Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014655

Physical Location & Seq

Genomic Coordinates Forward (+)

38795798 .. 38799832

Gene Structure 4035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTGGAGGCTCGTCTCTGAGACTTTTCATCTTAGGTGTCTCCCTCCTCTCTTTCTCGTTCCAATGCTTCTGCCATTGTAATGTGAACAGAAAAGGTGAGACTAGAAGTGTTGGGATCAAAGGGATGTTTGTGTTTGGAAGCTCCCTGGTTGACAATGGGAACAATAACTTCCTACAAAACTCACTGGCCAGAGCTGATTACTTGCCATATGGAGTTGATTTTCCTCTTGGCCCTTCTGGGAGATTCACAAATGGGAAGAACGTTATCGATCTTCTTGGAGAGCAGCTTAAGATACCTTCCTTCATTCCAGTATTCGCTGACCCCCAAACTAAAGGAAGCAAAATTGTTCATGGTGTCAACTTCGCTTCTGGTGCTTCCGGTATACTCGATGATACTGGCTCCTTAGCGGGACGTGTAATGAGTCTAAATGAGCAAATTAGGAACTTCGAGGTGGTAACTTTGCCAGAGTTAAAAACCCAATTAGGGTTGGGGTGCAGTACAAGCTTTGATTCATCGCTTGATAACTACTTGTTTGTGGTGGGAACTGGTGGAAACGATTACTCTTTCAACTACTTCCTGACCAACCCCCATAATGTCAGTCTTCAAGTCTTCACCGCCAATCTCACATCATCTCTCTCCACAAAACTAAAGTCCTATGGCTATGAACATGATGAAGCTGCCAACCGTGACGCGGCTGAAATGCCCGGTTCAGCACTTGTATTCGTCAACTCCTACAAGATTATCAGGGATATTATTAAGAGTCCCATCTCCAAAGGATTCAAAGATTCGAGCGGTACGTGTTGTGAAGTGGCATCAATAAGTGACGGAGGAAATGGAATCTTATGCAAAAGGGGAGGGAAAGTGTGCCTGAACAGAAGCAGTCATGTCTTCTTTGATGGCTTGCATCCAACGGAAGCTGTGAACGTTCAAATAGCAACCAAGGCATTCGTCTCCACTCTCAAAACTGAAGTTTATCCAACTAATATCCAACAAATGACCCAAAGCCAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

338

Amino Acids

36.39

Weight (kDa)

