RchiOBHm_Chr3g0475011

Iaa-amino acid hydrolase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
20823398 .. 20826010
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44055

Sequence Viewer

Length: 1359 bp
ATGGTTTCCACTTTCACTTTCAGCTTATTACTAGCTGCAACAGTGTGGTTTTACCAATCTCAGGCTTCAGAGGATGCTGATTGTGGATCAGAGCTCGAGTTCCTGACTTGGGAGTTGAGGAAATCGGCAAGAGAGCCTGAGTTCTTTAAATGGATGATAGGGTTGAGAAGAAGAATCCATCAGTATCCAGAGTTGGGATTTCAAGAGCATAAGACGAGTGAACTCATCAGGTCCGAGCTTGACTCCCTTGGAGTTAAGTACAAGTGGCCGGTGGCCAGGACTGGAGTGGTGGCTTCAATTGGGACAGGGTCTAAACCAGTCTTTGCTCTTAGAGCTGACATGGATGCTCTCCCTCTCCAGGAACTAGTGGAGTGGGAGTACAAGAGCAAGATTGATGGAAAGATGCATGCTTGCGGTCACGATTCACATGTCGCAATGCTACTAGGAGCAGCCAAATTGCTTCAAGAAAAAAGAGATATATTGAAGGGAACCGTGAAGCTAGTTTTCCAGCCTGGAGAAGAGGGTTATGCTGGCGCTTACCATATGTTACAAGATGGTGTTTTAGATGATATTGATGGCATCTTTGCCCTGCATGTTCATCCACATATACCAACAGGTACTATAGCTTCGAGGCCTGGTCAAATAGTTGGTGGTGTAGGGCTCTTCAAAGCTACAATACAAGGAATAGGAGGTCATGGGGCAGCGCCACATAAGACCAGGGACCCGATTGTTGCAGCAGCCTTTGCAACACTTGCTCTGCAACAGATTGTGTCTCGAGAGAAAAATCCTCTTGAACCTGGGGTGGTAACAGTAGGGTACATACAGGGCGGTCAAGCAGATAATGTGATCCCAGAGAGTGTGAAGCTTGGAGGAACCTACAGGAGCTTGACTTCAGAGGGCCTCTACTATATCCAAGAAAGGATCAGAGAGGTCATGGAGCAGCAAGCAGCTGTGCATCGTTGTACTGCTGTGGTCGACTTCCTGGAGGAAATACCCCTGCCTCATCCACCAATGGCTAATGATCAAGCGCTCTACGAACATGTGAAGAATGTTGGTCAGGTCCTTCTTGGGAAACCAAATGTGCGGCTTCTGCCACTGGCCATGGCTGCAGAGGATTTCAGCTACTTTGCTGAGAAGACTGCTGCTGCAATTTTTGTTATTGGTACAGGGAATGAGACTCTGAAATCAGATAAAGGAGCACACTCACCCTACTTTTTCATTGACGAGGAGGCTCTTCCATTGGGAGCAGCACTTCATGCTGCAATTGCAGTCTCATACTTGGATGACCATGACTCAGTAGAGCATGTCTCACTCTTCAATTCTGGAGATAAACAGTGCTTAGCATATGAAGTGGTGTAA

Protein Analysis

452

Amino Acids

49.52

Weight (kDa)

