Rroxscaffold_6G00427530

histone lysine demethylation

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
48098161 .. 48109750
11590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427530.1

Sequence Viewer

Length: 3495 bp
ATGCAAGGGTTTGCGGAGAGAGGTAATTCAGGGGACTTGGCCCAGCTCCAGTCCACCATGCACGCCATTGAGCTTGCCTGCAATTCTATTCAGATGCAGATGAATTTGGGTGCTGCCGAAGCAACTATTTTGGCACTTTCCCAGACTCCTCAACCATACCAGACATGTAAATTCATTCTTGAGAACTCTCAGGTTGCAAATGCAAGGTTTCAGGCTGCAGCTGCAATTCGTGATGCAGCTATTAGAGAATGGGGTTTTCTTAGCTCAGATGAAAAGAGAAGCATGATTAGTTTTTGTCTTTGTTTTGTTATGCAACATGCTAATTCACCTGAGGGCTATGTCCAAGCAAAGGTGTCCTCTGTGGCTGCTCAATTATTGAAAAGGGGTTGGCTTGATTTCTCAGCTGCTGAGAAGGAGGAATTTTTCTATCAGGTAAACCAGGCTGTTTATGGCATTCATGGTGTAGATGTGCAGTTTGCTGGAATTAATTTCCTGGAATCTCTGGTGTCTGAATTTTCTCCATCTACATCTAGTGCGATGGGTCTACCGAGAGAGTTTCATGATCATTGCAAAAAGTCGTTGGAGCTAGACCACTTGAAGACTTTCTATTGCTGGGCACGAGATGCTGCATCAAGTGTTACAAATAGAATAGTTGAGTCTGACTCTGCGGTACCGGAGGTTAAAGTCTGTACTGCTGCATTGCGTCTCATGCTTCAAATCCTGAACTGGGAATTCAGTCCAATTGCAGTCCCTCTTGGAGGCAGAATGGGTACTGATTCACCTAAGAGATCTGAGTGTAACCAAGTCCAGCCTGGACCTGCTTGGCGTGAAGTTTTGGTTAGTAGTGGCCATATAGGCTGGCTCCTGAGCTTATATGCGGCACTGAGACAGAAGTTTTCTTGTGAAGGTTATTGGCTCGATTGCCCTATTGCTGTCTCTGCTAGAAAGCTAATAGTACAGTTCTGCTCCTTAACAGGAACCATATTTTCATCTGTACAAATGCATGAACACCATCTCCTCCAACTTCTTTCTGGAATAATACAGTGGATTGATCCTCCTGATGCTGTTTCTAGAGCGATTGAATGTGGAAAAAGTGAAAGCGAGATGCTTGATGGTTGTCGTGCTTTGTTGTCAATTGCAACTGTTGCAACTCCCTCAACATTTGACCAGCTCTTAAAATCAACAAGGTCCTTTGGTACTCTTACCTTGTTATGCATATTGATGTCTGAAGTTGTCAAGAACCTAATGACTAACAACTCTGAAGAAGAGACTTGGAGCTGGGAGGCACGCGATATCTTACTAGACACTTGGACTGCACTCCTTGTGCCAGTAAATAGGAATGGTGGAAATGCATCGCTTCCACCTGAAGGGAAAAATGCTACAGCCAGTTTATTTGCCTTGATTGTACAGGCTGAACTGAAAGCTGCTTCTGCATCAGCATTTAAAGATGATGACTCTGACTACCTTCAGGCTTCTATCTCGGCCTTGGATGAAAGGTTAAGCTCCTATGCTCTTATTGGTAGAACAGCAATTGAGGTCACAGTACCTTTTCTCACAGGACTGTTTTCTGAGCGCTTTGAACGGCTTAATCAGGGCAGGGGCATTATCGATCCAACTGAAACTTTAGAGGAACTTTACTCATTGCTACTTATCACTGGGCACTTAATCGCTGATGAAGGGGAGGGGAGAAACACCTCTGGTATGATTCTCAGTTACTGTGTTGTTCAGATTCCAAATGCTATACGATTTCATCTTCCGCACAATCTGGAAGCAGAGATGCACCCTGTTGTCATCCTTTGTGGCTCAATCATAAGGTTTGCCGAGGAAAGTTTAAAACCAGAAATGAGAGCGTCGGTTTTCAGTCCCCGACTCATGGAGGAAGCTGCAACTGTGATAAGTTCTGTTTGTTTTGATTCAAGATTGAGAATTGGAGCTGTCATATGGTTCCTTGCTAGATGGTCTTGTACGTACCTAATGTCTCCTGAAGAAAGTCGAGACTCCACAACTGCCTTGCTCAAATTTTTTGGACAACACGGTCAAGGAAAATTGGTTCTGGACATAATTGTTCGCATATCCTTGACAGCACTGGTGTCATATCCTGGAGAAAAGTACCTGCAGGCTCTTACTTGTTTCCAGCTACTTCATGCACTTGTTCAGCAAAAACATATTTGCATTCATCTTGTTGCTTTGGATTCATGGCGTGACCTTGCAAATGCTTTTGCTAATGAAAAAACTTTGTTCTTGTTAAATACAGCTCACCAGCGTTCACTTGCTCAAACACTTGTTCGGTCAGCTTCTGGTATGAGAAATTCAGAGGCATCAAACCAGTATGTAAGGGATCTCATGGGTCATATGGCAACATATCTTGTTGAAATCACAAGCAAGAATGACTTTAAAAACATTGCTCAACAACCAGATATCATCCTGCCGGTCAGTTGCTTGTTGGAGAGGCTTCGTGGGGCTGCCAGTGCCTCTGAACCTCGTTTACAGAAAGCAATTTATGAGCTTGGATTCTCTGCAATGAATCCTGTTTTGATTCTTCTTGAGGTTTACAAACATGAGTTTGTAGTTGATTGGGTGGATGGACAAATAAGCTATCTAGAGGCTCAGGAAACTGCTGTTGTTGTCAATTTCTGCATGAGTTTGCTTCGTCTTTATTCATCAAACAATATTGGCAAGATATCAATAACTCTTTCAAGCAGCTTAAGCACTGAAGCAAAGACTGAGAAGTACAAGGATTTGCGTGCTCTACTCCAGCTCCTTTCAAGCCTTTGTTCCAAAGATTTGGTTGATTTTTCATCAGATTCCACTGAGACAGAGAGCACAAACATATCTCAGGTCGTTTACTTCGGTCTTCATATAGTTACTCCTCTAATATCGTTGGAGCTGCTGAAATACCCCAAGTTCTGTTTTGATTACTTCTCATTGCTCTCCCATTTGTTGGAGGTCTATCCTGAAACAGTTGCACAACTAAGCAACGAAGCCTTTTCTCATGTACTAGGAACTCTTGATTTTGGTCTTCACCATCAGGATGCCGAAGTTGTTGATATGTGTCTCAGAGCTTTAAGAGCTCTTGCTTCTTATCACTATTTGGAAACTAGTGCGGGTAAAGTAGGCTTGGGCTCACATGCTGCAGGCCTCAAGGATCCTGGTGGAAATTTTCAGGAAGGCATTTTGAGCCGGTTCCTTCGTTCGGTACTGCAATTACTCCTTTTTGGGGATTATAGTCCTGACCTGGTCAGCGGGGCAGCAGACGCTCTTCTTCCGTTGATACTTTGTGAACAAAGCCTATACCAGAAATTAGGCAATGAGTTGATAGAGAGGCAGACAAATGAAACATTGAAATCAAGACTATCAAATGCGTTGCGGTCTCTCACAAGTGCGAACCAGCTTTCATCTACCATTGATCGTAAAAATTGTCAAAGATTCAGGAAAAATCTTAGTAACTTCTTGGTTAATGTTAGAGGTTTTTGCGAACAATGTGATATGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1164

Amino Acids

128.98

Weight (kDa)

5.57

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2034
Acc36I ACCTGC 2 cut(s) 826, 2121
Acc65I GGTACC 1 cut(s) 670
AccB1I GGYRCC 1 cut(s) 670
AccB7I CCANNNNNTGG 1 cut(s) 2941
AccI GTMKAC 1 cut(s) 544
AccII CGCG 1 cut(s) 1290
AciI CCGC 7 cut(s) 14, 668, 878, 1757, 3104, 3243, 3367
AclWI GGATC 5 cut(s) 1046, 1604, 2346, 3140, 3153
AcoI YGGCCR 1 cut(s) 847
AcsI RAATTY 8 cut(s) 103, 170, 419, 512, 731, 2018, 2308, 3157
AcuI CTGAAG 6 cut(s) 1248, 1281, 1386, 1451, 2004, 2733
AfeI AGCGCT 1 cut(s) 1574
AfiI CCNNNNNNNGG 8 cut(s) 349, 727, 758, 1367, 1873, 2941, 3193, 3217
