Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014655

Physical Location & Seq

Genomic Coordinates Forward (+)

8538580 .. 8542476

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G048300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTGCAACCTCATCATCTTCCGGACTTTTCTTCTTGGCCCTCTCCCTCCTTGCTTGCTTTCCCTTCTGCAGTTGCCATTGTAGTAGTGTAAGTAATAAAAATGCAGAGGGTGGGATGATGAAAGGGATGTTTGTGTTTGGAAGTTCCTTGGTTGACAATGGCAACAATAACTTCTTGCCAAATTCTCTGGCCAGAGCTGACTACTTACCCTATGGAATTGATTTTCCTCTTGGGCCTTCTGGAAGGTTCACAAATGGCAGAAATGTTATTGACCTTCTTGTTGGCCATCTTAAGCTACCTTCCTTGATCCCAGCTTTTGCTGACCCCAAAACTAGAGGAAGCAAGATTGTTCATGGTGTCAACTTTGCTTCTGGTGCTTCTGGTATACTGGATGATACTGGCTCCTTAGCGGGCCACGTGATCAATCTGAACCAGCAAATTAGAAACTTTGAGGAGATAACGTTGCCAGAGTTAGAAACCCAACTAGGGTGCAGAAGCCATCAGTCACTTCCCAACTACTTGTTTGTGGTGGGAACTGGTGGAAACGATTACTCATTCAACTACTTTCTGAGGAGCTCCAACAAAAATGTCAGTCTGGAAATTTTTACTGCCAATCTAACTGCCTCTTTGTCCAGACAACTAAAGAAGTTGCACAGTTTGGGAGCTCGAAAATTTGTTGTGATGTCAGTAAATCCACTTGGGTGCAGTCCAGTGGTGAGGATGAACAGACCAACACACAATGGCTGCGTACAAAATATGAACCGGGCAGCTCACCTTTTCAATTCTCACTTGAAGTCTTTGGTGGATGTGATTAGGGCAGAGATGCCTGGCTCTTCTCCTGTATTTGTCAACTCCTACAAGATCATCAGGGACATTATCAAAAACCCTATCTCCAAAGGATTCAAAGATTCTAGCACTACCTGTTGTGAAGTGGCATCAATATCTGAAGGTGGAAATGGAATTTTATGCAAGAGGGGAGGGGAAGTGTGTGCAAACAGAAGCAGTCATGTGTTCTTCGATGGCTTGCATCCAACAGAAGCTGTAAACGTTCAAATAGCAACAAAGGCCTATGTCTCTTCTCTTAAAACTGAAGTTTATCCCACTAATATTGCACGAATGACCAAATCCAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

380

Amino Acids

40.9

Weight (kDa)

