histone lysine demethylation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04490 AT3G04490 AT3G04490 AT3G04490 |
| fragaria_vesca | FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 FvH4_6g01900 |
| malus_domestica | MD04G1230100.v1.1 |
| prunus_persica | Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 Prupe.7G018700_v2.0.a1 |
| pyrus_communis | pycom04g20400 |
| rosa_chinensis | RchiOBHm_Chr3g0449631 |
| rosa_laevigata | RLG00000025813 |
| rosa_multiflora | Rmu_sc0009629.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00427530 |
| rosa_rugosa | Rorug02G0622600 |
| rosa_samantha | Rh3AG020400 Rh3BG021100 Rh3CG019600 Rh3DG020900 |
| rosa_wichuraiana | Rw3G001680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1872 |
| Acc36I | ACCTGC | 2 cut(s) | 853, 1959 |
| Acc65I | GGTACC | 1 cut(s) | 697 |
| AccB1I | GGYRCC | 1 cut(s) | 697 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2806 |
| AccBSI | CCGCTC | 3 cut(s) | 3381, 3387, 3393 |
| AccI | GTMKAC | 3 cut(s) | 571, 3373, 3400 |
| AccII | CGCG | 3 cut(s) | 1317, 3333, 3467 |
| AclI | AACGTT | 1 cut(s) | 2238 |
| AclWI | GGATC | 5 cut(s) | 810, 1073, 2184, 3005, 3018 |
| AcoI | YGGCCR | 1 cut(s) | 3711 |
| AcsI | RAATTY | 9 cut(s) | 130, 197, 446, 539, 758, 1856, 2146, 3022, 3749 |
| AcuI | CTGAAG | 8 cut(s) | 1275, 1308, 1413, 1478, 1842, 2598, 3504, 3561 |
| AcvI | CACGTG | 1 cut(s) | 3730 |
| AfeI | AGCGCT | 1 cut(s) | 1601 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 33, 376, 754, 1394, 1765, 2806, 3082 |
| AflII | CTTAAG | 2 cut(s) | 2423, 2569 |
| AflIII | ACRYGT | 1 cut(s) | 191 |
| AhlI | ACTAGT | 2 cut(s) | 869, 2963 |
| AjnI | CCWGG | 7 cut(s) | 465, 519, 838, 891, 1936, 3013, 3099 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1026, 1058, 1872, 1904 |
| Alw21I | GWGCWC | 6 cut(s) | 102, 2346, 2614, 2690, 2938, 3534 |
| Alw26I | GTCTC | 9 cut(s) | 737, 781, 907, 1289, 1821, 1827, 2281, 2672, 2924 |
| AlwI | GGATC | 5 cut(s) | 810, 1073, 2184, 3005, 3018 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 248, 434, 692, 2135 |
| Aor51HI | AGCGCT | 1 cut(s) | 1601 |
| AoxI | GGCC | 5 cut(s) | 66, 1509, 3001, 3611, 3711 |
| ApoI | RAATTY | 9 cut(s) | 130, 197, 446, 539, 758, 1856, 2146, 3022, 3749 |
| AseI | ATTAAT | 1 cut(s) | 513 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 629 |
| Asp718I | GGTACC | 1 cut(s) | 697 |
| AspLEI | GCGC | 4 cut(s) | 1602, 3234, 3335, 3469 |
| AspS9I | GGNCC | 4 cut(s) | 67, 842, 1215, 3592 |
| AsuC2I | CCSGG | 1 cut(s) | 3577 |
| AsuHPI | GGTGA | 8 cut(s) | 345, 798, 2087, 2879, 3251, 3300, 3653, 3670 |
| AvaII | GGWCC | 3 cut(s) | 842, 1215, 3592 |
| AxyI | CCTNAGG | 1 cut(s) | 357 |
| BaeGI | GKGCMC | 1 cut(s) | 646 |
