histone lysine demethylation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04490 AT3G04490 AT3G04490 AT3G04490 |
| fragaria_vesca | FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 |
| malus_domestica | MD04G1230100.v1.1 |
| prunus_persica | Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 |
| pyrus_communis | pycom04g20400 |
| rosa_chinensis | RchiOBHm_Chr3g0449631 |
| rosa_laevigata | RLG00000025813 |
| rosa_multiflora | Rmu_sc0009629.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00427530 |
| rosa_rugosa | Rorug02G0622600 |
| rosa_samantha | Rh3AG020400 Rh3BG021100 Rh3CG019600 Rh3DG020900 |
| rosa_wichuraiana | Rw3G001680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1997 |
| Acc36I | ACCTGC | 3 cut(s) | 2850, 3050, 3080 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3046 |
| AccI | GTMKAC | 1 cut(s) | 2478 |
| AccII | CGCG | 1 cut(s) | 1296 |
| AciI | CCGC | 5 cut(s) | 29, 32, 703, 1350, 3430 |
| AclWI | GGATC | 7 cut(s) | 1052, 1610, 2046, 2274, 2700, 3095, 3108 |
| AcoI | YGGCCR | 2 cut(s) | 195, 847 |
| AcuI | CTGAAG | 5 cut(s) | 32, 1392, 2385, 2588, 2688 |
| AdeI | CACNNNGTG | 1 cut(s) | 3046 |
| AfaI | GTAC | 9 cut(s) | 739, 957, 1002, 1224, 1413, 1888, 2413, 2952, 3153 |
| AfeI | AGCGCT | 1 cut(s) | 2398 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 20, 204, 1373, 2836, 3046, 3172 |
| AflII | CTTAAG | 2 cut(s) | 2513, 3095 |
| AflIII | ACRYGT | 1 cut(s) | 2054 |
| AjiI | CACGTC | 1 cut(s) | 2989 |
| AjnI | CCWGG | 8 cut(s) | 159, 438, 811, 1313, 2026, 2133, 3103, 3189 |
| Alw21I | GWGCWC | 5 cut(s) | 75, 883, 1017, 2704, 3028 |
| Alw26I | GTCTC | 3 cut(s) | 880, 1268, 1905 |
| AlwI | GGATC | 7 cut(s) | 1052, 1610, 2046, 2274, 2700, 3095, 3108 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 407, 2225 |
| Aor51HI | AGCGCT | 1 cut(s) | 2398 |
| AoxI | GGCC | 5 cut(s) | 40, 195, 417, 847, 1193 |
| AseI | ATTAAT | 2 cut(s) | 486, 1338 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 9, 602, 775, 3401 |
| AspLEI | GCGC | 3 cut(s) | 1998, 2050, 2399 |
| AspS9I | GGNCC | 5 cut(s) | 40, 789, 815, 1194, 2839 |
| AsuHPI | GGTGA | 5 cut(s) | 318, 771, 2096, 2177, 2969 |
| AsuII | TTCGAA | 1 cut(s) | 229 |
| AvaII | GGWCC | 3 cut(s) | 789, 815, 2839 |
| AxyI | CCTNAGG | 2 cut(s) | 330, 675 |
| BaeGI | GKGCMC | 1 cut(s) | 619 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2501, 2534 |
| BalI | TGGCCA | 2 cut(s) | 197, 849 |
| BamHI | GGATCC | 1 cut(s) | 3100 |
| BanII | GRGCYC | 3 cut(s) | 75, 3028, 3080 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 590, 622 |
| BauI | CACGAG | 2 cut(s) | 618, 1902 |
| BbsI | GAAGAC | 3 cut(s) | 605, 2801, 2966 |
