1 cut(s) 366
AciI CCGC 3 cut(s) 364, 824, 916
AclWI GGATC 2 cut(s) 87, 146
AcsI RAATTY 3 cut(s) 371, 722, 892
AcuI CTGAAG 2 cut(s) 132, 519
AcyI GRCGYC 1 cut(s) 912
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 4 cut(s) 549, 771, 772, 875
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 458, 479, 748
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 431, 587, 671, 692
AluI AGCT 4 cut(s) 431, 587, 671, 692
AlwI GGATC 2 cut(s) 87, 146
Aor51HI AGCGCT 1 cut(s) 251
AoxI GGCC 1 cut(s) 335
ApoI RAATTY 3 cut(s) 371, 722, 892
AspLEI GCGC 2 cut(s) 252, 362
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 787, 835
AsuII TTCGAA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbsI GAAGAC 3 cut(s) 200, 397, 507
BccI CCATC 2 cut(s) 862, 880
BciT130I CCWGG 1 cut(s) 156
BciVI GTATCC 1 cut(s) 286
BclI TGATCA 1 cut(s) 559
BfaI CTAG 2 cut(s) 297, 689
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 2 cut(s) 253, 363
BfrI CTTAAG 1 cut(s) 95
BfuI GTATCC 1 cut(s) 286
BglII AGATCT 1 cut(s) 531
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 156
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 318
BpiI GAAGAC 3 cut(s) 200, 397, 507
BpmI CTGGAG 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 217
BpuEI CTTGAG 2 cut(s) 266, 622
BsaHI GRCGYC 1 cut(s) 912
BsaJI CCNNGG 3 cut(s) 155, 316, 420
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 4 cut(s) 549, 771, 772, 875
Bse1I ACTGG 2 cut(s) 183, 324
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 3 cut(s) 155, 316, 420
BseGI GGATG 2 cut(s) 790, 854
BseLI CCNNNNNNNGG 4 cut(s) 549, 771, 772, 875
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 2 cut(s) 183, 324
BseRI GAGGAG 2 cut(s) 400, 409
BseYI CCCAGC 1 cut(s) 674
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 3 cut(s) 172, 306, 851
BslI CCNNNNNNNGG 4 cut(s) 549, 771, 772, 875
BsmFI GGGAC 3 cut(s) 172, 306, 851
BsnI GGCC 1 cut(s) 337
Bsp119I TTCGAA 1 cut(s) 217
Bsp143I GATC 4 cut(s) 79, 151, 531, 559
BspACI CCGC 3 cut(s) 364, 824, 916
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 2 cut(s) 87, 146
BspT104I TTCGAA 1 cut(s) 217
BspTI CTTAAG 1 cut(s) 95
BsrI ACTGG 2 cut(s) 183, 324
BssECI CCNNGG 3 cut(s) 155, 316, 420
BssMI GATC 4 cut(s) 79, 151, 531, 559
BssNI GRCGYC 1 cut(s) 912
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 912
BstAFI CTTAAG 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 248, 364
BstDEI CTNAG 2 cut(s) 565, 780
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 2 cut(s) 790, 854
BstFNI CGCG 1 cut(s) 366
BstH2I RGCGCY 2 cut(s) 253, 363
BstHHI GCGC 2 cut(s) 252, 362
BstKTI GATC 4 cut(s) 82, 154, 534, 562
BstMBI GATC 4 cut(s) 79, 151, 531, 559
BstMWI GCNNNNNNNGC 6 cut(s) 56, 306, 467, 479, 578, 758
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 1 cut(s) 366
BstV2I GAAGAC 3 cut(s) 200, 397, 507
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 790, 854
BtsIMutI CAGTG 2 cut(s) 176, 644
Cac8I GCNNGC 2 cut(s) 248, 364
CciI TCATGA 1 cut(s) 82
CfoI GCGC 2 cut(s) 252, 362
Cfr13I GGNCC 1 cut(s) 320
CseI GACGC 2 cut(s) 131, 194
CviAII CATG 5 cut(s) 83, 194, 241, 576, 767
DdeI CTNAG 2 cut(s) 565, 780
DpnI GATC 4 cut(s) 81, 153, 533, 561
DpnII GATC 4 cut(s) 79, 151, 531, 559
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 320
Eco47III AGCGCT 1 cut(s) 251
Eco57I CTGAAG 2 cut(s) 132, 519
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoRI GAATTC 1 cut(s) 892
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 5 cut(s) 86, 197, 244, 579, 770
FaqI GGGAC 3 cut(s) 172, 306, 851
FatI CATG 5 cut(s) 82, 193, 240, 575, 766