| BalI | TGGCCA | 1 cut(s) | 3713 |
| BamHI | GGATCC | 1 cut(s) | 3010 |
| BanI | GGYRCC | 1 cut(s) | 697 |
| BanII | GRGCYC | 4 cut(s) | 102, 2346, 2938, 2990 |
| BauI | CACGAG | 1 cut(s) | 645 |
| BbrPI | CACGTG | 1 cut(s) | 3730 |
| BbsI | GAAGAC | 3 cut(s) | 632, 2711, 2876 |
| Bbv12I | GWGCWC | 6 cut(s) | 102, 2346, 2614, 2690, 2938, 3534 |
| BccI | CCATC | 7 cut(s) | 556, 559, 1047, 1133, 1788, 2441, 2898 |
| BceAI | ACGGC | 3 cut(s) | 1625, 3224, 3351 |
| BciT130I | CCWGG | 7 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101 |
| BcnI | CCSGG | 1 cut(s) | 3577 |
| BcoDI | GTCTC | 9 cut(s) | 737, 781, 907, 1289, 1821, 1827, 2281, 2672, 2924 |
| BcuI | ACTAGT | 2 cut(s) | 869, 2963 |
| BfmI | CTRYAG | 6 cut(s) | 1067, 1407, 1952, 2403, 2997, 3114 |
| BfoI | RGCGCY | 1 cut(s) | 1603 |
| BfrI | CTTAAG | 2 cut(s) | 2423, 2569 |
| BfuAI | ACCTGC | 2 cut(s) | 853, 1959 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3581 |
| BlpI | GCTNAGC | 1 cut(s) | 3444 |
| BmcAI | AGTACT | 1 cut(s) | 3063 |
| Bme1390I | CCNGG | 8 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101, 3577 |
| Bme18I | GGWCC | 3 cut(s) | 842, 1215, 3592 |
| BmgT120I | GGNCC | 4 cut(s) | 67, 842, 1215, 3592 |
| BmiI | GGNNCC | 7 cut(s) | 699, 890, 1006, 1784, 3012, 3050, 3594 |
| BmrFI | CCNGG | 8 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101, 3577 |
| BmrI | ACTGGG | 1 cut(s) | 763 |
| BmuI | ACTGGG | 1 cut(s) | 763 |
| BpiI | GAAGAC | 3 cut(s) | 632, 2711, 2876 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 674, 706 |
| BpmI | CTGGAG | 4 cut(s) | 59, 1959, 2603, 3297 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2472 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3444 |
| BpuEI | CTTGAG | 5 cut(s) | 227, 2402, 2990, 3512, 3758 |
| BpuMI | CCSGG | 1 cut(s) | 3577 |
| BsaAI | YACGTR | 2 cut(s) | 1806, 3730 |
| BsaJI | CCNNGG | 3 cut(s) | 892, 1512, 1713 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1026, 1056, 2607, 2637 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 33, 376, 754, 1394, 1765, 2806, 3082 |
| Bse118I | RCCGGY | 3 cut(s) | 2266, 2969, 3045 |
| Bse1I | ACTGG | 6 cut(s) | 76, 758, 1355, 1929, 2164, 2304 |
| Bse21I | CCTNAGG | 1 cut(s) | 357 |
| Bse3DI | GCAATG | 5 cut(s) | 592, 725, 2364, 2789, 3178 |
| BseBI | CCWGG | 7 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101 |
| BseDI | CCNNGG | 3 cut(s) | 892, 1512, 1713 |
| BseGI | GGATG | 6 cut(s) | 1522, 1683, 2259, 2452, 2902, 3276 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 33, 376, 754, 1394, 1765, 2806, 3082 |
| BseMI | GCAATG | 5 cut(s) | 592, 725, 2364, 2789, 3178 |
| BseNI | ACTGG | 6 cut(s) | 76, 758, 1355, 1929, 2164, 2304 |
