Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8481641.1

Orthogroup ID

OG0014655

Physical Location & Seq

Genomic Coordinates Reverse (-)

1248 .. 1517

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8481641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgtcaataaacccacttgggtgcagtcctatggctatgaacatgatgaagctgccaaccgtgacgcgtaatcgttgcgtacagggtatgaaccgtgcagttcaccttttcaattctcggttcaagtccatggttgatgccataacggctgaaatgcccggttcagcacttgtattcgtcaactcctacaagattatcagggatattatcaatagtcccatctccaaaggtaaaatacatccatctcttcttccttctccatgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

89

Amino Acids

9.86

Weight (kDa)

10.3

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12420
malus_domestica	MD10G1044500.v1.1
prunus_persica	Prupe.7G048300_v2.0.a1 Prupe.8G051400_v2.0.a1 Prupe.8G051400_v2.0.a1
pyrus_communis	pycom10g03120
rosa_chinensis	RchiOBHm_Chr6g0272561
rosa_laevigata	RLG00000013666
rosa_multiflora	Rmu_co8481641.1_g000001 Rmu_sc0003080.1_g000014
rosa_roxburghii	Rroxscaffold_7G00196120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh6AG186400 Rh6BG189500 Rh6CG187300 Rh6DG179000
rosa_wichuraiana	Rw6G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	67
AfaI	GTAC	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	112, 124
AleI	CACNNNNGTG	1 cut(s)	19
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	227, 250
BceAI	ACGGC	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	129, 260
BseDI	CCNNGG	2 cut(s)	129, 260
BseGI	GGATG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	39
BsgI	GTGCAG	2 cut(s)	43, 117
Bsh1236I	CGCG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	201
Bsp19I	CCATGG	2 cut(s)	129, 260
BspFNI	CGCG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	129, 260
BssT1I	CCWWGG	2 cut(s)	129, 260
Bst4CI	ACNGT	2 cut(s)	61, 95
Bst6I	CTCTTC	1 cut(s)	252
BstDSI	CCRYGG	2 cut(s)	129, 260
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	39
BtgI	CCRYGG	2 cut(s)	129, 260
BtsCI	GGATG	1 cut(s)	238
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	3 cut(s)	43, 130, 261
CviJI	RGCY	3 cut(s)	35, 52, 149
CviKI_1	RGCY	3 cut(s)	35, 52, 149
CviQI	GTAC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	129, 260
EcoT14I	CCWWGG	2 cut(s)	129, 260
ErhI	CCWWGG	2 cut(s)	129, 260
FaeI	CATG	3 cut(s)	46, 133, 264
FaiI	YATR	7 cut(s)	32, 38, 44, 89, 131, 143, 262
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	3 cut(s)	42, 129, 260
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	46, 133, 264
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	103, 181
Hpy8I	GTNNAC	2 cut(s)	103, 181
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	61, 95
HpyCH4V	TGCA	2 cut(s)	24, 98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	46, 133, 264
LpnPI	CCDG	3 cut(s)	68, 172, 184
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	239, 242
MluCI	AATT	1 cut(s)	112
MluI	ACGCGT	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	19
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	2 cut(s)	129, 260
NlaIII	CATG	3 cut(s)	46, 133, 264
NmuCI	GTSAC	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	19
SatI	GCNGC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	3 cut(s)	54, 108, 232
SfaNI	GCATC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	129, 260
TaaI	ACNGT	2 cut(s)	61, 95
TasI	AATT	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	53, 62, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.