Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014655

Physical Location & Seq

Genomic Coordinates Forward (+)

5613459 .. 5617497

Gene Structure 4039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G051400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTGCAACCTCATCTTCCAGACTTTTCTTCTTAGCCCTCTCCCTCCTTGCTTGTTTTCCCTTCTGCAGTTGCCATTGCAGTGTAAGTAATAAAAATGCAGAGGGTGGGATGATGAAAGGGATGTTTGTGTTTGGAAGTTCCTTGGTTGACAATGGCAACAATAACTTCTTGCCAAACTCTCTGGCCAGAGCTGATTACTTTCCCTATGGAATTGATTTTCCTCTTGGGCCTTCTGGAAGGTTCACAAATGGCAGAAATGTTATTGACCTTCTTGGTGGCCATCTTAAGCTACCTTCCTTGATCCCAGCTTTTGCTGACCCCAAAACTAGAGGAAGCAAGATTGTTCATGGTGTCAACTTCGCTTCTGGTGCTTCTGGTATACTGGATGATACTGGCTCCTTGGCGGGCCATGTGATCAATATGAACCAGCAAATTAGAAACTTTGAGGAGATAACGTTGCCAGAGTTAGAAACCCAACTGGGGTGCAGAAGCCCTCAGTCACTTCCCAACTACTTGTTTGTGGTGGGAACTGGTGGAAACGATTACTCATTCAACTACTTTCTGAGGAGCTCCAACCAAAATGTCAGTCTGGAAGTGTTTACTGCCAATCTAACTGCCTCTTTGTCCAGACAACTAAAGATTAGAAGACTCAAGTTCGAATCTCCGTGGCATCATATTAGTGCGTGTAAGTTGCACAGTTTGGGAGCTCGAAAATTTGTTGTGATGTCAGTAAATCCACTTGGGTGCAGTCCAGTGGTGAGGATGAACAGACCAACACACAATGGCTGTGTACAAAATATGAACTGGGCAGCTCACCTTTTCAATTCTCACTTGAAGTCTTTGGTGGATGTGATTAGGGCAGAGATGCCTGGCTCTGCTCTTGTATTTGTCAACTCCTACAAGATCATCAGGGACATTATAAAAAACCCTATCTCCAAAGGATTCAATGATTCTAGCACTACCTGTTGTGAAGTGGCATCAATATCTGAAGGTGGAAATGGAATTTTATGCAAGAGGGGAGGTGAAGTGTGTGCAAACAGAAGCAGTCATGTGTACTTCGATGGCTTGCATCCAACGGAAGCTGTAAACGTTCAAATAGCAACAAAGGCCTATGTCTCTTCTCTTAAAACCGAAGTTTATCCCACTAATATTGCACGAATGACCAAATCCAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

394

Amino Acids

42.77

Weight (kDa)