| BseRI | GAGGAG | 5 cut(s) | 165, 2724, 3239, 3272, 3275 |
| BseSI | GKGCMC | 1 cut(s) | 646 |
| BseYI | CCCAGC | 4 cut(s) | 69, 639, 1305, 3412 |
| BsgI | GTGCAG | 2 cut(s) | 518, 1326 |
| Bsh1236I | CGCG | 3 cut(s) | 1317, 3333, 3467 |
| BshFI | GGCC | 5 cut(s) | 68, 1511, 3003, 3613, 3713 |
| BshNI | GGYRCC | 1 cut(s) | 697 |
| BsiHKAI | GWGCWC | 6 cut(s) | 102, 2346, 2614, 2690, 2938, 3534 |
| BsiSI | CCGG | 4 cut(s) | 2267, 2970, 3046, 3576 |
| BslFI | GGGAC | 3 cut(s) | 74, 1740, 3476 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 33, 376, 754, 1394, 1765, 2806, 3082 |
| BsmAI | GTCTC | 9 cut(s) | 737, 781, 907, 1289, 1821, 1827, 2281, 2672, 2924 |
| BsmBI | CGTCTC | 1 cut(s) | 737 |
| BsmFI | GGGAC | 3 cut(s) | 74, 1740, 3476 |
| BsmI | GAATGC | 2 cut(s) | 480, 2010 |
| BsnI | GGCC | 5 cut(s) | 68, 1511, 3003, 3613, 3713 |
| Bsp1286I | GDGCHC | 8 cut(s) | 102, 646, 2346, 2614, 2690, 2938, 2990, 3534 |
| Bsp1407I | TGTACA | 2 cut(s) | 1021, 1432 |
| Bsp143I | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3444 |
| BspANI | GGCC | 5 cut(s) | 68, 1511, 3003, 3613, 3713 |
| BspFNI | CGCG | 3 cut(s) | 1317, 3333, 3467 |
| BspHI | TCATGA | 1 cut(s) | 586 |
| BspLI | GGNNCC | 7 cut(s) | 699, 890, 1006, 1784, 3012, 3050, 3594 |
| BspMAI | CTGCAG | 4 cut(s) | 1956, 2407, 3001, 3118 |
| BspMI | ACCTGC | 2 cut(s) | 853, 1959 |
| BspPI | GGATC | 5 cut(s) | 810, 1073, 2184, 3005, 3018 |
| BspQI | GCTCTTC | 1 cut(s) | 3129 |
| BspT107I | GGYRCC | 1 cut(s) | 697 |
| BspTI | CTTAAG | 2 cut(s) | 2423, 2569 |
| BsrBI | CCGCTC | 3 cut(s) | 3381, 3387, 3393 |
| BsrDI | GCAATG | 5 cut(s) | 592, 725, 2364, 2789, 3178 |
| BsrFI | RCCGGY | 3 cut(s) | 2266, 2969, 3045 |
| BsrGI | TGTACA | 2 cut(s) | 1021, 1432 |
| BsrI | ACTGG | 6 cut(s) | 76, 758, 1355, 1929, 2164, 2304 |
| BssAI | RCCGGY | 3 cut(s) | 2266, 2969, 3045 |
| BssECI | CCNNGG | 3 cut(s) | 892, 1512, 1713 |
| BssMI | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| BssSI | CACGAG | 1 cut(s) | 645 |
| BssT1I | CCWWGG | 1 cut(s) | 1512 |
| Bst2BI | CACGAG | 1 cut(s) | 645 |
| Bst2UI | CCWGG | 7 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101 |
| Bst4CI | ACNGT | 9 cut(s) | 987, 1071, 1171, 1570, 1590, 1846, 1874, 2827, 3427 |
| Bst6I | CTCTTC | 3 cut(s) | 1287, 1389, 3129 |
| BstAFI | CTTAAG | 2 cut(s) | 2423, 2569 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 248, 650, 1172 |
| BstAUI | TGTACA | 2 cut(s) | 1021, 1432 |
| BstBAI | YACGTR | 2 cut(s) | 1806, 3730 |
| BstC8I | GCNNGC | 8 cut(s) | 90, 102, 887, 1315, 1956, 2610, 3001, 3582 |
| BstF5I | GGATG | 6 cut(s) | 1522, 1683, 2259, 2452, 2902, 3276 |
| BstFNI | CGCG | 3 cut(s) | 1317, 3333, 3467 |