7.57

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	44 - 313	5.4e-13	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12420
malus_domestica	MD10G1044500.v1.1
prunus_persica	Prupe.7G048300_v2.0.a1 Prupe.8G051400_v2.0.a1 Prupe.8G051400_v2.0.a1
pyrus_communis	pycom10g03120
rosa_chinensis	RchiOBHm_Chr6g0272561
rosa_laevigata	RLG00000013666
rosa_multiflora	Rmu_co8481641.1_g000001 Rmu_sc0003080.1_g000014
rosa_roxburghii	Rroxscaffold_7G00196120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh6AG186400 Rh6BG189500 Rh6CG187300 Rh6DG179000
rosa_wichuraiana	Rw6G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	385
AccII	CGCG	1 cut(s)	695
AciI	CCGC	4 cut(s)	410, 618, 695, 795
AclI	AACGTT	2 cut(s)	264, 927
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	2 cut(s)	502, 799
AfiI	CCNNNNNNNGG	2 cut(s)	486, 694
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	415, 800
AgsI	TTSAA	4 cut(s)	571, 608, 784, 932
AjiI	CACGTC	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	144, 197, 289, 507, 680, 920
AluI	AGCT	6 cut(s)	144, 197, 289, 507, 680, 920
Alw26I	GTCTC	5 cut(s)	16, 21, 46, 95, 958
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	189, 232
ApeKI	GCWGC	2 cut(s)	286, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	2 cut(s)	110, 607
BalI	TGGCCA	1 cut(s)	191
BbsI	GAAGAC	3 cut(s)	596, 604, 883
BbvI	GCAGC	2 cut(s)	298, 667
BccI	CCATC	2 cut(s)	776, 893
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	5 cut(s)	16, 21, 46, 95, 958
BfaI	CTAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	3 cut(s)	287, 681, 696
BlsI	GCNGC	3 cut(s)	288, 682, 697
Bme1390I	CCNGG	2 cut(s)	149, 708
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	149, 708
BmsI	GCATC	2 cut(s)	824, 916
BpiI	GAAGAC	3 cut(s)	596, 604, 883
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	801
BsaJI	CCNNGG	2 cut(s)	147, 942
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 694
Bse1I	ACTGG	4 cut(s)	192, 311, 403, 553
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	147, 942
BseGI	GGATG	2 cut(s)	132, 907
BseLI	CCNNNNNNNGG	2 cut(s)	486, 694
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	4 cut(s)	192, 311, 403, 553
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	298, 667
BsgI	GTGCAG	1 cut(s)	517
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	2 cut(s)	191, 234
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	381, 708
BslFI	GGGAC	2 cut(s)	426, 750
BslI	CCNNNNNNNGG	2 cut(s)	486, 694
BsmAI	GTCTC	5 cut(s)	16, 21, 46, 95, 958
BsmBI	CGTCTC	2 cut(s)	21, 958
BsmFI	GGGAC	2 cut(s)	426, 750
BsmI	GAATGC	1 cut(s)	947
BsnI	GGCC	2 cut(s)	191, 234
Bsp143I	GATC	2 cut(s)	117, 271
BspACI	CCGC	4 cut(s)	410, 618, 695, 795
BspANI	GGCC	2 cut(s)	191, 234
BspCNI	CTCAG	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	695
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	795
BsrI	ACTGG	4 cut(s)	192, 311, 403, 553
BssECI	CCNNGG	2 cut(s)	147, 942
BssMI	GATC	2 cut(s)	117, 271
BssNAI	GTATAC	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	942
Bst1107I	GTATAC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	689
BstAFI	CTTAAG	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	801
BstC8I	GCNNGC	1 cut(s)	905
BstDEI	CTNAG	3 cut(s)	20, 34, 406
BstF5I	GGATG	2 cut(s)	132, 907
BstFNI	CGCG	1 cut(s)	695
BstKTI	GATC	2 cut(s)	120, 274
BstMAI	GTCTC	5 cut(s)	16, 21, 46, 95, 958
BstMBI	GATC	2 cut(s)	117, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 504, 944
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	147, 706
BstUI	CGCG	1 cut(s)	695
BstV1I	GCAGC	2 cut(s)	298, 667
BstV2I	GAAGAC	3 cut(s)	596, 604, 883
BstZ17I	GTATAC	1 cut(s)	386
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	191, 234
BsuTUI	ATCGAT	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	132, 907
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	501, 798
CviAII	CATG	3 cut(s)	353, 671, 887
CviQI	GTAC	2 cut(s)	501, 798
DdeI	CTNAG	3 cut(s)	20, 34, 406
