Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003080.1

Orthogroup ID

OG0014655

Physical Location & Seq

Genomic Coordinates Forward (+)

72945 .. 77741

Gene Structure 4797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003080.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggctggaggctcatctctgagacttttcatcttaggtgtctccttcctctctttctcgttccaatgcttctgccattgtaatgtgaacagaaaaggtgggactagaagtgttgggatcaaggggatgtttgtgtttggaagctccctggttgacaatgggaacaataacttcctacaaaactcactggccagagctgattacttgccatatggagttgattttcctcttggcccttctgggagattcacaaatgggaagaacgttatcgatcttcttggagagcagcttaagataccttccttcattccagtattcgctgacccccaaactaaaggaagcaaaattgttcatggtatcaacttcgcttctggtgcttctggtatactcgatgatactggctccttagcgaagttgcacagtttgggagcaagaaaatttgtggtgatgtcaataaacccacttgggtgcagtcctatggctatgaacatgatgaagctgccaaccgtgacgcgtaatcgttgcgtacagggtatgaaccgtgcagttcaccttttcaattctcggttcaagtccatggttgatgccataacggctgaaatgcccggttcagcacttgtattcgtcaactcctacaagattatcagggatattatcaatagtcccatctccaaaggtaaaatacatccatctcttcttccttctccatgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

238

Amino Acids

25.68

Weight (kDa)

9.94

Isoelectric Point (pI)