| Bbv12I | GWGCWC | 5 cut(s) | 75, 883, 1017, 2704, 3028 |
| BbvCI | CCTCAGC | 1 cut(s) | 117 |
| BccI | CCATC | 8 cut(s) | 74, 529, 532, 749, 1026, 1872, 2531, 2988 |
| BceAI | ACGGC | 2 cut(s) | 1604, 2947 |
| BciT130I | CCWGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| BcoDI | GTCTC | 3 cut(s) | 880, 1268, 1905 |
| BfaI | CTAG | 8 cut(s) | 549, 587, 1307, 1392, 1527, 2462, 2555, 2954 |
| BfmI | CTRYAG | 7 cut(s) | 111, 216, 2042, 2493, 2763, 3087, 3155 |
| BfoI | RGCGCY | 2 cut(s) | 2051, 2400 |
| BfrI | CTTAAG | 2 cut(s) | 2513, 3095 |
| BfuAI | ACCTGC | 3 cut(s) | 2850, 3050, 3080 |
| BglII | AGATCT | 1 cut(s) | 2737 |
| BmcAI | AGTACT | 1 cut(s) | 3153 |
| Bme1390I | CCNGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| Bme18I | GGWCC | 3 cut(s) | 789, 815, 2839 |
| BmgBI | CACGTC | 1 cut(s) | 2989 |
| BmgT120I | GGNCC | 5 cut(s) | 40, 789, 815, 1194, 2839 |
| BmiI | GGNNCC | 3 cut(s) | 979, 3102, 3140 |
| BmrFI | CCNGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| BmrI | ACTGGG | 2 cut(s) | 736, 1671 |
| BmsI | GCATC | 9 cut(s) | 84, 613, 1057, 1101, 1448, 1487, 1835, 2255, 3199 |
| BmuI | ACTGGG | 2 cut(s) | 736, 1671 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1122 |
| BpiI | GAAGAC | 3 cut(s) | 605, 2801, 2966 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 647, 679 |
| BpmI | CTGGAG | 4 cut(s) | 1912, 2049, 2393, 2693 |
| Bpu10I | CCTNAGC | 2 cut(s) | 117, 2562 |
| Bpu14I | TTCGAA | 1 cut(s) | 229 |
| BpuEI | CTTGAG | 4 cut(s) | 200, 886, 2251, 2492 |
| BsaAI | YACGTR | 2 cut(s) | 2699, 3046 |
| BsaJI | CCNNGG | 2 cut(s) | 360, 1491 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2688, 2718 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 20, 204, 1373, 2836, 3046, 3172 |
| Bse118I | RCCGGY | 2 cut(s) | 2356, 3135 |
| Bse1I | ACTGG | 3 cut(s) | 731, 847, 1666 |
| Bse21I | CCTNAGG | 2 cut(s) | 330, 675 |
| Bse3DI | GCAATG | 7 cut(s) | 565, 1140, 1869, 2328, 2872, 2879, 3317 |
| BseBI | CCWGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| BseDI | CCNNGG | 2 cut(s) | 360, 1491 |
| BseGI | GGATG | 5 cut(s) | 1478, 1501, 1756, 2542, 2753 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 20, 204, 1373, 2836, 3046, 3172 |
| BseMI | GCAATG | 7 cut(s) | 565, 1140, 1869, 2328, 2872, 2879, 3317 |
| BseNI | ACTGG | 3 cut(s) | 731, 847, 1666 |
| BseRI | GAGGAG | 2 cut(s) | 2696, 2814 |
| BseSI | GKGCMC | 1 cut(s) | 619 |
| BseYI | CCCAGC | 3 cut(s) | 150, 612, 1284 |
| BsgI | GTGCAG | 7 cut(s) | 491, 673, 827, 924, 2102, 3078, 3222 |
| Bsh1236I | CGCG | 1 cut(s) | 1296 |
| BshFI | GGCC | 5 cut(s) | 42, 197, 419, 849, 1195 |
| BsiHKAI | GWGCWC | 5 cut(s) | 75, 883, 1017, 2704, 3028 |
| BsiSI | CCGG | 3 cut(s) | 571, 2357, 3136 |