9.24

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12420
malus_domestica	MD10G1044500.v1.1
prunus_persica	Prupe.7G048300_v2.0.a1 Prupe.8G051400_v2.0.a1 Prupe.8G051400_v2.0.a1
pyrus_communis	pycom10g03120
rosa_chinensis	RchiOBHm_Chr6g0272561
rosa_laevigata	RLG00000013666
rosa_multiflora	Rmu_co8481641.1_g000001 Rmu_sc0003080.1_g000014
rosa_roxburghii	Rroxscaffold_7G00196120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh6AG186400 Rh6BG189500 Rh6CG187300 Rh6DG179000
rosa_wichuraiana	Rw6G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	388
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	1 cut(s)	413
AclI	AACGTT	2 cut(s)	464, 1050
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	2 cut(s)	192, 286
AcsI	RAATTY	4 cut(s)	184, 603, 674, 963
AcuI	CTGAAG	2 cut(s)	969, 1113
AcvI	CACGTG	1 cut(s)	421
AfaI	GTAC	1 cut(s)	753
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	562, 784, 796, 907, 1055
AjnI	CCWGG	1 cut(s)	829
AleI	CACNNNNGTG	1 cut(s)	703
AluBI	AGCT	7 cut(s)	200, 298, 317, 579, 668, 773, 1043
AluI	AGCT	7 cut(s)	200, 298, 317, 579, 668, 773, 1043
Alw21I	GWGCWC	2 cut(s)	581, 670
Alw26I	GTCTC	1 cut(s)	1081
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	1043
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	6 cut(s)	39, 192, 236, 286, 415, 1068
ApeKI	GCWGC	3 cut(s)	5, 747, 770
ApoI	RAATTY	4 cut(s)	184, 603, 674, 963
AspS9I	GGNCC	3 cut(s)	40, 236, 415
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	2 cut(s)	730, 767
BalI	TGGCCA	2 cut(s)	194, 288
BanII	GRGCYC	2 cut(s)	581, 670
BbrPI	CACGTG	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	581, 670
BbvI	GCAGC	2 cut(s)	734, 782
BccI	CCATC	3 cut(s)	297, 510, 1016
BciT130I	CCWGG	1 cut(s)	831
BclI	TGATCA	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	1 cut(s)	1081
BfaI	CTAG	4 cut(s)	336, 488, 915, 1138
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	293
BisI	GCNGC	3 cut(s)	6, 748, 771
BlsI	GCNGC	3 cut(s)	7, 749, 772
Bme1390I	CCNGG	2 cut(s)	767, 831
BmgT120I	GGNCC	3 cut(s)	40, 236, 415
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	767, 831
BmsI	GCATC	3 cut(s)	816, 947, 1039
Bpu10I	CCTNAGC	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	767
BsaAI	YACGTR	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	6 cut(s)	449, 479, 878, 908, 972, 1002
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	4 cut(s)	396, 406, 544, 713
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	831
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	6 cut(s)	123, 135, 400, 729, 814, 1030
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	4 cut(s)	396, 406, 544, 713
BseRI	GAGGAG	2 cut(s)	470, 589
BseXI	GCAGC	2 cut(s)	734, 782
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	2 cut(s)	514, 727
BshFI	GGCC	6 cut(s)	41, 194, 238, 288, 417, 1070
BsiHKAI	GWGCWC	2 cut(s)	581, 670
BsiSI	CCGG	2 cut(s)	24, 766
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	1 cut(s)	1081
BsmFI	GGGAC	1 cut(s)	887
BsnI	GGCC	6 cut(s)	41, 194, 238, 288, 417, 1070
Bsp1286I	GDGCHC	2 cut(s)	581, 670
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	309, 423, 864
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	6 cut(s)	41, 194, 238, 288, 417, 1070
BspCNI	CTCAG	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	406
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	841
BspTI	CTTAAG	1 cut(s)	293
BsrI	ACTGG	4 cut(s)	396, 406, 544, 713
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	309, 423, 864
BssNAI	GTATAC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	2 cut(s)	841, 1084
BstAFI	CTTAAG	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	58, 415, 1028
BstDEI	CTNAG	2 cut(s)	409, 572
BstF5I	GGATG	6 cut(s)	123, 135, 400, 729, 814, 1030
BstKTI	GATC	3 cut(s)	312, 426, 867
BstMAI	GTCTC	1 cut(s)	1081
BstMBI	GATC	3 cut(s)	309, 423, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 1067
BstNI	CCWGG	1 cut(s)	831
BstSCI	CCNGG	2 cut(s)	765, 829
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	734, 782
BstZ17I	GTATAC	1 cut(s)	389
BsuRI	GGCC	6 cut(s)	41, 194, 238, 288, 417, 1070
BtsCI	GGATG	6 cut(s)	123, 135, 400, 729, 814, 1030
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	3 cut(s)	58, 415, 1028
CaiI	CAGNNNCTG	1 cut(s)	1043
Cfr13I	GGNCC	3 cut(s)	40, 236, 415
Csp6I	GTAC	1 cut(s)	752
CspCI	CAANNNNNGTGG	2 cut(s)	1093, 1128
CviAII	CATG	2 cut(s)	356, 1010
CviQI	GTAC	1 cut(s)	752
DdeI	CTNAG	2 cut(s)	409, 572
DpnI	GATC	3 cut(s)	311, 425, 866
DpnII	GATC	3 cut(s)	309, 423, 864
EaeI	YGGCCR	2 cut(s)	192, 286
Eam1104I	CTCTTC	2 cut(s)	841, 1084