9.2

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12420
malus_domestica	MD10G1044500.v1.1
prunus_persica	Prupe.7G048300_v2.0.a1 Prupe.8G051400_v2.0.a1 Prupe.8G051400_v2.0.a1
pyrus_communis	pycom10g03120
rosa_chinensis	RchiOBHm_Chr6g0272561
rosa_laevigata	RLG00000013666
rosa_multiflora	Rmu_co8481641.1_g000001 Rmu_sc0003080.1_g000014
rosa_roxburghii	Rroxscaffold_7G00196120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh6AG186400 Rh6BG189500 Rh6CG187300 Rh6DG179000
rosa_wichuraiana	Rw6G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
AccI	GTMKAC	1 cut(s)	382
AciI	CCGC	1 cut(s)	407
AclI	AACGTT	2 cut(s)	458, 1092
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	2 cut(s)	186, 280
AcsI	RAATTY	2 cut(s)	716, 1005
AcuI	CTGAAG	1 cut(s)	1011
AfaI	GTAC	2 cut(s)	795, 1058
AfiI	CCNNNNNNNGG	1 cut(s)	483
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	556, 826, 838, 949, 1097
AjnI	CCWGG	1 cut(s)	871
AleI	CACNNNNGTG	1 cut(s)	745
AluBI	AGCT	7 cut(s)	194, 292, 311, 573, 710, 815, 1085
AluI	AGCT	7 cut(s)	194, 292, 311, 573, 710, 815, 1085
Alw21I	GWGCWC	2 cut(s)	575, 712
Alw26I	GTCTC	1 cut(s)	1123
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	5 cut(s)	186, 230, 280, 409, 1110
ApeKI	GCWGC	2 cut(s)	5, 812
ApoI	RAATTY	2 cut(s)	716, 1005
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
AspS9I	GGNCC	2 cut(s)	230, 409
AsuHPI	GGTGA	3 cut(s)	772, 809, 1037
AsuII	TTCGAA	1 cut(s)	660
BalI	TGGCCA	2 cut(s)	188, 282
BanII	GRGCYC	2 cut(s)	575, 712
BbsI	GAAGAC	1 cut(s)	655
Bbv12I	GWGCWC	2 cut(s)	575, 712
BbvI	GCAGC	1 cut(s)	824
BccI	CCATC	2 cut(s)	291, 1058
BciT130I	CCWGG	1 cut(s)	873
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	1123
BfaI	CTAG	3 cut(s)	330, 957, 1180
BfmI	CTRYAG	1 cut(s)	67
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	2 cut(s)	6, 813
BlsI	GCNGC	2 cut(s)	7, 814
Bme1390I	CCNGG	1 cut(s)	873
BmgT120I	GGNCC	2 cut(s)	230, 409
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	873
BmrI	ACTGGG	2 cut(s)	491, 817
BmsI	GCATC	4 cut(s)	682, 858, 989, 1081
BmuI	ACTGGG	2 cut(s)	491, 817
BpiI	GAAGAC	1 cut(s)	655
Bpu14I	TTCGAA	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	638
BsaJI	CCNNGG	3 cut(s)	144, 402, 668
BsaXI	ACNNNNNCTCC	6 cut(s)	443, 473, 920, 950, 1014, 1044
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse1I	ACTGG	6 cut(s)	390, 400, 486, 538, 755, 812
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	873
BseDI	CCNNGG	3 cut(s)	144, 402, 668
BseGI	GGATG	6 cut(s)	117, 129, 394, 771, 856, 1072
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	512, 557
BseNI	ACTGG	6 cut(s)	390, 400, 486, 538, 755, 812
BseRI	GAGGAG	2 cut(s)	464, 583
BseXI	GCAGC	1 cut(s)	824
BseYI	CCCAGC	1 cut(s)	307
BsgI	GTGCAG	2 cut(s)	508, 769
BshFI	GGCC	5 cut(s)	188, 232, 282, 411, 1112
BsiHKAI	GWGCWC	2 cut(s)	575, 712
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	1123
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	5 cut(s)	188, 232, 282, 411, 1112
Bsp119I	TTCGAA	1 cut(s)	660
Bsp1286I	GDGCHC	2 cut(s)	575, 712
Bsp1407I	TGTACA	1 cut(s)	793