| BslFI | GGGAC | 1 cut(s) | 555 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 20, 204, 1373, 2836, 3046, 3172 |
| BsmAI | GTCTC | 3 cut(s) | 880, 1268, 1905 |
| BsmFI | GGGAC | 1 cut(s) | 555 |
| BsmI | GAATGC | 4 cut(s) | 61, 453, 698, 1360 |
| BsnI | GGCC | 5 cut(s) | 42, 197, 419, 849, 1195 |
| Bsp119I | TTCGAA | 1 cut(s) | 229 |
| Bsp1286I | GDGCHC | 7 cut(s) | 75, 619, 883, 1017, 2704, 3028, 3080 |
| Bsp1407I | TGTACA | 4 cut(s) | 955, 1000, 1411, 1886 |
| Bsp143I | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| BspACI | CCGC | 5 cut(s) | 29, 32, 703, 1350, 3430 |
| BspANI | GGCC | 5 cut(s) | 42, 197, 419, 849, 1195 |
| BspFNI | CGCG | 1 cut(s) | 1296 |
| BspHI | TCATGA | 2 cut(s) | 559, 1251 |
| BspLI | GGNNCC | 3 cut(s) | 979, 3102, 3140 |
| BspMAI | CTGCAG | 6 cut(s) | 115, 220, 2046, 2497, 3091, 3159 |
| BspMI | ACCTGC | 3 cut(s) | 2850, 3050, 3080 |
| BspPI | GGATC | 7 cut(s) | 1052, 1610, 2046, 2274, 2700, 3095, 3108 |
| BspQI | GCTCTTC | 1 cut(s) | 3219 |
| BspT104I | TTCGAA | 1 cut(s) | 229 |
| BspTI | CTTAAG | 2 cut(s) | 2513, 3095 |
| BsrDI | GCAATG | 7 cut(s) | 565, 1140, 1869, 2328, 2872, 2879, 3317 |
| BsrFI | RCCGGY | 2 cut(s) | 2356, 3135 |
| BsrGI | TGTACA | 4 cut(s) | 955, 1000, 1411, 1886 |
| BsrI | ACTGG | 3 cut(s) | 731, 847, 1666 |
| BssAI | RCCGGY | 2 cut(s) | 2356, 3135 |
| BssECI | CCNNGG | 2 cut(s) | 360, 1491 |
| BssMI | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| BssSI | CACGAG | 2 cut(s) | 618, 1902 |
| BssT1I | CCWWGG | 1 cut(s) | 1491 |
| Bst2BI | CACGAG | 2 cut(s) | 618, 1902 |
| Bst2UI | CCWGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| Bst4CI | ACNGT | 6 cut(s) | 960, 982, 1050, 1121, 1150, 2917 |
| Bst6I | CTCTTC | 2 cut(s) | 1266, 3219 |
| BstAFI | CTTAAG | 2 cut(s) | 2513, 3095 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 623, 3209 |
| BstAUI | TGTACA | 4 cut(s) | 955, 1000, 1411, 1886 |
| BstBAI | YACGTR | 2 cut(s) | 2699, 3046 |
| BstBI | TTCGAA | 1 cut(s) | 229 |
| BstC8I | GCNNGC | 9 cut(s) | 44, 75, 79, 389, 1294, 2046, 2369, 2395, 3282 |
| BstDSI | CCRYGG | 1 cut(s) | 360 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3170 |
| BstF5I | GGATG | 5 cut(s) | 1478, 1501, 1756, 2542, 2753 |
| BstFNI | CGCG | 1 cut(s) | 1296 |
| BstH2I | RGCGCY | 2 cut(s) | 2051, 2400 |
| BstHHI | GCGC | 3 cut(s) | 1998, 2050, 2399 |
| BstKTI | GATC | 8 cut(s) | 1060, 1618, 2041, 2269, 2695, 2740, 3103, 3364 |
| BstMAI | GTCTC | 3 cut(s) | 880, 1268, 1905 |
| BstMBI | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| BstNI | CCWGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| BstNSI | RCATGY | 5 cut(s) | 320, 1670, 2058, 2777, 3086 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1122 |