FauI CCCGC 1 cut(s) 371
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 2 cut(s) 707, 884
FokI GGATG 2 cut(s) 797, 841
FspBI CTAG 2 cut(s) 297, 689
GlaI GCGC 2 cut(s) 251, 361
GsaI CCCAGC 1 cut(s) 678
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 2 cut(s) 253, 363
HaeIII GGCC 1 cut(s) 337
HapII CCGG 1 cut(s) 104
HgaI GACGC 2 cut(s) 131, 194
HhaI GCGC 2 cut(s) 252, 362
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 5 cut(s) 86, 197, 244, 579, 770
Hin6I GCGC 2 cut(s) 250, 360
HinP1I GCGC 2 cut(s) 250, 360
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 4 cut(s) 25, 100, 679, 810
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 787, 835
Hpy166II GTNNAC 3 cut(s) 602, 708, 885
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 3 cut(s) 83, 283, 497
Hpy8I GTNNAC 3 cut(s) 602, 708, 885
HpyAV CCTTC 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 912
HpyCH4V TGCA 3 cut(s) 176, 470, 755
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 306, 467, 479, 578, 758
HpyF3I CTNAG 2 cut(s) 565, 780
HpySE526I ACGT 1 cut(s) 912
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 5 cut(s) 86, 197, 244, 579, 770
HspAI GCGC 2 cut(s) 250, 360
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 79, 151, 531, 559
LmnI GCTCC 1 cut(s) 428
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 297, 689
MaeII ACGT 1 cut(s) 912
MaeIII GTNAC 3 cut(s) 642, 775, 841
MalI GATC 4 cut(s) 81, 153, 533, 561
MboI GATC 4 cut(s) 79, 151, 531, 559
MboII GAAGA 5 cut(s) 200, 392, 402, 499, 512
MfeI CAATTG 1 cut(s) 919
MflI RGATCY 1 cut(s) 531
MluCI AATT 8 cut(s) 130, 258, 371, 513, 605, 722, 892, 919
MlyI GAGTC 2 cut(s) 94, 819
MmeI TCCRAC 3 cut(s) 406, 505, 787
MseI TTAA 2 cut(s) 96, 906
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 919
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 6 cut(s) 56, 306, 467, 479, 578, 758
NdeII GATC 4 cut(s) 79, 151, 531, 559
NlaIII CATG 5 cut(s) 86, 197, 244, 579, 770
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 3 cut(s) 642, 775, 841
NspV TTCGAA 1 cut(s) 217
PagI TCATGA 1 cut(s) 82
PfeI GAWTC 2 cut(s) 25, 679
PflMI CCANNNNNTGG 1 cut(s) 549
PleI GAGTC 2 cut(s) 94, 818
PpsI GAGTC 2 cut(s) 94, 818
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 320
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 531
SalI GTCGAC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 96, 906
Sau3AI GATC 4 cut(s) 79, 151, 531, 559
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 2 cut(s) 94, 819
ScrFI CCNGG 1 cut(s) 156
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 217
SinI GGWCC 1 cut(s) 320
SmlI CTYRAG 3 cut(s) 95, 281, 637
SmoI CTYRAG 3 cut(s) 95, 281, 637
Sse9I AATT 8 cut(s) 130, 258, 371, 513, 605, 722, 892, 919
SsiI CCGC 3 cut(s) 364, 824, 916
SspMI CTAG 2 cut(s) 297, 689
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 316
TaiI ACGT 1 cut(s) 915
TaqI TCGA 3 cut(s) 217, 452, 707
TaqII GACCGA 1 cut(s) 870
TasI AATT 8 cut(s) 130, 258, 371, 513, 605, 722, 892, 919
TfiI GAWTC 2 cut(s) 25, 679
Tru1I TTAA 2 cut(s) 96, 906
Tru9I TTAA 2 cut(s) 96, 906
TscAI CASTG 2 cut(s) 183, 651
TseFI GTSAC 3 cut(s) 642, 775, 841
Tsp45I GTSAC 3 cut(s) 642, 775, 841
TspDTI ATGAA 2 cut(s) 203, 801
TspGWI ACGGA 1 cut(s) 850
TspRI CASTG 2 cut(s) 183, 651
Van91I CCANNNNNTGG 1 cut(s) 549
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 320
XagI CCTNNNNNAGG 1 cut(s) 873
XapI RAATTY 3 cut(s) 371, 722, 892
XmiI GTMKAC 2 cut(s) 707, 884
XspI CTAG 2 cut(s) 297, 689
ZraI GACGTC 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.