| BstH2I | RGCGCY | 1 cut(s) | 1603 |
| BstHHI | GCGC | 4 cut(s) | 1602, 3234, 3335, 3469 |
| BstKTI | GATC | 6 cut(s) | 818, 1081, 2179, 3013, 3477, 3646 |
| BstMAI | GTCTC | 9 cut(s) | 737, 781, 907, 1289, 1821, 1827, 2281, 2672, 2924 |
| BstMBI | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| BstNI | CCWGG | 7 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101 |
| BstNSI | RCATGY | 3 cut(s) | 195, 347, 2996 |
| BstSCI | CCNGG | 8 cut(s) | 465, 519, 838, 891, 1936, 3013, 3099, 3575 |
| BstSFI | CTRYAG | 6 cut(s) | 1067, 1407, 1952, 2403, 2997, 3114 |
| BstSLI | GKGCMC | 1 cut(s) | 646 |
| BstSNI | TACGTA | 1 cut(s) | 1806 |
| BstUI | CGCG | 3 cut(s) | 1317, 3333, 3467 |
| BstV2I | GAAGAC | 3 cut(s) | 632, 2711, 2876 |
| BstX2I | RGATCY | 3 cut(s) | 815, 2176, 3010 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2650 |
| BstYI | RGATCY | 3 cut(s) | 815, 2176, 3010 |
| Bsu36I | CCTNAGG | 1 cut(s) | 357 |
| BsuRI | GGCC | 5 cut(s) | 68, 1511, 3003, 3613, 3713 |
| BtgZI | GCGATG | 1 cut(s) | 578 |
| BtsCI | GGATG | 6 cut(s) | 1522, 1683, 2259, 2452, 2902, 3276 |
| BtsIMutI | CAGTG | 7 cut(s) | 908, 1076, 1922, 2311, 2574, 2673, 3432 |
| BveI | ACCTGC | 2 cut(s) | 853, 1959 |
| Cac8I | GCNNGC | 8 cut(s) | 90, 102, 887, 1315, 1956, 2610, 3001, 3582 |
| CaiI | CAGNNNCTG | 4 cut(s) | 248, 434, 692, 2135 |
| CciI | TCATGA | 1 cut(s) | 586 |
| CfoI | GCGC | 4 cut(s) | 1602, 3234, 3335, 3469 |
| Cfr10I | RCCGGY | 3 cut(s) | 2266, 2969, 3045 |
| Cfr13I | GGNCC | 4 cut(s) | 67, 842, 1215, 3592 |
| CseI | GACGC | 4 cut(s) | 719, 1731, 3128, 3473 |
| CsiI | ACCWGGT | 1 cut(s) | 3099 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1402, 1437 |
| DpnI | GATC | 6 cut(s) | 817, 1080, 2178, 3012, 3476, 3645 |
| DpnII | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| DraI | TTTAAA | 3 cut(s) | 1471, 1725, 2233 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1872 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1872 |
| EaeI | YGGCCR | 1 cut(s) | 3711 |
| Eam1104I | CTCTTC | 3 cut(s) | 1287, 1389, 3129 |
| EarI | CTCTTC | 3 cut(s) | 1287, 1389, 3129 |
| EciI | GGCGGA | 2 cut(s) | 3226, 3233 |
| Ecl136II | GAGCTC | 3 cut(s) | 100, 2344, 2936 |
| Eco105I | TACGTA | 1 cut(s) | 1806 |
| Eco130I | CCWWGG | 1 cut(s) | 1512 |
| Eco147I | AGGCCT | 1 cut(s) | 3003 |
| Eco24I | GRGCYC | 4 cut(s) | 102, 2346, 2938, 2990 |
| Eco32I | GATATC | 3 cut(s) | 1321, 2257, 2547 |
| Eco47I | GGWCC | 3 cut(s) | 842, 1215, 3592 |
| Eco47III | AGCGCT | 1 cut(s) | 1601 |
| Eco53kI | GAGCTC | 3 cut(s) | 100, 2344, 2936 |
| Eco57I | CTGAAG | 8 cut(s) | 1275, 1308, 1413, 1478, 1842, 2598, 3504, 3561 |
| Eco72I | CACGTG | 1 cut(s) | 3730 |