5.57

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 109 - 423 2.4e-42 Peptidase family M20/M25/M40
M20_dimer PF07687 221 - 317 1e-11 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 975
AciI CCGC 3 cut(s) 414, 828, 1084
AclWI GGATC 3 cut(s) 94, 841, 929
AcoI YGGCCR 3 cut(s) 266, 273, 1098
AcuI CTGAAG 2 cut(s) 51, 876
AfaI GTAC 6 cut(s) 260, 380, 619, 818, 964, 1165
AfeI AGCGCT 1 cut(s) 1029
AfiI CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
AflIII ACRYGT 2 cut(s) 427, 1039
AgsI TTSAA 7 cut(s) 203, 297, 464, 484, 667, 794, 1318
AhlI ACTAGT 1 cut(s) 364
AjnI CCWGG 7 cut(s) 275, 357, 511, 634, 716, 796, 981
Alw21I GWGCWC 2 cut(s) 96, 1201
Alw26I GTCTC 4 cut(s) 777, 1169, 1276, 1312
AlwI GGATC 3 cut(s) 94, 841, 929
Ama87I CYCGRG 2 cut(s) 95, 774
Aor51HI AGCGCT 1 cut(s) 1029
AoxI GGCC 5 cut(s) 266, 273, 632, 898, 1098
AspLEI GCGC 3 cut(s) 536, 706, 1030
AspS9I GGNCC 4 cut(s) 231, 721, 898, 1060
AsuHPI GGTGA 1 cut(s) 1197
AvaI CYCGRG 2 cut(s) 95, 774
AvaII GGWCC 3 cut(s) 231, 721, 1060
BalI TGGCCA 2 cut(s) 275, 1100
BanII GRGCYC 2 cut(s) 96, 663
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
BbsI GAAGAC 1 cut(s) 1142
Bbv12I GWGCWC 2 cut(s) 96, 1201
BccI CCATC 4 cut(s) 186, 389, 548, 569
BciT130I CCWGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
BciVI GTATCC 1 cut(s) 195
BclI TGATCA 1 cut(s) 1021
BcoDI GTCTC 4 cut(s) 777, 1169, 1276, 1312
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 4 cut(s) 32, 365, 443, 500
BfmI CTRYAG 3 cut(s) 621, 877, 1107
BfoI RGCGCY 3 cut(s) 537, 707, 1031
BfuI GTATCC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 1339
Bme1390I CCNGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
Bme18I GGWCC 3 cut(s) 231, 721, 1060
BmeT110I CYCGRG 2 cut(s) 95, 774
BmgT120I GGNCC 4 cut(s) 231, 721, 898, 1060
BmiI GGNNCC 4 cut(s) 490, 722, 723, 874
BmrFI CCNGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
BmsI GCATC 5 cut(s) 64, 334, 393, 588, 964
BpiI GAAGAC 1 cut(s) 1142
BplI GAGNNNNNCTC 4 cut(s) 227, 259, 1292, 1324
BpmI CTGGAG 5 cut(s) 303, 341, 534, 1004, 1344
Bpu1102I GCTNAGC 1 cut(s) 1339
BsaJI CCNNGG 4 cut(s) 247, 717, 797, 1101
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 3 cut(s) 286, 317, 1101
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
BseDI CCNNGG 4 cut(s) 247, 717, 797, 1101
BseGI GGATG 6 cut(s) 79, 159, 349, 598, 1003, 1288
BseLI CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 4 cut(s) 74, 129, 1122, 1308
BseNI ACTGG 3 cut(s) 286, 317, 1101
BseRI GAGGAG 1 cut(s) 1241
BshFI GGCC 5 cut(s) 268, 275, 634, 900, 1100
BsiHKAI GWGCWC 2 cut(s) 96, 1201
BsiHKCI CYCGRG 2 cut(s) 95, 774