| BstSCI | CCNGG | 8 cut(s) | 159, 438, 811, 1313, 2026, 2133, 3103, 3189 |
| BstSFI | CTRYAG | 7 cut(s) | 111, 216, 2042, 2493, 2763, 3087, 3155 |
| BstSLI | GKGCMC | 1 cut(s) | 619 |
| BstUI | CGCG | 1 cut(s) | 1296 |
| BstV2I | GAAGAC | 3 cut(s) | 605, 2801, 2966 |
| BstX2I | RGATCY | 5 cut(s) | 2038, 2266, 2692, 2737, 3100 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2740 |
| BstYI | RGATCY | 5 cut(s) | 2038, 2266, 2692, 2737, 3100 |
| Bsu36I | CCTNAGG | 2 cut(s) | 330, 675 |
| BsuRI | GGCC | 5 cut(s) | 42, 197, 419, 849, 1195 |
| BtgI | CCRYGG | 1 cut(s) | 360 |
| BtgZI | GCGATG | 1 cut(s) | 551 |
| BtrI | CACGTC | 1 cut(s) | 2989 |
| BtsCI | GGATG | 5 cut(s) | 1478, 1501, 1756, 2542, 2753 |
| BtsI | GCAGTG | 4 cut(s) | 690, 3205, 3268, 3329 |
| BtsIMutI | CAGTG | 7 cut(s) | 690, 881, 1055, 2012, 3205, 3268, 3329 |
| BveI | ACCTGC | 3 cut(s) | 2850, 3050, 3080 |
| Cac8I | GCNNGC | 9 cut(s) | 44, 75, 79, 389, 1294, 2046, 2369, 2395, 3282 |
| CaiI | CAGNNNCTG | 2 cut(s) | 407, 2225 |
| CciI | TCATGA | 2 cut(s) | 559, 1251 |
| CfoI | GCGC | 3 cut(s) | 1998, 2050, 2399 |
| Cfr10I | RCCGGY | 2 cut(s) | 2356, 3135 |
| Cfr13I | GGNCC | 5 cut(s) | 40, 789, 815, 1194, 2839 |
| CsiI | ACCWGGT | 1 cut(s) | 3189 |
| Csp6I | GTAC | 9 cut(s) | 738, 956, 1001, 1223, 1412, 1887, 2412, 2951, 3152 |
| CviQI | GTAC | 9 cut(s) | 738, 956, 1001, 1223, 1412, 1887, 2412, 2951, 3152 |
| DpnI | GATC | 8 cut(s) | 1059, 1617, 2040, 2268, 2694, 2739, 3102, 3363 |
| DpnII | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| DraI | TTTAAA | 2 cut(s) | 1450, 2323 |
| DraIII | CACNNNGTG | 1 cut(s) | 3046 |
| EaeI | YGGCCR | 2 cut(s) | 195, 847 |
| Eam1104I | CTCTTC | 2 cut(s) | 1266, 3219 |
| EarI | CTCTTC | 2 cut(s) | 1266, 3219 |
| EciI | GGCGGA | 2 cut(s) | 47, 692 |
| Ecl136II | GAGCTC | 2 cut(s) | 73, 3026 |
| Eco130I | CCWWGG | 1 cut(s) | 1491 |
| Eco147I | AGGCCT | 1 cut(s) | 419 |
| Eco24I | GRGCYC | 3 cut(s) | 75, 3028, 3080 |
| Eco32I | GATATC | 2 cut(s) | 1300, 2637 |
| Eco47I | GGWCC | 3 cut(s) | 789, 815, 2839 |
| Eco47III | AGCGCT | 1 cut(s) | 2398 |
| Eco53kI | GAGCTC | 2 cut(s) | 73, 3026 |
| Eco57I | CTGAAG | 5 cut(s) | 32, 1392, 2385, 2588, 2688 |
| Eco81I | CCTNAGG | 2 cut(s) | 330, 675 |
| EcoICRI | GAGCTC | 2 cut(s) | 73, 3026 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3170 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1194 |
| EcoRI | GAATTC | 1 cut(s) | 103 |
| EcoRII | CCWGG | 8 cut(s) | 159, 438, 811, 1313, 2026, 2133, 3103, 3189 |
| EcoRV | GATATC | 2 cut(s) | 1300, 2637 |
| EcoT14I | CCWWGG | 1 cut(s) | 1491 |
| EcoT22I | ATGCAT | 4 cut(s) | 63, 99, 1011, 3319 |