| Eco81I | CCTNAGG | 1 cut(s) | 357 |
| EcoICRI | GAGCTC | 3 cut(s) | 100, 2344, 2936 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1215, 3592 |
| EcoRI | GAATTC | 1 cut(s) | 758 |
| EcoRII | CCWGG | 7 cut(s) | 465, 519, 838, 891, 1936, 3013, 3099 |
| EcoRV | GATATC | 3 cut(s) | 1321, 2257, 2547 |
| EcoT14I | CCWWGG | 1 cut(s) | 1512 |
| EcoT22I | ATGCAT | 3 cut(s) | 1032, 1244, 1381 |
| EcoT38I | GRGCYC | 4 cut(s) | 102, 2346, 2938, 2990 |
| ErhI | CCWWGG | 1 cut(s) | 1512 |
| Esp3I | CGTCTC | 1 cut(s) | 737 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2213, 2245 |
| FaqI | GGGAC | 3 cut(s) | 74, 1740, 3476 |
| FauI | CCCGC | 5 cut(s) | 3338, 3371, 3386, 3392, 3398 |
| FauNDI | CATATG | 3 cut(s) | 1778, 2190, 3433 |
| FblI | GTMKAC | 3 cut(s) | 571, 3373, 3400 |
| FokI | GGATG | 6 cut(s) | 1529, 1670, 2246, 2459, 2909, 3263 |
| FriOI | GRGCYC | 4 cut(s) | 102, 2346, 2938, 2990 |
| GlaI | GCGC | 4 cut(s) | 1601, 3233, 3334, 3468 |
| GsaI | CCCAGC | 4 cut(s) | 73, 643, 1309, 3416 |
| GsuI | CTGGAG | 4 cut(s) | 59, 1959, 2603, 3297 |
| HaeII | RGCGCY | 1 cut(s) | 1603 |
| HaeIII | GGCC | 5 cut(s) | 68, 1511, 3003, 3613, 3713 |
| HapII | CCGG | 4 cut(s) | 2267, 2970, 3046, 3576 |
| HgaI | GACGC | 4 cut(s) | 719, 1731, 3128, 3473 |
| HhaI | GCGC | 4 cut(s) | 1602, 3234, 3335, 3469 |
| Hin6I | GCGC | 4 cut(s) | 1600, 3232, 3333, 3467 |
| HinP1I | GCGC | 4 cut(s) | 1600, 3232, 3333, 3467 |
| HpaII | CCGG | 4 cut(s) | 2267, 2970, 3046, 3576 |
| HphI | GGTGA | 8 cut(s) | 345, 798, 2087, 2879, 3251, 3300, 3653, 3670 |
| Hpy99I | CGWCG | 2 cut(s) | 1747, 3372 |
| HpyAV | CCTTC | 9 cut(s) | 433, 926, 1388, 1502, 3026, 3062, 3496, 3547, 3708 |
| HpyCH4III | ACNGT | 9 cut(s) | 987, 1071, 1171, 1570, 1590, 1846, 1874, 2827, 3427 |
| HpyCH4IV | ACGT | 3 cut(s) | 1805, 2238, 3729 |
| HpySE526I | ACGT | 3 cut(s) | 1805, 2238, 3729 |
| HspAI | GCGC | 4 cut(s) | 1600, 3232, 3333, 3467 |
| KpnI | GGTACC | 1 cut(s) | 701 |
| Kzo9I | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| LguI | GCTCTTC | 1 cut(s) | 3129 |
| MabI | ACCWGGT | 1 cut(s) | 3099 |
| MaeII | ACGT | 3 cut(s) | 1805, 2238, 3729 |
| MaeIII | GTNAC | 7 cut(s) | 159, 664, 824, 865, 1564, 2039, 2728 |
| MalI | GATC | 6 cut(s) | 817, 1080, 2178, 3012, 3476, 3645 |
| MbiI | CCGCTC | 3 cut(s) | 3381, 3387, 3393 |
| MboI | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| MfeI | CAATTG | 4 cut(s) | 398, 768, 1161, 1557 |
| MflI | RGATCY | 3 cut(s) | 815, 2176, 3010 |
| MhlI | GDGCHC | 8 cut(s) | 102, 646, 2346, 2614, 2690, 2938, 2990, 3534 |
| MlsI | TGGCCA | 1 cut(s) | 3713 |
| MluNI | TGGCCA | 1 cut(s) | 3713 |
| MlyI | GAGTC | 8 cut(s) | 166, 683, 692, 1475, 1755, 1829, 2408, 3754 |