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 2 cut(s) 316, 734
BslI CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
BsmAI GTCTC 4 cut(s) 777, 1169, 1276, 1312
BsmFI GGGAC 2 cut(s) 316, 734
BsnI GGCC 5 cut(s) 268, 275, 634, 900, 1100
BsoBI CYCGRG 2 cut(s) 95, 774
Bsp1286I GDGCHC 3 cut(s) 96, 663, 1201
Bsp143I GATC 4 cut(s) 86, 846, 921, 1021
Bsp1720I GCTNAGC 1 cut(s) 1339
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 3 cut(s) 414, 828, 1084
BspANI GGCC 5 cut(s) 268, 275, 634, 900, 1100
BspCNI CTCAG 4 cut(s) 73, 130, 1123, 1307
BspLI GGNNCC 4 cut(s) 490, 722, 723, 874
BspMAI CTGCAG 1 cut(s) 1111
BspPI GGATC 3 cut(s) 94, 841, 929
BspQI GCTCTTC 2 cut(s) 668, 1239
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 3 cut(s) 286, 317, 1101
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 4 cut(s) 247, 717, 797, 1101
BssMI GATC 4 cut(s) 86, 846, 921, 1021
BssT1I CCWWGG 2 cut(s) 247, 1101
Bst2UI CCWGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
Bst4CI ACNGT 4 cut(s) 43, 493, 811, 1335
Bst6I CTCTTC 4 cut(s) 513, 668, 1239, 1319
BstAPI GCANNNNNTGC 3 cut(s) 743, 752, 1256
BstC8I GCNNGC 4 cut(s) 408, 412, 532, 945
BstDEI CTNAG 6 cut(s) 60, 138, 329, 1131, 1294, 1339
BstDSI CCRYGG 1 cut(s) 1101
BstF5I GGATG 6 cut(s) 79, 159, 349, 598, 1003, 1288
BstH2I RGCGCY 3 cut(s) 537, 707, 1031
BstHHI GCGC 3 cut(s) 536, 706, 1030
BstKTI GATC 4 cut(s) 89, 849, 924, 1024
BstMAI GTCTC 4 cut(s) 777, 1169, 1276, 1312
BstMBI GATC 4 cut(s) 86, 846, 921, 1021
BstMWI GCNNNNNNNGC 7 cut(s) 332, 743, 752, 1090, 1106, 1256, 1265
BstNI CCWGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
BstNSI RCATGY 5 cut(s) 410, 431, 596, 1043, 1307
BstSCI CCNGG 7 cut(s) 275, 357, 511, 634, 716, 796, 981
BstSFI CTRYAG 3 cut(s) 621, 877, 1107
BstV2I GAAGAC 1 cut(s) 1142
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 5 cut(s) 268, 275, 634, 900, 1100
BtgI CCRYGG 1 cut(s) 1101
BtsCI GGATG 6 cut(s) 79, 159, 349, 598, 1003, 1288
BtsIMutI CAGTG 3 cut(s) 48, 1094, 1340
Cac8I GCNNGC 4 cut(s) 408, 412, 532, 945
CfoI GCGC 3 cut(s) 536, 706, 1030
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 4 cut(s) 231, 721, 898, 1060
Csp6I GTAC 6 cut(s) 259, 379, 618, 817, 963, 1164
CviQI GTAC 6 cut(s) 259, 379, 618, 817, 963, 1164
DdeI CTNAG 6 cut(s) 60, 138, 329, 1131, 1294, 1339
DpnI GATC 4 cut(s) 88, 848, 923, 1023
DpnII GATC 4 cut(s) 86, 846, 921, 1021
DraI TTTAAA 1 cut(s) 148
EaeI YGGCCR 3 cut(s) 266, 273, 1098
Eam1104I CTCTTC 4 cut(s) 513, 668, 1239, 1319
EarI CTCTTC 4 cut(s) 513, 668, 1239, 1319
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 247, 1101
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 2 cut(s) 96, 663