AflII CTTAAG 1 cut(s) 2704
AflIII ACRYGT 1 cut(s) 164
AhlI ACTAGT 1 cut(s) 3098
AjnI CCWGG 6 cut(s) 438, 492, 811, 2098, 3148, 3234
AloI GAACNNNNNNTCC 4 cut(s) 999, 1031, 2034, 2066
Alw21I GWGCWC 3 cut(s) 2749, 2825, 3073
Alw26I GTCTC 9 cut(s) 710, 880, 940, 1262, 1983, 1989, 2807, 3059, 3375
AlwI GGATC 5 cut(s) 1046, 1604, 2346, 3140, 3153
AlwNI CAGNNNCTG 3 cut(s) 407, 1716, 2297
Aor51HI AGCGCT 1 cut(s) 1574
AoxI GGCC 4 cut(s) 39, 847, 1482, 3136
ApoI RAATTY 8 cut(s) 103, 170, 419, 512, 731, 2018, 2308, 3157
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 602
Asp718I GGTACC 1 cut(s) 670
AspLEI GCGC 1 cut(s) 1575
AspS9I GGNCC 3 cut(s) 40, 815, 1188
AsuHPI GGTGA 4 cut(s) 318, 771, 2249, 3014
AvaII GGWCC 2 cut(s) 815, 1188
AxyI CCTNAGG 1 cut(s) 330
BaeGI GKGCMC 2 cut(s) 619, 1662
BalI TGGCCA 1 cut(s) 849
BamHI GGATCC 1 cut(s) 3145
BanI GGYRCC 1 cut(s) 670
BanII GRGCYC 2 cut(s) 3073, 3125
BauI CACGAG 1 cut(s) 618
BbsI GAAGAC 3 cut(s) 605, 2846, 3011
Bbv12I GWGCWC 3 cut(s) 2749, 2825, 3073
BccI CCATC 7 cut(s) 529, 532, 1020, 1106, 1950, 2576, 3033
BceAI ACGGC 1 cut(s) 1598
BciT130I CCWGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 9 cut(s) 710, 880, 940, 1262, 1983, 1989, 2807, 3059, 3375
BcuI ACTAGT 1 cut(s) 3098
BfaI CTAG 9 cut(s) 531, 587, 942, 1071, 1301, 1953, 2600, 2999, 3099
BfmI CTRYAG 4 cut(s) 216, 1380, 2114, 3132
BfoI RGCGCY 1 cut(s) 1576
BfrI CTTAAG 1 cut(s) 2704
BfuAI ACCTGC 2 cut(s) 826, 2121
BglI GCCNNNNNGGC 1 cut(s) 855
BglII AGATCT 1 cut(s) 788
Bme1390I CCNGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
Bme18I GGWCC 2 cut(s) 815, 1188
BmgT120I GGNCC 3 cut(s) 40, 815, 1188
BmiI GGNNCC 6 cut(s) 672, 863, 979, 1946, 3147, 3185
BmrFI CCNGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
BmrI ACTGGG 2 cut(s) 736, 1665
BmuI ACTGGG 2 cut(s) 736, 1665
BpiI GAAGAC 3 cut(s) 605, 2846, 3011
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 3 cut(s) 32, 2121, 2738
Bpu10I CCTNAGC 2 cut(s) 866, 2607
BpuEI CTTGAG 3 cut(s) 200, 2564, 3125
Bsa29I ATCGAT 1 cut(s) 1608
BsaAI YACGTR 1 cut(s) 1968
BsaI GGTCTC 1 cut(s) 3375
BsaJI CCNNGG 2 cut(s) 1485, 1821
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 4 cut(s) 999, 1029, 2742, 2772