| EcoT38I | GRGCYC | 3 cut(s) | 75, 3028, 3080 |
| ErhI | CCWWGG | 1 cut(s) | 1491 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 404, 436, 1867, 1899, 2303, 2335 |
| FaqI | GGGAC | 1 cut(s) | 555 |
| FauI | CCCGC | 1 cut(s) | 1343 |
| FauNDI | CATATG | 1 cut(s) | 99 |
| FblI | GTMKAC | 1 cut(s) | 2478 |
| FokI | GGATG | 5 cut(s) | 1465, 1508, 1743, 2549, 2740 |
| FriOI | GRGCYC | 3 cut(s) | 75, 3028, 3080 |
| FspAI | RTGCGCAY | 1 cut(s) | 1997 |
| FspBI | CTAG | 8 cut(s) | 549, 587, 1307, 1392, 1527, 2462, 2555, 2954 |
| FspI | TGCGCA | 1 cut(s) | 1997 |
| GlaI | GCGC | 3 cut(s) | 1997, 2049, 2398 |
| GsaI | CCCAGC | 3 cut(s) | 154, 616, 1288 |
| GsuI | CTGGAG | 4 cut(s) | 1912, 2049, 2393, 2693 |
| HaeII | RGCGCY | 2 cut(s) | 2051, 2400 |
| HaeIII | GGCC | 5 cut(s) | 42, 197, 419, 849, 1195 |
| HapII | CCGG | 3 cut(s) | 571, 2357, 3136 |
| HhaI | GCGC | 3 cut(s) | 1998, 2050, 2399 |
| Hin6I | GCGC | 3 cut(s) | 1996, 2048, 2397 |
| HinP1I | GCGC | 3 cut(s) | 1996, 2048, 2397 |
| HincII | GTYRAC | 1 cut(s) | 2652 |
| HindII | GTYRAC | 1 cut(s) | 2652 |
| HpaII | CCGG | 3 cut(s) | 571, 2357, 3136 |
| HphI | GGTGA | 5 cut(s) | 318, 771, 2096, 2177, 2969 |
| Hpy166II | GTNNAC | 8 cut(s) | 54, 436, 1572, 2104, 2414, 2479, 2652, 3236 |
| Hpy8I | GTNNAC | 8 cut(s) | 54, 436, 1572, 2104, 2414, 2479, 2652, 3236 |
| Hpy99I | CGWCG | 1 cut(s) | 1121 |
| HpyAV | CCTTC | 7 cut(s) | 899, 1367, 1481, 1676, 2029, 3116, 3152 |
| HpyCH4III | ACNGT | 6 cut(s) | 960, 982, 1050, 1121, 1150, 2917 |
| HpyCH4IV | ACGT | 4 cut(s) | 339, 2698, 2988, 3045 |
| HpySE526I | ACGT | 4 cut(s) | 339, 2698, 2988, 3045 |
| HspAI | GCGC | 3 cut(s) | 1996, 2048, 2397 |
| Kzo9I | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| LguI | GCTCTTC | 1 cut(s) | 3219 |
| LmnI | GCTCC | 5 cut(s) | 878, 971, 1281, 1514, 2718 |
| LweI | GCATC | 9 cut(s) | 84, 613, 1057, 1101, 1448, 1487, 1835, 2255, 3199 |
| MabI | ACCWGGT | 1 cut(s) | 3189 |
| MaeI | CTAG | 8 cut(s) | 549, 587, 1307, 1392, 1527, 2462, 2555, 2954 |
| MaeII | ACGT | 4 cut(s) | 339, 2698, 2988, 3045 |
| MalI | GATC | 8 cut(s) | 1059, 1617, 2040, 2268, 2694, 2739, 3102, 3363 |
| MboI | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| MfeI | CAATTG | 2 cut(s) | 371, 1536 |
| MflI | RGATCY | 5 cut(s) | 2038, 2266, 2692, 2737, 3100 |
| MhlI | GDGCHC | 7 cut(s) | 75, 619, 883, 1017, 2704, 3028, 3080 |
| MlsI | TGGCCA | 2 cut(s) | 197, 849 |
| MluNI | TGGCCA | 2 cut(s) | 197, 849 |
| MlyI | GAGTC | 7 cut(s) | 139, 656, 665, 768, 1454, 1839, 2498 |
| MmeI | TCCRAC | 2 cut(s) | 1643, 2817 |
| Mox20I | TGGCCA | 2 cut(s) | 197, 849 |
| Mph1103I | ATGCAT | 4 cut(s) | 63, 99, 1011, 3319 |
| MroXI | GAANNNNTTC | 4 cut(s) | 9, 602, 775, 3401 |