Eco47I GGWCC 3 cut(s) 231, 721, 1060
Eco47III AGCGCT 1 cut(s) 1029
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 51, 876
Eco88I CYCGRG 2 cut(s) 95, 774
EcoICRI GAGCTC 1 cut(s) 94
EcoO109I RGGNCCY 3 cut(s) 721, 898, 1060
EcoRII CCWGG 7 cut(s) 275, 357, 511, 634, 716, 796, 981
EcoT14I CCWWGG 2 cut(s) 247, 1101
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 96, 663
ErhI CCWWGG 2 cut(s) 247, 1101
FaqI GGGAC 2 cut(s) 316, 734
FauNDI CATATG 2 cut(s) 543, 1345
FbaI TGATCA 1 cut(s) 1021
FblI GTMKAC 1 cut(s) 975
FokI GGATG 6 cut(s) 86, 166, 356, 585, 990, 1295
FriOI GRGCYC 2 cut(s) 96, 663
FspBI CTAG 4 cut(s) 32, 365, 443, 500
GlaI GCGC 3 cut(s) 535, 705, 1029
GsuI CTGGAG 5 cut(s) 303, 341, 534, 1004, 1344
HaeII RGCGCY 3 cut(s) 537, 707, 1031
HaeIII GGCC 5 cut(s) 268, 275, 634, 900, 1100
HapII CCGG 1 cut(s) 269
HhaI GCGC 3 cut(s) 536, 706, 1030
Hin6I GCGC 3 cut(s) 534, 704, 1028
HinP1I GCGC 3 cut(s) 534, 704, 1028
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 5 cut(s) 174, 242, 422, 1177, 1292
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 1197
Hpy166II GTNNAC 2 cut(s) 221, 976
Hpy188I TCNGA 7 cut(s) 70, 91, 235, 895, 926, 1182, 1189
Hpy188III TCNNGA 9 cut(s) 103, 188, 203, 419, 464, 774, 776, 791, 1323
Hpy8I GTNNAC 2 cut(s) 221, 976
HpyAV CCTTC 2 cut(s) 478, 1073
HpyCH4III ACNGT 4 cut(s) 43, 493, 811, 1335
HpyF10VI GCNNNNNNNGC 7 cut(s) 332, 743, 752, 1090, 1106, 1256, 1265
HpyF3I CTNAG 6 cut(s) 60, 138, 329, 1131, 1294, 1339
HspAI GCGC 3 cut(s) 534, 704, 1028
KflI GGGWCCC 1 cut(s) 721
Ksp22I TGATCA 1 cut(s) 1021
Kzo9I GATC 4 cut(s) 86, 846, 921, 1021
LguI GCTCTTC 2 cut(s) 668, 1239
LmnI GCTCC 5 cut(s) 446, 882, 937, 1196, 1244
LweI GCATC 5 cut(s) 64, 334, 393, 588, 964
MaeI CTAG 4 cut(s) 32, 365, 443, 500
MaeIII GTNAC 3 cut(s) 416, 546, 805
MalI GATC 4 cut(s) 88, 848, 923, 1023
MboI GATC 4 cut(s) 86, 846, 921, 1021
MboII GAAGA 8 cut(s) 180, 183, 530, 655, 1057, 1147, 1226, 1306
MfeI CAATTG 2 cut(s) 297, 1263
MhlI GDGCHC 3 cut(s) 96, 663, 1201
MlsI TGGCCA 2 cut(s) 275, 1100
MluCI AATT 5 cut(s) 297, 455, 1149, 1263, 1318
MluNI TGGCCA 2 cut(s) 275, 1100
MlyI GAGTC 3 cut(s) 236, 1171, 1286
Mox20I TGGCCA 2 cut(s) 275, 1100
Mph1103I ATGCAT 1 cut(s) 408
MscI TGGCCA 2 cut(s) 275, 1100
MseI TTAA 2 cut(s) 147, 255
Msp20I TGGCCA 2 cut(s) 275, 1100
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
MunI CAATTG 2 cut(s) 297, 1263
MvaI CCWGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
MwoI GCNNNNNNNGC 7 cut(s) 332, 743, 752, 1090, 1106, 1256, 1265
NcoI CCATGG 1 cut(s) 1101
NdeI CATATG 2 cut(s) 543, 1345
NdeII GATC 4 cut(s) 86, 846, 921, 1021
NlaIV GGNNCC 4 cut(s) 490, 722, 723, 874