Bsc4I CCNNNNNNNGG 8 cut(s) 349, 727, 758, 1367, 1873, 2941, 3193, 3217
Bse118I RCCGGY 2 cut(s) 2428, 3180
Bse1I ACTGG 8 cut(s) 49, 731, 1328, 1386, 1660, 2091, 2326, 2466
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 7 cut(s) 565, 698, 1640, 2400, 2526, 2924, 3313
BseBI CCWGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
BseCI ATCGAT 1 cut(s) 1608
BseDI CCNNGG 2 cut(s) 1485, 1821
BseGI GGATG 5 cut(s) 1495, 1791, 2421, 2587, 3037
BseLI CCNNNNNNNGG 8 cut(s) 349, 727, 758, 1367, 1873, 2941, 3193, 3217
BseMI GCAATG 7 cut(s) 565, 698, 1640, 2400, 2526, 2924, 3313
BseNI ACTGG 8 cut(s) 49, 731, 1328, 1386, 1660, 2091, 2326, 2466
BseRI GAGGAG 3 cut(s) 138, 1007, 2859
BseSI GKGCMC 2 cut(s) 619, 1662
BseYI CCCAGC 3 cut(s) 42, 612, 1278
BsgI GTGCAG 2 cut(s) 491, 1299
Bsh1236I CGCG 1 cut(s) 1290
BshFI GGCC 4 cut(s) 41, 849, 1484, 3138
BshNI GGYRCC 1 cut(s) 670
BshVI ATCGAT 1 cut(s) 1608
BsiHKAI GWGCWC 3 cut(s) 2749, 2825, 3073
BsiSI CCGG 3 cut(s) 674, 2429, 3181
BslFI GGGAC 3 cut(s) 47, 734, 1848
BslI CCNNNNNNNGG 8 cut(s) 349, 727, 758, 1367, 1873, 2941, 3193, 3217
BsmAI GTCTC 9 cut(s) 710, 880, 940, 1262, 1983, 1989, 2807, 3059, 3375
BsmBI CGTCTC 1 cut(s) 710
BsmFI GGGAC 3 cut(s) 47, 734, 1848
BsmI GAATGC 2 cut(s) 453, 2172
BsnI GGCC 4 cut(s) 41, 849, 1484, 3138
Bso31I GGTCTC 1 cut(s) 3375
Bsp1286I GDGCHC 6 cut(s) 619, 1662, 2749, 2825, 3073, 3125
Bsp1407I TGTACA 2 cut(s) 994, 1405
Bsp143I GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
BspACI CCGC 7 cut(s) 14, 668, 878, 1757, 3104, 3243, 3367
BspANI GGCC 4 cut(s) 41, 849, 1484, 3138
BspDI ATCGAT 1 cut(s) 1608
BspFNI CGCG 1 cut(s) 1290
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 6 cut(s) 672, 863, 979, 1946, 3147, 3185
BspMAI CTGCAG 3 cut(s) 220, 2118, 3136
BspMI ACCTGC 2 cut(s) 826, 2121
BspPI GGATC 5 cut(s) 1046, 1604, 2346, 3140, 3153
BspQI GCTCTTC 1 cut(s) 3264
BspT107I GGYRCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 2704
BspTNI GGTCTC 1 cut(s) 3375
BsrDI GCAATG 7 cut(s) 565, 698, 1640, 2400, 2526, 2924, 3313
BsrFI RCCGGY 2 cut(s) 2428, 3180
BsrGI TGTACA 2 cut(s) 994, 1405
BsrI ACTGG 8 cut(s) 49, 731, 1328, 1386, 1660, 2091, 2326, 2466
BssAI RCCGGY 2 cut(s) 2428, 3180