| MscI | TGGCCA | 2 cut(s) | 197, 849 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1991, 2097, 3322 |
| Msp20I | TGGCCA | 2 cut(s) | 197, 849 |
| MspA1I | CMGCKG | 4 cut(s) | 110, 116, 221, 1370 |
| MspCI | CTTAAG | 2 cut(s) | 2513, 3095 |
| MspI | CCGG | 3 cut(s) | 571, 2357, 3136 |
| MspR9I | CCNGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| MunI | CAATTG | 2 cut(s) | 371, 1536 |
| Mva1269I | GAATGC | 4 cut(s) | 61, 453, 698, 1360 |
| MvaI | CCWGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| MvnI | CGCG | 1 cut(s) | 1296 |
| NdeI | CATATG | 1 cut(s) | 99 |
| NdeII | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| NlaIV | GGNNCC | 3 cut(s) | 979, 3102, 3140 |
| NmeAIII | GCCGAG | 1 cut(s) | 644 |
| NmuCI | GTSAC | 5 cut(s) | 132, 637, 2129, 2276, 2886 |
| NsbI | TGCGCA | 1 cut(s) | 1997 |
| NsiI | ATGCAT | 4 cut(s) | 63, 99, 1011, 3319 |
| NspI | RCATGY | 5 cut(s) | 320, 1670, 2058, 2777, 3086 |
| NspV | TTCGAA | 1 cut(s) | 229 |
| PagI | TCATGA | 2 cut(s) | 559, 1251 |
| PceI | AGGCCT | 1 cut(s) | 419 |
| PciI | ACATGT | 1 cut(s) | 2054 |
| PciSI | GCTCTTC | 1 cut(s) | 3219 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2994 |
| PctI | GAATGC | 4 cut(s) | 61, 453, 698, 1360 |
| PdmI | GAANNNNTTC | 4 cut(s) | 9, 602, 775, 3401 |
| PfeI | GAWTC | 9 cut(s) | 497, 776, 1705, 2120, 2439, 2452, 2759, 3340, 3423 |
| PflFI | GACNNNGTC | 1 cut(s) | 3191 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3046 |
| PfoI | TCCNGGA | 1 cut(s) | 2026 |
| PleI | GAGTC | 7 cut(s) | 139, 656, 664, 767, 1454, 1839, 2497 |
| PpsI | GAGTC | 7 cut(s) | 139, 656, 664, 767, 1454, 1839, 2497 |
| Ppu21I | YACGTR | 2 cut(s) | 2699, 3046 |
| PscI | ACATGT | 1 cut(s) | 2054 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1122 |
| PshBI | ATTAAT | 2 cut(s) | 486, 1338 |
| Psp124BI | GAGCTC | 2 cut(s) | 75, 3028 |
| Psp6I | CCWGG | 8 cut(s) | 159, 438, 811, 1313, 2026, 2133, 3103, 3189 |
| PspFI | CCCAGC | 3 cut(s) | 150, 612, 1284 |
| PspGI | CCWGG | 8 cut(s) | 159, 438, 811, 1313, 2026, 2133, 3103, 3189 |
| PspN4I | GGNNCC | 3 cut(s) | 979, 3102, 3140 |
| PspPI | GGNCC | 5 cut(s) | 40, 789, 815, 1194, 2839 |
| PstI | CTGCAG | 6 cut(s) | 115, 220, 2046, 2497, 3091, 3159 |
| PstNI | CAGNNNCTG | 2 cut(s) | 407, 2225 |
| PsuI | RGATCY | 5 cut(s) | 2038, 2266, 2692, 2737, 3100 |
| PsyI | GACNNNGTC | 1 cut(s) | 3191 |
| PvuII | CAGCTG | 4 cut(s) | 110, 116, 221, 1370 |
| RsaI | GTAC | 9 cut(s) | 739, 957, 1002, 1224, 1413, 1888, 2413, 2952, 3153 |
| RsaNI | GTAC | 9 cut(s) | 738, 956, 1001, 1223, 1412, 1887, 2412, 2951, 3152 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1991, 2097, 3322 |