| MmeI | TCCRAC | 6 cut(s) | 588, 1509, 2262, 2727, 2787, 3292 |
| Mox20I | TGGCCA | 1 cut(s) | 3713 |
| Mph1103I | ATGCAT | 3 cut(s) | 1032, 1244, 1381 |
| MroXI | GAANNNNTTC | 1 cut(s) | 629 |
| MscI | TGGCCA | 1 cut(s) | 3713 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1247, 2895, 3768 |
| Msp20I | TGGCCA | 1 cut(s) | 3713 |
| MspA1I | CMGCKG | 3 cut(s) | 245, 431, 3108 |
| MspCI | CTTAAG | 2 cut(s) | 2423, 2569 |
| MspI | CCGG | 4 cut(s) | 2267, 2970, 3046, 3576 |
| MspR9I | CCNGG | 8 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101, 3577 |
| MunI | CAATTG | 4 cut(s) | 398, 768, 1161, 1557 |
| Mva1269I | GAATGC | 2 cut(s) | 480, 2010 |
| MvaI | CCWGG | 7 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101 |
| MvnI | CGCG | 3 cut(s) | 1317, 3333, 3467 |
| NciI | CCSGG | 1 cut(s) | 3577 |
| NdeI | CATATG | 3 cut(s) | 1778, 2190, 3433 |
| NdeII | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| NlaIV | GGNNCC | 7 cut(s) | 699, 890, 1006, 1784, 3012, 3050, 3594 |
| NmeAIII | GCCGAG | 2 cut(s) | 1487, 1738 |
| NmuCI | GTSAC | 3 cut(s) | 159, 1564, 2039 |
| NsiI | ATGCAT | 3 cut(s) | 1032, 1244, 1381 |
| NspI | RCATGY | 3 cut(s) | 195, 347, 2996 |
| PagI | TCATGA | 1 cut(s) | 586 |
| PceI | AGGCCT | 1 cut(s) | 3003 |
| PciI | ACATGT | 1 cut(s) | 191 |
| PciSI | GCTCTTC | 1 cut(s) | 3129 |
| PctI | GAATGC | 2 cut(s) | 480, 2010 |
| PdmI | GAANNNNTTC | 1 cut(s) | 629 |
| PflFI | GACNNNGTC | 1 cut(s) | 3101 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2806 |
| PfoI | TCCNGGA | 2 cut(s) | 519, 1936 |
| PleI | GAGTC | 8 cut(s) | 166, 683, 691, 1475, 1755, 1829, 2407, 3754 |
| PmaCI | CACGTG | 1 cut(s) | 3730 |
| PmlI | CACGTG | 1 cut(s) | 3730 |
| PpsI | GAGTC | 8 cut(s) | 166, 683, 691, 1475, 1755, 1829, 2407, 3754 |
| Ppu21I | YACGTR | 2 cut(s) | 1806, 3730 |
| PpuMI | RGGWCCY | 2 cut(s) | 1215, 3592 |
| PscI | ACATGT | 1 cut(s) | 191 |
| PshBI | ATTAAT | 1 cut(s) | 513 |
| Psp124BI | GAGCTC | 3 cut(s) | 102, 2346, 2938 |
| Psp1406I | AACGTT | 1 cut(s) | 2238 |
| Psp5II | RGGWCCY | 2 cut(s) | 1215, 3592 |
| Psp6I | CCWGG | 7 cut(s) | 465, 519, 838, 891, 1936, 3013, 3099 |
| PspCI | CACGTG | 1 cut(s) | 3730 |
| PspFI | CCCAGC | 4 cut(s) | 69, 639, 1305, 3412 |
| PspGI | CCWGG | 7 cut(s) | 465, 519, 838, 891, 1936, 3013, 3099 |
| PspN4I | GGNNCC | 7 cut(s) | 699, 890, 1006, 1784, 3012, 3050, 3594 |
| PspPI | GGNCC | 4 cut(s) | 67, 842, 1215, 3592 |
| PspPPI | RGGWCCY | 2 cut(s) | 1215, 3592 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2307, 2339 |
| PstI | CTGCAG | 4 cut(s) | 1956, 2407, 3001, 3118 |
| PstNI | CAGNNNCTG | 4 cut(s) | 248, 434, 692, 2135 |
| PsuI | RGATCY | 3 cut(s) | 815, 2176, 3010 |