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 5 cut(s) 410, 431, 596, 1043, 1307
PaeI GCATGC 1 cut(s) 410
PaeR7I CTCGAG 2 cut(s) 95, 774
PceI AGGCCT 1 cut(s) 634
PciI ACATGT 2 cut(s) 427, 1039
PciSI GCTCTTC 2 cut(s) 668, 1239
PfeI GAWTC 2 cut(s) 174, 422
PflFI GACNNNGTC 1 cut(s) 307
PfoI TCCNGGA 2 cut(s) 357, 981
PleI GAGTC 3 cut(s) 236, 1171, 1286
PpsI GAGTC 3 cut(s) 236, 1171, 1286
PpuMI RGGWCCY 2 cut(s) 721, 1060
PscI ACATGT 2 cut(s) 427, 1039
Psp124BI GAGCTC 1 cut(s) 96
Psp5II RGGWCCY 2 cut(s) 721, 1060
Psp6I CCWGG 7 cut(s) 275, 357, 511, 634, 716, 796, 981
PspGI CCWGG 7 cut(s) 275, 357, 511, 634, 716, 796, 981
PspN4I GGNNCC 4 cut(s) 490, 722, 723, 874
PspPI GGNCC 4 cut(s) 231, 721, 898, 1060
PspPPI RGGWCCY 2 cut(s) 721, 1060
PspXI VCTCGAGB 1 cut(s) 95
PstI CTGCAG 1 cut(s) 1111
PsyI GACNNNGTC 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 6 cut(s) 260, 380, 619, 818, 964, 1165
RsaNI GTAC 6 cut(s) 259, 379, 618, 817, 963, 1164
SacI GAGCTC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 974
SapI GCTCTTC 2 cut(s) 668, 1239
SaqAI TTAA 2 cut(s) 147, 255
Sau3AI GATC 4 cut(s) 86, 846, 921, 1021
Sau96I GGNCC 4 cut(s) 231, 721, 898, 1060
SchI GAGTC 3 cut(s) 236, 1171, 1286
ScrFI CCNGG 7 cut(s) 277, 359, 513, 636, 718, 798, 983
SduI GDGCHC 3 cut(s) 96, 663, 1201
SfaNI GCATC 5 cut(s) 64, 334, 393, 588, 964
SfcI CTRYAG 3 cut(s) 621, 877, 1107
Sfr274I CTCGAG 2 cut(s) 95, 774
SinI GGWCC 3 cut(s) 231, 721, 1060
SlaI CTCGAG 2 cut(s) 95, 774
SmlI CTYRAG 2 cut(s) 95, 774
SmoI CTYRAG 2 cut(s) 95, 774
SpeI ACTAGT 1 cut(s) 364
SphI GCATGC 1 cut(s) 410
Sse9I AATT 5 cut(s) 297, 455, 1149, 1263, 1318
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 3 cut(s) 414, 828, 1084
SspMI CTAG 4 cut(s) 32, 365, 443, 500
SstI GAGCTC 1 cut(s) 96
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 7 cut(s) 275, 357, 511, 634, 716, 796, 981
StyI CCWWGG 2 cut(s) 247, 1101
TaaI ACNGT 4 cut(s) 43, 493, 811, 1335
TaqI TCGA 4 cut(s) 96, 629, 775, 975
TasI AATT 5 cut(s) 297, 455, 1149, 1263, 1318
TatI WGTACW 3 cut(s) 258, 378, 962
TauI GCSGC 1 cut(s) 1087
TfiI GAWTC 2 cut(s) 174, 422
Tru1I TTAA 2 cut(s) 147, 255
Tru9I TTAA 2 cut(s) 147, 255
TscAI CASTG 3 cut(s) 48, 1101, 1340
TseFI GTSAC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 3 cut(s) 587, 1207, 1244
TspRI CASTG 3 cut(s) 48, 1101, 1340
Tth111I GACNNNGTC 1 cut(s) 307
VpaK11BI GGWCC 3 cut(s) 231, 721, 1060
XceI RCATGY 5 cut(s) 410, 431, 596, 1043, 1307
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XhoI CTCGAG 2 cut(s) 95, 774
XmiI GTMKAC 1 cut(s) 975
XspI CTAG 4 cut(s) 32, 365, 443, 500
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.