BssECI CCNNGG 2 cut(s) 1485, 1821
BssMI GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 1485
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
Bst4CI ACNGT 9 cut(s) 960, 1044, 1144, 1543, 1563, 1718, 1891, 2036, 2962
Bst6I CTCTTC 2 cut(s) 1260, 3264
BstAFI CTTAAG 1 cut(s) 2704
BstAPI GCANNNNNTGC 2 cut(s) 623, 1145
BstAUI TGTACA 2 cut(s) 994, 1405
BstBAI YACGTR 1 cut(s) 1968
BstC8I GCNNGC 8 cut(s) 63, 75, 79, 860, 1288, 2118, 2745, 3136
BstENI CCTNNNNNAGG 1 cut(s) 756
BstF5I GGATG 5 cut(s) 1495, 1791, 2421, 2587, 3037
BstFNI CGCG 1 cut(s) 1290
BstH2I RGCGCY 1 cut(s) 1576
BstHHI GCGC 1 cut(s) 1575
BstKTI GATC 7 cut(s) 565, 791, 1054, 1612, 2341, 3148, 3409
BstMAI GTCTC 9 cut(s) 710, 880, 940, 1262, 1983, 1989, 2807, 3059, 3375
BstMBI GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
BstNI CCWGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
BstNSI RCATGY 3 cut(s) 168, 320, 3131
BstSCI CCNGG 6 cut(s) 438, 492, 811, 2098, 3148, 3234
BstSFI CTRYAG 4 cut(s) 216, 1380, 2114, 3132
BstSLI GKGCMC 2 cut(s) 619, 1662
BstSNI TACGTA 1 cut(s) 1968
BstUI CGCG 1 cut(s) 1290
BstV2I GAAGAC 3 cut(s) 605, 2846, 3011
BstX2I RGATCY 3 cut(s) 788, 2338, 3145
BstXI CCANNNNNNTGG 1 cut(s) 2785
BstYI RGATCY 3 cut(s) 788, 2338, 3145
Bsu15I ATCGAT 1 cut(s) 1608
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 4 cut(s) 41, 849, 1484, 3138
BsuTUI ATCGAT 1 cut(s) 1608
BtgZI GCGATG 2 cut(s) 551, 1338
BtsCI GGATG 5 cut(s) 1495, 1791, 2421, 2587, 3037
BtsIMutI CAGTG 7 cut(s) 881, 1049, 1653, 2084, 2473, 2709, 2808
BveI ACCTGC 2 cut(s) 826, 2121
Cac8I GCNNGC 8 cut(s) 63, 75, 79, 860, 1288, 2118, 2745, 3136
CaiI CAGNNNCTG 3 cut(s) 407, 1716, 2297
CciI TCATGA 1 cut(s) 559
CfoI GCGC 1 cut(s) 1575
Cfr10I RCCGGY 2 cut(s) 2428, 3180
Cfr13I GGNCC 3 cut(s) 40, 815, 1188
ClaI ATCGAT 1 cut(s) 1608
CseI GACGC 3 cut(s) 692, 1839, 3263
CsiI ACCWGGT 1 cut(s) 3234
DpnI GATC 7 cut(s) 564, 790, 1053, 1611, 2340, 3147, 3408
DpnII GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
DraI TTTAAA 3 cut(s) 1444, 1833, 2395
DrdI GACNNNNNNGTC 1 cut(s) 2034
DseDI GACNNNNNNGTC 1 cut(s) 2034
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 2 cut(s) 1260, 3264