| PsyI | GACNNNGTC | 1 cut(s) | 3101 |
| PvuII | CAGCTG | 2 cut(s) | 245, 431 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1247, 2895, 3768 |
| SacI | GAGCTC | 3 cut(s) | 102, 2346, 2938 |
| SapI | GCTCTTC | 1 cut(s) | 3129 |
| Sau3AI | GATC | 6 cut(s) | 815, 1078, 2176, 3010, 3474, 3643 |
| Sau96I | GGNCC | 4 cut(s) | 67, 842, 1215, 3592 |
| SbfI | CCTGCAGG | 1 cut(s) | 1956 |
| ScaI | AGTACT | 1 cut(s) | 3063 |
| SchI | GAGTC | 8 cut(s) | 166, 683, 692, 1475, 1755, 1829, 2408, 3754 |
| ScrFI | CCNGG | 8 cut(s) | 467, 521, 840, 893, 1938, 3015, 3101, 3577 |
| SdaI | CCTGCAGG | 1 cut(s) | 1956 |
| SduI | GDGCHC | 8 cut(s) | 102, 646, 2346, 2614, 2690, 2938, 2990, 3534 |
| SexAI | ACCWGGT | 1 cut(s) | 3099 |
| SfcI | CTRYAG | 6 cut(s) | 1067, 1407, 1952, 2403, 2997, 3114 |
| SinI | GGWCC | 3 cut(s) | 842, 1215, 3592 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1247, 2895, 3768 |
| SmlI | CTYRAG | 7 cut(s) | 206, 2381, 2423, 2569, 3005, 3491, 3737 |
| SmoI | CTYRAG | 7 cut(s) | 206, 2381, 2423, 2569, 3005, 3491, 3737 |
| SnaBI | TACGTA | 1 cut(s) | 1806 |
| SpeI | ACTAGT | 2 cut(s) | 869, 2963 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1956 |
| SseBI | AGGCCT | 1 cut(s) | 3003 |
| SspI | AATATT | 1 cut(s) | 2536 |
| SstI | GAGCTC | 3 cut(s) | 102, 2346, 2938 |
| StuI | AGGCCT | 1 cut(s) | 3003 |
| StyD4I | CCNGG | 8 cut(s) | 465, 519, 838, 891, 1936, 3013, 3099, 3575 |
| StyI | CCWWGG | 1 cut(s) | 1512 |
| TaaI | ACNGT | 9 cut(s) | 987, 1071, 1171, 1570, 1590, 1846, 1874, 2827, 3427 |
| TaiI | ACGT | 3 cut(s) | 1808, 2241, 3732 |
| TaqI | TCGA | 3 cut(s) | 945, 1831, 3691 |
| TaqII | GACCGA | 1 cut(s) | 2705 |
| TatI | WGTACW | 8 cut(s) | 107, 716, 982, 1021, 1432, 2595, 2860, 3061 |
| TauI | GCSGC | 3 cut(s) | 908, 3348, 3351 |
| TscAI | CASTG | 7 cut(s) | 915, 1076, 1929, 2311, 2581, 2680, 3432 |
| TseFI | GTSAC | 3 cut(s) | 159, 1564, 2039 |
| Tsp45I | GTSAC | 3 cut(s) | 159, 1564, 2039 |
| TspGWI | ACGGA | 1 cut(s) | 3120 |
| TspRI | CASTG | 7 cut(s) | 915, 1076, 1929, 2311, 2581, 2680, 3432 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3101 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2806 |
| Vha464I | CTTAAG | 2 cut(s) | 2423, 2569 |
| VpaK11BI | GGWCC | 3 cut(s) | 842, 1215, 3592 |
| VspI | ATTAAT | 1 cut(s) | 513 |
| XapI | RAATTY | 9 cut(s) | 130, 197, 446, 539, 758, 1856, 2146, 3022, 3749 |
| XbaI | TCTAGA | 2 cut(s) | 1097, 2464 |
| XceI | RCATGY | 3 cut(s) | 195, 347, 2996 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 473, 836, 1055 |
| XmiI | GTMKAC | 3 cut(s) | 571, 3373, 3400 |
| XmnI | GAANNNNTTC | 1 cut(s) | 629 |
| ZrmI | AGTACT | 1 cut(s) | 3063 |
| Zsp2I | ATGCAT | 3 cut(s) | 1032, 1244, 1381 |