Bsp143I	GATC	3 cut(s)	303, 417, 906
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	5 cut(s)	188, 232, 282, 411, 1112
BspCNI	CTCAG	2 cut(s)	511, 558
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	71
BspPI	GGATC	1 cut(s)	298
BspT104I	TTCGAA	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	793
BsrI	ACTGG	6 cut(s)	390, 400, 486, 538, 755, 812
BssECI	CCNNGG	3 cut(s)	144, 402, 668
BssMI	GATC	3 cut(s)	303, 417, 906
BssNAI	GTATAC	1 cut(s)	383
BssT1I	CCWWGG	2 cut(s)	144, 402
Bst1107I	GTATAC	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	1126
BstAFI	CTTAAG	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	793
BstBI	TTCGAA	1 cut(s)	660
BstC8I	GCNNGC	2 cut(s)	409, 1070
BstDEI	CTNAG	3 cut(s)	34, 498, 566
BstDSI	CCRYGG	1 cut(s)	668
BstF5I	GGATG	6 cut(s)	117, 129, 394, 771, 856, 1072
BstKTI	GATC	3 cut(s)	306, 420, 909
BstMAI	GTCTC	1 cut(s)	1123
BstMBI	GATC	3 cut(s)	303, 417, 906
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 1109
BstNI	CCWGG	1 cut(s)	873
BstSCI	CCNGG	1 cut(s)	871
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	824
BstV2I	GAAGAC	1 cut(s)	655
BstZ17I	GTATAC	1 cut(s)	383
BsuRI	GGCC	5 cut(s)	188, 232, 282, 411, 1112
BtgI	CCRYGG	1 cut(s)	668
BtsCI	GGATG	6 cut(s)	117, 129, 394, 771, 856, 1072
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	88, 762
Cac8I	GCNNGC	2 cut(s)	409, 1070
Cfr13I	GGNCC	2 cut(s)	230, 409
Csp6I	GTAC	2 cut(s)	794, 1057
CspCI	CAANNNNNGTGG	2 cut(s)	1135, 1170
CviAII	CATG	3 cut(s)	350, 413, 1052
CviQI	GTAC	2 cut(s)	794, 1057
DdeI	CTNAG	3 cut(s)	34, 498, 566
DpnI	GATC	3 cut(s)	305, 419, 908
DpnII	GATC	3 cut(s)	303, 417, 906
EaeI	YGGCCR	2 cut(s)	186, 280
Eam1104I	CTCTTC	1 cut(s)	1126
EarI	CTCTTC	1 cut(s)	1126
Ecl136II	GAGCTC	2 cut(s)	573, 710
Eco130I	CCWWGG	2 cut(s)	144, 402
Eco147I	AGGCCT	1 cut(s)	1112
Eco24I	GRGCYC	2 cut(s)	575, 712
Eco53kI	GAGCTC	2 cut(s)	573, 710
Eco57I	CTGAAG	1 cut(s)	1011
EcoICRI	GAGCTC	2 cut(s)	573, 710
EcoRII	CCWGG	1 cut(s)	871
EcoT14I	CCWWGG	2 cut(s)	144, 402
EcoT38I	GRGCYC	2 cut(s)	575, 712
ErhI	CCWWGG	2 cut(s)	144, 402
FaeI	CATG	3 cut(s)	353, 416, 1055
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	3 cut(s)	349, 412, 1051
FauI	CCCGC	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	6, 813
FokI	GGATG	6 cut(s)	124, 136, 401, 778, 863, 1059
FriOI	GRGCYC	2 cut(s)	575, 712
Fsp4HI	GCNGC	2 cut(s)	6, 813
FspBI	CTAG	3 cut(s)	330, 957, 1180
GluI	GCNGC	2 cut(s)	6, 813
GsaI	CCCAGC	1 cut(s)	311
HaeIII	GGCC	5 cut(s)	188, 232, 282, 411, 1112
Hin1II	CATG	3 cut(s)	353, 416, 1055
HincII	GTYRAC	3 cut(s)	151, 358, 895
HindII	GTYRAC	3 cut(s)	151, 358, 895
HinfI	GANTC	4 cut(s)	651, 662, 945, 953
HphI	GGTGA	3 cut(s)	772, 809, 1037
Hpy166II	GTNNAC	9 cut(s)	151, 246, 358, 383, 603, 794, 895, 1057, 1090
Hpy188I	TCNGA	2 cut(s)	567, 991
Hpy188III	TCNNGA	4 cut(s)	21, 237, 593, 630
Hpy8I	GTNNAC	9 cut(s)	151, 246, 358, 383, 603, 794, 895, 1057, 1090
HpyAV	CCTTC	6 cut(s)	73, 234, 243, 281, 306, 986
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	2 cut(s)	458, 1092
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 1109