EarI CTCTTC 2 cut(s) 1260, 3264
Ecl136II GAGCTC 1 cut(s) 3071
Eco105I TACGTA 1 cut(s) 1968
Eco130I CCWWGG 1 cut(s) 1485
Eco147I AGGCCT 1 cut(s) 3138
Eco24I GRGCYC 2 cut(s) 3073, 3125
Eco31I GGTCTC 1 cut(s) 3375
Eco32I GATATC 3 cut(s) 1294, 2419, 2682
Eco47I GGWCC 2 cut(s) 815, 1188
Eco47III AGCGCT 1 cut(s) 1574
Eco53kI GAGCTC 1 cut(s) 3071
Eco57I CTGAAG 6 cut(s) 1248, 1281, 1386, 1451, 2004, 2733
Eco81I CCTNAGG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 3071
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoO109I RGGNCCY 1 cut(s) 1188
EcoRI GAATTC 1 cut(s) 731
EcoRII CCWGG 6 cut(s) 438, 492, 811, 2098, 3148, 3234
EcoRV GATATC 3 cut(s) 1294, 2419, 2682
EcoT14I CCWWGG 1 cut(s) 1485
EcoT22I ATGCAT 3 cut(s) 1005, 1217, 1354
EcoT38I GRGCYC 2 cut(s) 3073, 3125
ErhI CCWWGG 1 cut(s) 1485
Esp3I CGTCTC 1 cut(s) 710
FalI AAGNNNNNCTT 2 cut(s) 2375, 2407
FaqI GGGAC 3 cut(s) 47, 734, 1848
FauI CCCGC 2 cut(s) 3097, 3236
FauNDI CATATG 2 cut(s) 1940, 2352
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 544
FokI GGATG 5 cut(s) 1502, 1778, 2408, 2594, 3044
FriOI GRGCYC 2 cut(s) 3073, 3125
FspBI CTAG 9 cut(s) 531, 587, 942, 1071, 1301, 1953, 2600, 2999, 3099
GlaI GCGC 1 cut(s) 1574
GsaI CCCAGC 3 cut(s) 46, 616, 1282
GsuI CTGGAG 3 cut(s) 32, 2121, 2738
HaeII RGCGCY 1 cut(s) 1576
HaeIII GGCC 4 cut(s) 41, 849, 1484, 3138
HapII CCGG 3 cut(s) 674, 2429, 3181
HgaI GACGC 3 cut(s) 692, 1839, 3263
HhaI GCGC 1 cut(s) 1575
Hin6I GCGC 1 cut(s) 1573
HinP1I GCGC 1 cut(s) 1573
HpaII CCGG 3 cut(s) 674, 2429, 3181
HphI GGTGA 4 cut(s) 318, 771, 2249, 3014
Hpy166II GTNNAC 8 cut(s) 54, 436, 545, 2267, 2486, 2551, 2845, 3281
Hpy8I GTNNAC 8 cut(s) 54, 436, 545, 2267, 2486, 2551, 2845, 3281
Hpy99I CGWCG 1 cut(s) 1855
HpyAV CCTTC 7 cut(s) 406, 899, 1361, 1475, 1670, 3161, 3197
HpyCH4III ACNGT 9 cut(s) 960, 1044, 1144, 1543, 1563, 1718, 1891, 2036, 2962
HpyCH4IV ACGT 1 cut(s) 1967
HpySE526I ACGT 1 cut(s) 1967
HspAI GCGC 1 cut(s) 1573
KpnI GGTACC 1 cut(s) 674
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
LguI GCTCTTC 1 cut(s) 3264
LmnI GCTCC 9 cut(s) 51, 583, 867, 971, 1275, 1508, 1931, 2763, 2884
MabI ACCWGGT 1 cut(s) 3234
MaeI CTAG 9 cut(s) 531, 587, 942, 1071, 1301, 1953, 2600, 2999, 3099