EarI	CTCTTC	2 cut(s)	841, 1084
Ecl136II	GAGCTC	2 cut(s)	579, 668
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	1070
Eco24I	GRGCYC	2 cut(s)	581, 670
Eco53kI	GAGCTC	2 cut(s)	579, 668
Eco57I	CTGAAG	2 cut(s)	969, 1113
Eco72I	CACGTG	1 cut(s)	421
EcoICRI	GAGCTC	2 cut(s)	579, 668
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	2 cut(s)	581, 670
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	359, 1013
FaiI	YATR	7 cut(s)	216, 357, 389, 761, 970, 1011, 1074
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	2 cut(s)	355, 1009
FauI	CCCGC	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	3 cut(s)	6, 748, 771
FokI	GGATG	6 cut(s)	130, 142, 407, 736, 821, 1017
FriOI	GRGCYC	2 cut(s)	581, 670
Fsp4HI	GCNGC	3 cut(s)	6, 748, 771
FspBI	CTAG	4 cut(s)	336, 488, 915, 1138
GluI	GCNGC	3 cut(s)	6, 748, 771
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	6 cut(s)	41, 194, 238, 288, 417, 1070
HapII	CCGG	2 cut(s)	24, 766
Hin1II	CATG	2 cut(s)	359, 1013
HincII	GTYRAC	3 cut(s)	157, 364, 853
HindII	GTYRAC	3 cut(s)	157, 364, 853
HinfI	GANTC	2 cut(s)	903, 911
HpaII	CCGG	2 cut(s)	24, 766
HphI	GGTGA	2 cut(s)	730, 767
Hpy166II	GTNNAC	6 cut(s)	157, 252, 364, 389, 853, 1048
Hpy188I	TCNGA	3 cut(s)	432, 573, 949
Hpy188III	TCNNGA	4 cut(s)	24, 243, 599, 636
Hpy8I	GTNNAC	6 cut(s)	157, 252, 364, 389, 853, 1048
HpyAV	CCTTC	6 cut(s)	76, 240, 249, 287, 312, 944
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	3 cut(s)	420, 464, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 1067
HpyF3I	CTNAG	2 cut(s)	409, 572
HpySE526I	ACGT	3 cut(s)	420, 464, 1050
Hsp92II	CATG	2 cut(s)	359, 1013
Kpn2I	TCCGGA	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	309, 423, 864
LguI	GCTCTTC	1 cut(s)	841
LmnI	GCTCC	4 cut(s)	410, 576, 584, 665
Lsp1109I	GCAGC	2 cut(s)	734, 782
LweI	GCATC	3 cut(s)	816, 947, 1039
MaeI	CTAG	4 cut(s)	336, 488, 915, 1138
MaeII	ACGT	3 cut(s)	420, 464, 1050
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	3 cut(s)	311, 425, 866
MboI	GATC	3 cut(s)	309, 423, 864
MboII	GAAGA	5 cut(s)	12, 25, 828, 1009, 1071
MhlI	GDGCHC	2 cut(s)	581, 670
MlsI	TGGCCA	2 cut(s)	194, 288
MluCI	AATT	7 cut(s)	184, 219, 441, 603, 674, 784, 963
MluNI	TGGCCA	2 cut(s)	194, 288
MmeI	TCCRAC	2 cut(s)	606, 1058
Mox20I	TGGCCA	2 cut(s)	194, 288
MroI	TCCGGA	1 cut(s)	23
MscI	TGGCCA	2 cut(s)	194, 288
MseI	TTAA	2 cut(s)	294, 1086
MslI	CAYNNNNRTG	1 cut(s)	703
Msp20I	TGGCCA	2 cut(s)	194, 288
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	2 cut(s)	24, 766
MspR9I	CCNGG	2 cut(s)	767, 831
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	2 cut(s)	377, 1067
NciI	CCSGG	1 cut(s)	767
NdeII	GATC	3 cut(s)	309, 423, 864
NlaIII	CATG	2 cut(s)	359, 1013
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	507
OliI	CACNNNNGTG	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	1070
PciSI	GCTCTTC	1 cut(s)	841
PfeI	GAWTC	2 cut(s)	903, 911
PkrI	GCNGC	3 cut(s)	7, 749, 772
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	421
Psp124BI	GAGCTC	2 cut(s)	581, 670
Psp1406I	AACGTT	2 cut(s)	464, 1050
Psp6I	CCWGG	1 cut(s)	829
PspCI	CACGTG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	829
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	3 cut(s)	40, 236, 415
PstI	CTGCAG	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	753
RsaNI	GTAC	1 cut(s)	752
RseI	CAYNNNNRTG	1 cut(s)	703
SacI	GAGCTC	2 cut(s)	581, 670
SapI	GCTCTTC	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	294, 1086
SatI	GCNGC	3 cut(s)	6, 748, 771
Sau3AI	GATC	3 cut(s)	309, 423, 864
Sau96I	GGNCC	3 cut(s)	40, 236, 415
ScrFI	CCNGG	2 cut(s)	767, 831
SduI	GDGCHC	2 cut(s)	581, 670
SfaNI	GCATC	3 cut(s)	816, 947, 1039
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	7 cut(s)	184, 219, 441, 603, 674, 784, 963
SseBI	AGGCCT	1 cut(s)	1070
SsiI	CCGC	1 cut(s)	413
SspI	AATATT	1 cut(s)	1111
SspMI	CTAG	4 cut(s)	336, 488, 915, 1138
SstI	GAGCTC	2 cut(s)	581, 670
StuI	AGGCCT	1 cut(s)	1070
StyD4I	CCNGG	2 cut(s)	765, 829
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	3 cut(s)	423, 467, 1053
TaqI	TCGA	2 cut(s)	670, 1020
TasI	AATT	7 cut(s)	184, 219, 441, 603, 674, 784, 963
TfiI	GAWTC	2 cut(s)	903, 911
Tru1I	TTAA	2 cut(s)	294, 1086
Tru9I	TTAA	2 cut(s)	294, 1086
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	3 cut(s)	5, 747, 770
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	4 cut(s)	137, 344, 740, 776
TspRI	CASTG	1 cut(s)	720
Vha464I	CTTAAG	1 cut(s)	293
XapI	RAATTY	4 cut(s)	184, 603, 674, 963
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	4 cut(s)	336, 488, 915, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.