HpyF3I	CTNAG	3 cut(s)	34, 498, 566
HpySE526I	ACGT	2 cut(s)	458, 1092
Hsp92II	CATG	3 cut(s)	353, 416, 1055
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	303, 417, 906
LmnI	GCTCC	4 cut(s)	404, 570, 578, 707
Lsp1109I	GCAGC	1 cut(s)	824
LweI	GCATC	4 cut(s)	682, 858, 989, 1081
MaeI	CTAG	3 cut(s)	330, 957, 1180
MaeII	ACGT	2 cut(s)	458, 1092
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	3 cut(s)	305, 419, 908
MboI	GATC	3 cut(s)	303, 417, 906
MboII	GAAGA	4 cut(s)	9, 22, 660, 1113
MhlI	GDGCHC	2 cut(s)	575, 712
MlsI	TGGCCA	2 cut(s)	188, 282
MluCI	AATT	5 cut(s)	213, 435, 716, 826, 1005
MluNI	TGGCCA	2 cut(s)	188, 282
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	2 cut(s)	600, 1100
Mox20I	TGGCCA	2 cut(s)	188, 282
MscI	TGGCCA	2 cut(s)	188, 282
MseI	TTAA	2 cut(s)	288, 1128
MslI	CAYNNNNRTG	3 cut(s)	81, 681, 745
Msp20I	TGGCCA	2 cut(s)	188, 282
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	2 cut(s)	371, 1109
NdeII	GATC	3 cut(s)	303, 417, 906
NlaIII	CATG	3 cut(s)	353, 416, 1055
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	501
NspV	TTCGAA	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	1112
PfeI	GAWTC	3 cut(s)	662, 945, 953
PkrI	GCNGC	2 cut(s)	7, 814
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
PsiI	TTATAA	1 cut(s)	923
Psp124BI	GAGCTC	2 cut(s)	575, 712
Psp1406I	AACGTT	2 cut(s)	458, 1092
Psp6I	CCWGG	1 cut(s)	871
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	871
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	230, 409
PstI	CTGCAG	1 cut(s)	71
RsaI	GTAC	2 cut(s)	795, 1058
RsaNI	GTAC	2 cut(s)	794, 1057
RseI	CAYNNNNRTG	3 cut(s)	81, 681, 745
SacI	GAGCTC	2 cut(s)	575, 712
SaqAI	TTAA	2 cut(s)	288, 1128
SatI	GCNGC	2 cut(s)	6, 813
Sau3AI	GATC	3 cut(s)	303, 417, 906
Sau96I	GGNCC	2 cut(s)	230, 409
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	2 cut(s)	575, 712
SfaNI	GCATC	4 cut(s)	682, 858, 989, 1081
SfcI	CTRYAG	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	660
SmiMI	CAYNNNNRTG	3 cut(s)	81, 681, 745
SmlI	CTYRAG	2 cut(s)	287, 653
SmoI	CTYRAG	2 cut(s)	287, 653
Sse9I	AATT	5 cut(s)	213, 435, 716, 826, 1005
SseBI	AGGCCT	1 cut(s)	1112
SsiI	CCGC	1 cut(s)	407
SspI	AATATT	1 cut(s)	1153
SspMI	CTAG	3 cut(s)	330, 957, 1180
SstI	GAGCTC	2 cut(s)	575, 712
StuI	AGGCCT	1 cut(s)	1112
StyD4I	CCNGG	1 cut(s)	871
StyI	CCWWGG	2 cut(s)	144, 402
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	2 cut(s)	461, 1095
TaqI	TCGA	3 cut(s)	660, 712, 1062
TasI	AATT	5 cut(s)	213, 435, 716, 826, 1005
TatI	WGTACW	2 cut(s)	793, 1056
TfiI	GAWTC	3 cut(s)	662, 945, 953
Tru1I	TTAA	2 cut(s)	288, 1128
Tru9I	TTAA	2 cut(s)	288, 1128
TscAI	CASTG	2 cut(s)	88, 762
TseFI	GTSAC	1 cut(s)	501
TseI	GCWGC	2 cut(s)	5, 812
Tsp45I	GTSAC	1 cut(s)	501
TspDTI	ATGAA	5 cut(s)	131, 338, 440, 782, 818
TspGWI	ACGGA	2 cut(s)	657, 1094
TspRI	CASTG	2 cut(s)	88, 762
Vha464I	CTTAAG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	716, 1005
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	3 cut(s)	330, 957, 1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.