DpnI	GATC	2 cut(s)	119, 273
DpnII	GATC	2 cut(s)	117, 271
EaeI	YGGCCR	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	942
Eco57I	CTGAAG	1 cut(s)	990
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	942
ErhI	CCWWGG	1 cut(s)	942
Esp3I	CGTCTC	2 cut(s)	21, 958
FaeI	CATG	3 cut(s)	356, 674, 890
FaqI	GGGAC	2 cut(s)	426, 750
FatI	CATG	3 cut(s)	352, 670, 886
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	287, 681, 696
FokI	GGATG	2 cut(s)	139, 894
Fsp4HI	GCNGC	3 cut(s)	287, 681, 696
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	3 cut(s)	287, 681, 696
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	191, 234
HapII	CCGG	2 cut(s)	381, 708
HgaI	GACGC	1 cut(s)	701
Hin1II	CATG	3 cut(s)	356, 674, 890
HincII	GTYRAC	3 cut(s)	154, 361, 730
HindII	GTYRAC	3 cut(s)	154, 361, 730
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	7 cut(s)	246, 424, 512, 763, 780, 788, 840
HpaII	CCGG	2 cut(s)	381, 708
HphI	GGTGA	2 cut(s)	110, 607
Hpy166II	GTNNAC	6 cut(s)	88, 154, 361, 386, 730, 925
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	580
Hpy8I	GTNNAC	6 cut(s)	88, 154, 361, 386, 730, 925
HpyAV	CCTTC	3 cut(s)	246, 309, 313
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	4 cut(s)	264, 415, 800, 927
HpyCH4V	TGCA	3 cut(s)	498, 849, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 504, 944
HpyF3I	CTNAG	3 cut(s)	20, 34, 406
HpySE526I	ACGT	4 cut(s)	264, 415, 800, 927
Hsp92II	CATG	3 cut(s)	356, 674, 890
Kzo9I	GATC	2 cut(s)	117, 271
LmnI	GCTCC	2 cut(s)	149, 407
Lsp1109I	GCAGC	2 cut(s)	298, 667
LweI	GCATC	2 cut(s)	824, 916
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	4 cut(s)	264, 415, 800, 927
MaeIII	GTNAC	3 cut(s)	457, 689, 824
MalI	GATC	2 cut(s)	119, 273
MbiI	CCGCTC	1 cut(s)	795
MboI	GATC	2 cut(s)	117, 271
MboII	GAAGA	5 cut(s)	266, 271, 596, 604, 883
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	3 cut(s)	345, 438, 482
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	2 cut(s)	433, 772
MmeI	TCCRAC	3 cut(s)	935, 1004, 1015
MnlI	CCTC	6 cut(s)	56, 59, 237, 445, 824, 851
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	3 cut(s)	291, 473, 759
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	381, 708
MspR9I	CCNGG	2 cut(s)	149, 708
Mva1269I	GAATGC	1 cut(s)	947
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	3 cut(s)	374, 504, 944
NciI	CCSGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	117, 271
NlaIII	CATG	3 cut(s)	356, 674, 890
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	689, 824
PcsI	WCGNNNNNNNCGW	1 cut(s)	797
PctI	GAATGC	1 cut(s)	947
PfeI	GAWTC	5 cut(s)	246, 512, 780, 788, 840
PkrI	GCNGC	3 cut(s)	288, 682, 697
PleI	GAGTC	2 cut(s)	432, 771
PpsI	GAGTC	2 cut(s)	432, 771
Ppu21I	YACGTR	1 cut(s)	801
Psp1406I	AACGTT	2 cut(s)	264, 927
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	502, 799
RsaNI	GTAC	2 cut(s)	501, 798
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	291, 473, 759
SatI	GCNGC	3 cut(s)	287, 681, 696
Sau3AI	GATC	2 cut(s)	117, 271
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	433, 772
ScrFI	CCNGG	2 cut(s)	149, 708
SfaNI	GCATC	2 cut(s)	824, 916
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	345, 438, 482
SsiI	CCGC	4 cut(s)	410, 618, 695, 795
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	147, 706
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	4 cut(s)	267, 418, 803, 930
TaqI	TCGA	4 cut(s)	270, 390, 450, 791
TasI	AATT	3 cut(s)	345, 438, 482
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	5 cut(s)	246, 512, 780, 788, 840
Tru1I	TTAA	3 cut(s)	291, 473, 759
Tru9I	TTAA	3 cut(s)	291, 473, 759
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	2 cut(s)	689, 824
TseI	GCWGC	2 cut(s)	286, 680
Tsp45I	GTSAC	2 cut(s)	689, 824
TspDTI	ATGAA	6 cut(s)	19, 295, 341, 504, 681, 690
TspGWI	ACGGA	2 cut(s)	843, 929
TspRI	CASTG	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	385
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.