MaeII ACGT 1 cut(s) 1967
MaeIII GTNAC 7 cut(s) 637, 797, 1537, 1712, 2201, 2863, 3443
MalI GATC 7 cut(s) 564, 790, 1053, 1611, 2340, 3147, 3408
MboI GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
MfeI CAATTG 3 cut(s) 741, 1134, 1530
MflI RGATCY 3 cut(s) 788, 2338, 3145
MhlI GDGCHC 6 cut(s) 619, 1662, 2749, 2825, 3073, 3125
MlsI TGGCCA 1 cut(s) 849
MluNI TGGCCA 1 cut(s) 849
MlyI GAGTC 6 cut(s) 139, 656, 665, 1448, 1863, 1991
MmeI TCCRAC 6 cut(s) 561, 1045, 1637, 2424, 2862, 2922
Mox20I TGGCCA 1 cut(s) 849
Mph1103I ATGCAT 3 cut(s) 1005, 1217, 1354
MroXI GAANNNNTTC 1 cut(s) 602
MscI TGGCCA 1 cut(s) 849
MslI CAYNNNNRTG 2 cut(s) 1220, 3030
Msp20I TGGCCA 1 cut(s) 849
MspA1I CMGCKG 3 cut(s) 221, 404, 3243
MspCI CTTAAG 1 cut(s) 2704
MspI CCGG 3 cut(s) 674, 2429, 3181
MspR9I CCNGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
MunI CAATTG 3 cut(s) 741, 1134, 1530
Mva1269I GAATGC 2 cut(s) 453, 2172
MvaI CCWGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
MvnI CGCG 1 cut(s) 1290
NdeI CATATG 2 cut(s) 1940, 2352
NdeII GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
NlaIV GGNNCC 6 cut(s) 672, 863, 979, 1946, 3147, 3185
NmeAIII GCCGAG 2 cut(s) 1460, 1846
NmuCI GTSAC 2 cut(s) 1537, 2201
NsiI ATGCAT 3 cut(s) 1005, 1217, 1354
NspI RCATGY 3 cut(s) 168, 320, 3131
PagI TCATGA 1 cut(s) 559
PceI AGGCCT 1 cut(s) 3138
PciI ACATGT 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 3264
PctI GAATGC 2 cut(s) 453, 2172
PdmI GAANNNNTTC 1 cut(s) 602
PflFI GACNNNGTC 1 cut(s) 3236
PflMI CCANNNNNTGG 1 cut(s) 2941
PfoI TCCNGGA 2 cut(s) 492, 2098
PleI GAGTC 6 cut(s) 139, 656, 664, 1448, 1863, 1991
PpsI GAGTC 6 cut(s) 139, 656, 664, 1448, 1863, 1991
Ppu21I YACGTR 1 cut(s) 1968
PpuMI RGGWCCY 1 cut(s) 1188
PscI ACATGT 1 cut(s) 164
PshBI ATTAAT 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 3073
Psp5II RGGWCCY 1 cut(s) 1188
Psp6I CCWGG 6 cut(s) 438, 492, 811, 2098, 3148, 3234
PspFI CCCAGC 3 cut(s) 42, 612, 1278
PspGI CCWGG 6 cut(s) 438, 492, 811, 2098, 3148, 3234
PspN4I GGNNCC 6 cut(s) 672, 863, 979, 1946, 3147, 3185
PspPI GGNCC 3 cut(s) 40, 815, 1188
PspPPI RGGWCCY 1 cut(s) 1188
PsrI GAACNNNNNNTAC 2 cut(s) 2469, 2501
PstI CTGCAG 3 cut(s) 220, 2118, 3136
