Prupe.7G100100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011439
Physical Location & Seq
Forward (+)
13062247 .. 13062435
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G100100.1

Sequence Viewer

Length: 189 bp
ATGGCGGTGTGGTCGTATCCACCGACGCCCAAGCAGCTGGCGGTGATGGCGTGCTGTTTCGTGACGGGGGTGGCGCTGTTCGCAGTCGGAGCTCATCTTTCACTGGCCAACGTGGGCACACAACAGAACCGGGTCAAGGCTCGCAGGAATTTCGTCAAAGACCGACTAAGAAAGCTCCTAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.87

Weight (kDa)

10.19

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 41
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 148
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 37, 92, 175
AluI AGCT 3 cut(s) 37, 92, 175
Alw21I GWGCWC 1 cut(s) 94
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 119
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciVI GTATCC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 77
BfuI GTATCC 1 cut(s) 27
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 136
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 94, 119
BspACI CCGC 2 cut(s) 5, 41
BspANI GGCC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 39, 52, 142
BstDEI CTNAG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 34, 47, 80, 89
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 3 cut(s) 39, 52, 142
CfoI GCGC 1 cut(s) 76
CseI GACGC 1 cut(s) 34
CviJI RGCY 5 cut(s) 37, 92, 107, 140, 175
CviKI_1 RGCY 5 cut(s) 37, 92, 107, 140, 175
DdeI CTNAG 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 130
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 47, 80, 89
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 1 cut(s) 74
LmnI GCTCC 2 cut(s) 89, 180
LpnPI CCDG 4 cut(s) 23, 89, 130, 143
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 61
MhlI GDGCHC 2 cut(s) 94, 119
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 34, 47, 80, 89
NciI CCSGG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PkrI GCNGC 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 37
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 187
SatI GCNGC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 94, 119
SetI ASST 4 cut(s) 39, 94, 114, 177
Sse9I AATT 1 cut(s) 148
SsiI CCGC 2 cut(s) 5, 41
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 129
TaiI ACGT 1 cut(s) 114
TaqII GACCGA 1 cut(s) 177
TasI AATT 1 cut(s) 148
Tru1I TTAA 1 cut(s) 187
Tru9I TTAA 1 cut(s) 187
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 61
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 148
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.