Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001332

Physical Location & Seq

Genomic Coordinates Reverse (-)

11944354 .. 11947963

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTCCACCCATTGAGGCTACTCAAACAGTTACTGAGATTCCCCAAAAAGTTACTGAAATTCCTAAGAAAGTTGCTGAAGTTCCTAAGAAAGTTACCGAGACTCCCCACAAGGGTAGCAACCATTATTCCTCACATCCACCTCTTAATGAGAGGATACTTTCTTCCATGACCAGGAGGTCTATAGCTGCACACCCTTGGCATGATCTTGAAATAGGACCTGATACTCCAAAGATCTTTAACTGTGTGGTAGAAATCGGAAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAAAACTGGACTTATCAAGGTTGACCGTATACTGTACTCATCTGTTGTCTACCCTCACAACTATGGCTTCATCCCCCGTACGCTTTGTGAGGACAATGACCCCTTGGATGTCTTGATTATTATGCAGGAGCCAGTTCTTCCTGGATGCTTTCTTCGGGCTAAAGCTATTGGCCTGATGCCCATGATTGATCAGGGTGAGAAAGATGACAAGATCATTGCTGTCTGTGCTGATGATCCTGAATACCGTCACTACAATGACATCAAGGAGCTGCCACCACATCGTTTGGCTGAGATCCGTCGCTTCTTTGAGGACTACAAGAAAAATGAGAACAAGGAGGTTTTAGTTGACGACTTTCTCCCTGCATCTGCTGCCTTTGAAAGTATCCAGCAGTCCATGGATCTTTATGCGGACTACATTGTGGAGAGCCTCAGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

243

Amino Acids

27.73

Weight (kDa)