21.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12420
malus_domestica	MD10G1044500.v1.1
prunus_persica	Prupe.7G048300_v2.0.a1 Prupe.8G051400_v2.0.a1 Prupe.8G051400_v2.0.a1
pyrus_communis	pycom10g03120
rosa_chinensis	RchiOBHm_Chr6g0272561
rosa_laevigata	RLG00000013666
rosa_multiflora	Rmu_co8481641.1_g000001 Rmu_sc0003080.1_g000014
rosa_roxburghii	Rroxscaffold_7G00196120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh6AG186400 Rh6BG189500 Rh6CG187300 Rh6DG179000
rosa_wichuraiana	Rw6G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	385
AccII	CGCG	1 cut(s)	514
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	1 cut(s)	528
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	2 cut(s)	559, 571
AjnI	CCWGG	1 cut(s)	147
AleI	CACNNNNGTG	1 cut(s)	466
AluBI	AGCT	4 cut(s)	144, 197, 289, 499
AluI	AGCT	4 cut(s)	144, 197, 289, 499
Alw26I	GTCTC	2 cut(s)	16, 46
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	189, 232
ApeKI	GCWGC	2 cut(s)	286, 499
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	457, 542
BalI	TGGCCA	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	298, 486
BccI	CCATC	2 cut(s)	674, 697
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	16, 46
BfaI	CTAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	290
BglI	GCCNNNNNGGC	1 cut(s)	593
BisI	GCNGC	2 cut(s)	287, 500
BlsI	GCNGC	2 cut(s)	288, 501
Bme1390I	CCNGG	2 cut(s)	149, 606
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	149, 606
BmsI	GCATC	1 cut(s)	574
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	147, 576, 707
Bse1I	ACTGG	3 cut(s)	192, 311, 403
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	147, 576, 707
BseGI	GGATG	2 cut(s)	132, 685
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	3 cut(s)	192, 311, 403
BseXI	GCAGC	2 cut(s)	298, 486
BsgI	GTGCAG	2 cut(s)	490, 564
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	2 cut(s)	191, 234
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	2 cut(s)	115, 648
BsmAI	GTCTC	2 cut(s)	16, 46
BsmFI	GGGAC	2 cut(s)	115, 648
BsnI	GGCC	2 cut(s)	191, 234
Bsp143I	GATC	2 cut(s)	117, 271
Bsp19I	CCATGG	2 cut(s)	576, 707
BspANI	GGCC	2 cut(s)	191, 234
BspCNI	CTCAG	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	192, 311, 403
BssECI	CCNNGG	3 cut(s)	147, 576, 707
BssMI	GATC	2 cut(s)	117, 271
BssNAI	GTATAC	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	576, 707
Bst1107I	GTATAC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	422, 508, 542
Bst6I	CTCTTC	1 cut(s)	699
BstAFI	CTTAAG	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	20, 34, 406
BstDSI	CCRYGG	2 cut(s)	576, 707
BstF5I	GGATG	2 cut(s)	132, 685
BstFNI	CGCG	1 cut(s)	514
BstKTI	GATC	2 cut(s)	120, 274
BstMAI	GTCTC	2 cut(s)	16, 46
BstMBI	GATC	2 cut(s)	117, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 593
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	147, 604
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	298, 486
BstZ17I	GTATAC	1 cut(s)	386
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	191, 234
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	2 cut(s)	576, 707
BtsCI	GGATG	2 cut(s)	132, 685
BtsIMutI	CAGTG	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	4 cut(s)	353, 490, 577, 708
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	3 cut(s)	20, 34, 406
DpnI	GATC	2 cut(s)	119, 273
DpnII	GATC	2 cut(s)	117, 271
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Eco130I	CCWWGG	2 cut(s)	576, 707
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	576, 707
ErhI	CCWWGG	2 cut(s)	576, 707
FaeI	CATG	4 cut(s)	356, 493, 580, 711
FaqI	GGGAC	2 cut(s)	115, 648
FatI	CATG	4 cut(s)	352, 489, 576, 707
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	287, 500
FokI	GGATG	2 cut(s)	139, 672
Fsp4HI	GCNGC	2 cut(s)	287, 500
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	287, 500
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	191, 234
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	520
Hin1II	CATG	4 cut(s)	356, 493, 580, 711
HincII	GTYRAC	2 cut(s)	154, 628
HindII	GTYRAC	2 cut(s)	154, 628
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	457, 542
Hpy166II	GTNNAC	5 cut(s)	88, 154, 386, 550, 628
Hpy188I	TCNGA	1 cut(s)	21
Hpy8I	GTNNAC	5 cut(s)	88, 154, 386, 550, 628
HpyAV	CCTTC	5 cut(s)	55, 246, 309, 313, 711
HpyCH4III	ACNGT	3 cut(s)	422, 508, 542
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	418, 471, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 593
HpyF3I	CTNAG	3 cut(s)	20, 34, 406
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	356, 493, 580, 711
Kzo9I	GATC	2 cut(s)	117, 271
LmnI	GCTCC	3 cut(s)	149, 407, 428
Lsp1109I	GCAGC	2 cut(s)	298, 486
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	2 cut(s)	119, 273
MboI	GATC	2 cut(s)	117, 271
MboII	GAAGA	4 cut(s)	266, 271, 686, 689
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	3 cut(s)	345, 437, 559
MluI	ACGCGT	1 cut(s)	512
MluNI	TGGCCA	1 cut(s)	191
MnlI	CCTC	2 cut(s)	59, 237
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	81, 466
Msp20I	TGGCCA	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	149, 606
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	374, 593
NciI	CCSGG	1 cut(s)	606
NcoI	CCATGG	2 cut(s)	576, 707
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	117, 271
NlaIII	CATG	4 cut(s)	356, 493, 580, 711
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	508
OliI	CACNNNNGTG	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	288, 501
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	81, 466
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	287, 500
Sau3AI	GATC	2 cut(s)	117, 271
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	149, 606
SfaNI	GCATC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	81, 466
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	345, 437, 559
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	147, 604
StyI	CCWWGG	2 cut(s)	576, 707
TaaI	ACNGT	3 cut(s)	422, 508, 542
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	270, 390
TasI	AATT	3 cut(s)	345, 437, 559
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	286, 499
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	6 cut(s)	19, 295, 341, 500, 509, 551
TspRI	CASTG	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	385
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.