PstNI CAGNNNCTG 3 cut(s) 407, 1716, 2297
PsuI RGATCY 3 cut(s) 788, 2338, 3145
PsyI GACNNNGTC 1 cut(s) 3236
PvuII CAGCTG 2 cut(s) 221, 404
RseI CAYNNNNRTG 2 cut(s) 1220, 3030
SacI GAGCTC 1 cut(s) 3073
SapI GCTCTTC 1 cut(s) 3264
Sau3AI GATC 7 cut(s) 562, 788, 1051, 1609, 2338, 3145, 3406
Sau96I GGNCC 3 cut(s) 40, 815, 1188
SbfI CCTGCAGG 1 cut(s) 2118
SchI GAGTC 6 cut(s) 139, 656, 665, 1448, 1863, 1991
ScrFI CCNGG 6 cut(s) 440, 494, 813, 2100, 3150, 3236
SdaI CCTGCAGG 1 cut(s) 2118
SduI GDGCHC 6 cut(s) 619, 1662, 2749, 2825, 3073, 3125
SexAI ACCWGGT 1 cut(s) 3234
SfcI CTRYAG 4 cut(s) 216, 1380, 2114, 3132
SinI GGWCC 2 cut(s) 815, 1188
SmiMI CAYNNNNRTG 2 cut(s) 1220, 3030
SmlI CTYRAG 4 cut(s) 179, 2543, 2704, 3140
SmoI CTYRAG 4 cut(s) 179, 2543, 2704, 3140
SnaBI TACGTA 1 cut(s) 1968
SpeI ACTAGT 1 cut(s) 3098
Sse8387I CCTGCAGG 1 cut(s) 2118
SseBI AGGCCT 1 cut(s) 3138
SsiI CCGC 7 cut(s) 14, 668, 878, 1757, 3104, 3243, 3367
SspI AATATT 1 cut(s) 2671
SspMI CTAG 9 cut(s) 531, 587, 942, 1071, 1301, 1953, 2600, 2999, 3099
SstI GAGCTC 1 cut(s) 3073
StuI AGGCCT 1 cut(s) 3138
StyD4I CCNGG 6 cut(s) 438, 492, 811, 2098, 3148, 3234
StyI CCWWGG 1 cut(s) 1485
TaaI ACNGT 9 cut(s) 960, 1044, 1144, 1543, 1563, 1718, 1891, 2036, 2962
TaiI ACGT 1 cut(s) 1970
TaqI TCGA 3 cut(s) 918, 1608, 1993
TaqII GACCGA 2 cut(s) 2277, 2840
TatI WGTACW 6 cut(s) 689, 955, 994, 1405, 2730, 2995
TauI GCSGC 1 cut(s) 881
TscAI CASTG 7 cut(s) 888, 1049, 1660, 2091, 2473, 2716, 2815
TseFI GTSAC 2 cut(s) 1537, 2201
Tsp45I GTSAC 2 cut(s) 1537, 2201
TspGWI ACGGA 1 cut(s) 3255
TspRI CASTG 7 cut(s) 888, 1049, 1660, 2091, 2473, 2716, 2815
Tth111I GACNNNGTC 1 cut(s) 3236
Van91I CCANNNNNTGG 1 cut(s) 2941
Vha464I CTTAAG 1 cut(s) 2704
VpaK11BI GGWCC 2 cut(s) 815, 1188
VspI ATTAAT 1 cut(s) 486
XagI CCTNNNNNAGG 1 cut(s) 756
XapI RAATTY 8 cut(s) 103, 170, 419, 512, 731, 2018, 2308, 3157
XbaI TCTAGA 2 cut(s) 1070, 2599
XceI RCATGY 3 cut(s) 168, 320, 3131
XcmI CCANNNNNNNNNTGG 3 cut(s) 446, 809, 1028
XmiI GTMKAC 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 9 cut(s) 531, 587, 942, 1071, 1301, 1953, 2600, 2999, 3099
Zsp2I ATGCAT 3 cut(s) 1005, 1217, 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.