5.79

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	82 - 233	4.1e-58	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02875 AT3G02875 AT3G02875
fragaria_vesca	FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19690 FvH4_6g19700 FvH4_6g19700
malus_domestica	MD14G1032600.v1.1 MD14G1032900.v1.1 MD14G1033000.v1.1 MD14G1033100.v1.1
prunus_persica	Prupe.7G099900_v2.0.a1 Prupe.7G100000_v2.0.a1 Prupe.7G100000_v2.0.a1
pyrus_communis	pycom14g02930 pycom14g02940
rosa_chinensis	RchiOBHm_Chr3g0475011 RchiOBHm_Chr3g0475021 RchiOBHm_Chr3g0475031
rosa_laevigata	RLG00000023869 RLG00000023870 RLG00000023871
rosa_multiflora	Rmu_sc0003093.1_g000010 Rmu_sc0003093.1_g000011 Rmu_sc0003093.1_g000012 Rmu_sc0003093.1_g000017
rosa_roxburghii	Rroxscaffold_6G00406610 Rroxscaffold_6G00406620 Rroxscaffold_6G00406630
rosa_rugosa	Rorug03G0146000 Rorug03G0146100 Rorug03G0146200 Rorug03G0146300 Rorug03G0146300 Rorug03G0146300
rosa_samantha	Rh3AG195700 Rh3AG195900 Rh3AG196000 Rh3BG225900 Rh3BG226100 Rh3BG226200 Rh3CG220700 Rh3CG221000 Rh3CG221200 Rh3DG221200 Rh3DG221300 Rh3DG221400
rosa_wichuraiana	Rw3G017820 Rw3G017830 Rw3G017840 Rw3G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AccI	GTMKAC	2 cut(s)	322, 342
AciI	CCGC	2 cut(s)	701, 727
AclWI	GGATC	3 cut(s)	521, 580, 699
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	2 cut(s)	329, 373
AfiI	CCNNNNNNNGG	2 cut(s)	113, 174
AgsI	TTSAA	2 cut(s)	212, 671
AjnI	CCWGG	2 cut(s)	173, 433
AluBI	AGCT	3 cut(s)	188, 458, 562
AluI	AGCT	3 cut(s)	188, 458, 562
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	3 cut(s)	521, 580, 699
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	3 cut(s)	188, 562, 662
ApoI	RAATTY	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	286, 500
AvaII	GGWCC	1 cut(s)	218
AxyI	CCTNAGG	1 cut(s)	722
BbvI	GCAGC	3 cut(s)	175, 549, 649
BciT130I	CCWGG	2 cut(s)	175, 435
BciVI	GTATCC	2 cut(s)	150, 686
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	183
BfuI	GTATCC	2 cut(s)	150, 686
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	3 cut(s)	189, 563, 663
BlsI	GCNGC	3 cut(s)	190, 564, 664
Bme1390I	CCNGG	2 cut(s)	175, 435
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	6, 423
BmrFI	CCNGG	2 cut(s)	175, 435
BmsI	GCATC	3 cut(s)	428, 459, 665
BsaJI	CCNNGG	3 cut(s)	197, 396, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 174
Bse1I	ACTGG	2 cut(s)	304, 425
Bse21I	CCTNAGG	1 cut(s)	722
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	175, 435
BseDI	CCNNGG	3 cut(s)	197, 396, 687
BseGI	GGATG	4 cut(s)	136, 363, 406, 443
BseLI	CCNNNNNNNGG	2 cut(s)	113, 174
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	27, 573
BseNI	ACTGG	2 cut(s)	304, 425
BseXI	GCAGC	3 cut(s)	175, 549, 649
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	465
BsiWI	CGTACG	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	113, 174
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	465
Bsp143I	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	2 cut(s)	701, 727
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	2 cut(s)	28, 574
BspLI	GGNNCC	2 cut(s)	6, 423
BspPI	GGATC	3 cut(s)	521, 580, 699
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	304, 425
BssECI	CCNNGG	3 cut(s)	197, 396, 687
BssMI	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
BssNAI	GTATAC	1 cut(s)	323
BssT1I	CCWWGG	3 cut(s)	197, 396, 687
Bst1107I	GTATAC	1 cut(s)	323
Bst2UI	CCWGG	2 cut(s)	175, 435
Bst4CI	ACNGT	5 cut(s)	31, 245, 320, 327, 539
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstDEI	CTNAG	5 cut(s)	36, 66, 87, 582, 722
BstDSI	CCRYGG	1 cut(s)	687
BstF5I	GGATG	4 cut(s)	136, 363, 406, 443
BstKTI	GATC	7 cut(s)	208, 237, 484, 507, 529, 588, 694
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 662
BstNI	CCWGG	2 cut(s)	175, 435
BstSCI	CCNGG	2 cut(s)	173, 433
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	175, 549, 649
BstX2I	RGATCY	3 cut(s)	234, 585, 691
BstYI	RGATCY	3 cut(s)	234, 585, 691
BstZ17I	GTATAC	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	722
BsuI	GTATCC	2 cut(s)	150, 686
BsuRI	GGCC	1 cut(s)	465
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	4 cut(s)	136, 363, 406, 443
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	328, 372
CspCI	CAANNNNNGTGG	2 cut(s)	558, 593
CviAII	CATG	4 cut(s)	169, 203, 475, 688
CviQI	GTAC	2 cut(s)	328, 372
DdeI	CTNAG	5 cut(s)	36, 66, 87, 582, 722
DpnI	GATC	7 cut(s)	207, 236, 483, 506, 528, 587, 693
DpnII	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
Eco130I	CCWWGG	3 cut(s)	197, 396, 687
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	173, 433
EcoT14I	CCWWGG	3 cut(s)	197, 396, 687
ErhI	CCWWGG	3 cut(s)	197, 396, 687
FaeI	CATG	4 cut(s)	172, 206, 478, 691
FatI	CATG	4 cut(s)	168, 202, 474, 687
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	2 cut(s)	322, 342
Fnu4HI	GCNGC	3 cut(s)	189, 563, 663
FokI	GGATG	4 cut(s)	123, 350, 413, 450
Fsp4HI	GCNGC	3 cut(s)	189, 563, 663
GluI	GCNGC	3 cut(s)	189, 563, 663
HaeIII	GGCC	1 cut(s)	465
Hin1II	CATG	4 cut(s)	172, 206, 478, 691
HincII	GTYRAC	2 cut(s)	316, 640
HindII	GTYRAC	2 cut(s)	316, 640
HinfI	GANTC	2 cut(s)	40, 103
HphI	GGTGA	2 cut(s)	286, 500
Hpy166II	GTNNAC	4 cut(s)	316, 323, 343, 640
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	3 cut(s)	209, 406, 530
Hpy8I	GTNNAC	4 cut(s)	316, 323, 343, 640
Hpy99I	CGWCG	1 cut(s)	594
HpyCH4III	ACNGT	5 cut(s)	31, 245, 320, 327, 539
HpyCH4V	TGCA	3 cut(s)	191, 418, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 662
HpyF3I	CTNAG	5 cut(s)	36, 66, 87, 582, 722
Hsp92II	CATG	4 cut(s)	172, 206, 478, 691
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
LmnI	GCTCC	3 cut(s)	10, 421, 559
Lsp1109I	GCAGC	3 cut(s)	175, 549, 649
LweI	GCATC	3 cut(s)	428, 459, 665
MaeIII	GTNAC	4 cut(s)	31, 52, 94, 539
MalI	GATC	7 cut(s)	207, 236, 483, 506, 528, 587, 693
MboI	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
MboII	GAAGA	3 cut(s)	156, 422, 437
MflI	RGATCY	3 cut(s)	234, 585, 691
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	147, 240
MslI	CAYNNNNRTG	2 cut(s)	354, 546
MspR9I	CCNGG	2 cut(s)	175, 435
MvaI	CCWGG	2 cut(s)	175, 435
MwoI	GCNNNNNNNGC	2 cut(s)	518, 662
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
NlaIII	CATG	4 cut(s)	172, 206, 478, 691
NlaIV	GGNNCC	2 cut(s)	6, 423
NmuCI	GTSAC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	40
Pfl23II	CGTACG	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	3 cut(s)	190, 564, 664
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	173, 433
PspGI	CCWGG	2 cut(s)	173, 433
PspLI	CGTACG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	6, 423
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	3 cut(s)	234, 585, 691
RsaI	GTAC	2 cut(s)	329, 373
RsaNI	GTAC	2 cut(s)	328, 372
RseI	CAYNNNNRTG	2 cut(s)	354, 546
SaqAI	TTAA	2 cut(s)	147, 240
SatI	GCNGC	3 cut(s)	189, 563, 663
Sau3AI	GATC	7 cut(s)	205, 234, 481, 504, 526, 585, 691
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	175, 435
SetI	ASST	9 cut(s)	145, 182, 190, 223, 276, 315, 460, 564, 633
SfaNI	GCATC	3 cut(s)	428, 459, 665
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	354, 546
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	701, 727
StyD4I	CCNGG	2 cut(s)	173, 433
StyI	CCWWGG	3 cut(s)	197, 396, 687
TaaI	ACNGT	5 cut(s)	31, 245, 320, 327, 539
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	147, 240
Tru9I	TTAA	2 cut(s)	147, 240
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	3 cut(s)	188, 562, 662
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	297, 352
TspGWI	ACGGA	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	60
XmiI	GTMKAC	2 cut(s)	322, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.