| SacI | GAGCTC | 2 cut(s) | 75, 3028 |
| SapI | GCTCTTC | 1 cut(s) | 3219 |
| Sau3AI | GATC | 8 cut(s) | 1057, 1615, 2038, 2266, 2692, 2737, 3100, 3361 |
| Sau96I | GGNCC | 5 cut(s) | 40, 789, 815, 1194, 2839 |
| ScaI | AGTACT | 1 cut(s) | 3153 |
| SchI | GAGTC | 7 cut(s) | 139, 656, 665, 768, 1454, 1839, 2498 |
| ScrFI | CCNGG | 8 cut(s) | 161, 440, 813, 1315, 2028, 2135, 3105, 3191 |
| SduI | GDGCHC | 7 cut(s) | 75, 619, 883, 1017, 2704, 3028, 3080 |
| SexAI | ACCWGGT | 1 cut(s) | 3189 |
| SfaNI | GCATC | 9 cut(s) | 84, 613, 1057, 1101, 1448, 1487, 1835, 2255, 3199 |
| SfcI | CTRYAG | 7 cut(s) | 111, 216, 2042, 2493, 2763, 3087, 3155 |
| SfuI | TTCGAA | 1 cut(s) | 229 |
| SinI | GGWCC | 3 cut(s) | 789, 815, 2839 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1991, 2097, 3322 |
| SmlI | CTYRAG | 6 cut(s) | 179, 865, 2230, 2471, 2513, 3095 |
| SmoI | CTYRAG | 6 cut(s) | 179, 865, 2230, 2471, 2513, 3095 |
| SseBI | AGGCCT | 1 cut(s) | 419 |
| SsiI | CCGC | 5 cut(s) | 29, 32, 703, 1350, 3430 |
| SspI | AATATT | 1 cut(s) | 2626 |
| SspMI | CTAG | 8 cut(s) | 549, 587, 1307, 1392, 1527, 2462, 2555, 2954 |
| SstI | GAGCTC | 2 cut(s) | 75, 3028 |
| StuI | AGGCCT | 1 cut(s) | 419 |
| StyD4I | CCNGG | 8 cut(s) | 159, 438, 811, 1313, 2026, 2133, 3103, 3189 |
| StyI | CCWWGG | 1 cut(s) | 1491 |
| TaaI | ACNGT | 6 cut(s) | 960, 982, 1050, 1121, 1150, 2917 |
| TaiI | ACGT | 4 cut(s) | 342, 2701, 2991, 3048 |
| TaqI | TCGA | 8 cut(s) | 69, 229, 495, 1026, 1116, 1843, 3302, 3418 |
| TatI | WGTACW | 7 cut(s) | 737, 955, 1000, 1411, 1886, 2950, 3151 |
| TauI | GCSGC | 1 cut(s) | 32 |
| TfiI | GAWTC | 9 cut(s) | 497, 776, 1705, 2120, 2439, 2452, 2759, 3340, 3423 |
| TscAI | CASTG | 7 cut(s) | 697, 888, 1055, 2019, 3205, 3268, 3329 |
| TseFI | GTSAC | 5 cut(s) | 132, 637, 2129, 2276, 2886 |
| Tsp45I | GTSAC | 5 cut(s) | 132, 637, 2129, 2276, 2886 |
| TspGWI | ACGGA | 1 cut(s) | 349 |
| TspRI | CASTG | 7 cut(s) | 697, 888, 1055, 2019, 3205, 3268, 3329 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3191 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3046 |
| Vha464I | CTTAAG | 2 cut(s) | 2513, 3095 |
| VpaK11BI | GGWCC | 3 cut(s) | 789, 815, 2839 |
| VspI | ATTAAT | 2 cut(s) | 486, 1338 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3170 |
| XbaI | TCTAGA | 1 cut(s) | 2554 |
| XceI | RCATGY | 5 cut(s) | 320, 1670, 2058, 2777, 3086 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 446, 1489 |
| XmiI | GTMKAC | 1 cut(s) | 2478 |
| XmnI | GAANNNNTTC | 4 cut(s) | 9, 602, 775, 3401 |
| XspI | CTAG | 8 cut(s) | 549, 587, 1307, 1392, 1527, 2462, 2555, 2954 |
| ZrmI | AGTACT | 1 cut(s) | 3153 |
| Zsp2I | ATGCAT | 4 cut(s) | 63, 99, 1011, 3319 |