Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001332

Physical Location & Seq

Genomic Coordinates Reverse (-)

19620374 .. 19621963

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGGGCGCTGCGTATCGTGTTTTTATTGCTACCGACACTTTCAGAGCAGAGAGCACTGCCGGTTCGCGACCGGAGCTGAGTCAACTGAGTCGGGAGTTGCTGGACTCGACCAGGGAGCCTGAATTCTTTGATTGGTTGAGAAAAGTCAAGAGGAAAATCCACGAGAACCCTGAGCTCGCCTTTGAGGAGGACGAGACCAGCCGATTCATACGATCGGAGCTCGACTTGCTTGGGATAGAGTACACATGGCCAGTGGCCAAGACGGGGGTGGTGGCTTCTATCGGTTCTGGGTTGCAGCCATGGTTCACTCTCAGGGCAGACATGGATGCTCTCCCAATTGAGGGCACAATTAAGCTTGTTTTTCAACCTGCAGAGAAGGGTCATGCAGGGGCATACCATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

135

Amino Acids

15.26

Weight (kDa)

5.23

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02875 AT3G02875 AT3G02875
fragaria_vesca	FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19690 FvH4_6g19700 FvH4_6g19700
malus_domestica	MD14G1032600.v1.1 MD14G1032900.v1.1 MD14G1033000.v1.1 MD14G1033100.v1.1
prunus_persica	Prupe.7G099900_v2.0.a1 Prupe.7G100000_v2.0.a1 Prupe.7G100000_v2.0.a1
pyrus_communis	pycom14g02930 pycom14g02940
rosa_chinensis	RchiOBHm_Chr3g0475011 RchiOBHm_Chr3g0475021 RchiOBHm_Chr3g0475031
rosa_laevigata	RLG00000023869 RLG00000023870 RLG00000023871
rosa_multiflora	Rmu_sc0003093.1_g000010 Rmu_sc0003093.1_g000011 Rmu_sc0003093.1_g000012 Rmu_sc0003093.1_g000017
rosa_roxburghii	Rroxscaffold_6G00406610 Rroxscaffold_6G00406620 Rroxscaffold_6G00406630
rosa_rugosa	Rorug03G0146000 Rorug03G0146100 Rorug03G0146200 Rorug03G0146300 Rorug03G0146300 Rorug03G0146300
rosa_samantha	Rh3AG195700 Rh3AG195900 Rh3AG196000 Rh3BG225900 Rh3BG226100 Rh3BG226200 Rh3CG220700 Rh3CG221000 Rh3CG221200 Rh3DG221200 Rh3DG221300 Rh3DG221400
rosa_wichuraiana	Rw3G017820 Rw3G017830 Rw3G017840 Rw3G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AccII	CGCG	1 cut(s)	70
AcoI	YGGCCR	2 cut(s)	251, 258
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	267, 343, 344
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	4 cut(s)	79, 178, 223, 358
AluI	AGCT	4 cut(s)	79, 178, 223, 358
Alw21I	GWGCWC	3 cut(s)	59, 180, 225
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	2 cut(s)	251, 258
ApeKI	GCWGC	2 cut(s)	11, 298
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	350
BalI	TGGCCA	2 cut(s)	253, 260
BanII	GRGCYC	2 cut(s)	180, 225
BauI	CACGAG	1 cut(s)	164
Bbv12I	GWGCWC	3 cut(s)	59, 180, 225
BbvI	GCAGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	379
BisI	GCNGC	2 cut(s)	12, 299
BlsI	GCNGC	2 cut(s)	13, 300
Bme1390I	CCNGG	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	114, 302
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 343, 344
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	114, 302
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	267, 343, 344
BseMII	CTCAG	4 cut(s)	71, 80, 165, 328
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	2 cut(s)	74, 218
BshFI	GGCC	2 cut(s)	253, 260
BsiEI	CGRYCG	2 cut(s)	74, 218
BsiHKAI	GWGCWC	3 cut(s)	59, 180, 225
BsiSI	CCGG	2 cut(s)	63, 74
BslI	CCNNNNNNNGG	3 cut(s)	267, 343, 344
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	253, 260
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	4 cut(s)	59, 180, 225, 350
Bsp143I	GATC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	70
BspANI	GGCC	2 cut(s)	253, 260
BspCNI	CTCAG	4 cut(s)	72, 81, 166, 327
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	114, 302
BssMI	GATC	1 cut(s)	215
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	80, 89, 174, 314
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	215
BstMCI	CGRYCG	2 cut(s)	74, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 229
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	350
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	253, 260
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 261
BtuMI	TCGCGA	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	4 cut(s)	249, 303, 325, 386
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	4 cut(s)	80, 89, 174, 314
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	251, 258
Ecl136II	GAGCTC	2 cut(s)	178, 223
Eco130I	CCWWGG	1 cut(s)	302
Eco24I	GRGCYC	2 cut(s)	180, 225
Eco31I	GGTCTC	1 cut(s)	191
Eco53kI	GAGCTC	2 cut(s)	178, 223
EcoICRI	GAGCTC	2 cut(s)	178, 223
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	302
EcoT38I	GRGCYC	2 cut(s)	180, 225
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	4 cut(s)	252, 306, 328, 389
FaiI	YATR	8 cut(s)	212, 250, 304, 326, 387, 397, 402, 404
FatI	CATG	4 cut(s)	248, 302, 324, 385
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	12, 299
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	2 cut(s)	180, 225
Fsp4HI	GCNGC	2 cut(s)	12, 299
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	12, 299
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	253, 260
HapII	CCGG	2 cut(s)	63, 74
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	252, 306, 328, 389
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	4 cut(s)	82, 91, 107, 207
HpaII	CCGG	2 cut(s)	63, 74
Hpy166II	GTNNAC	3 cut(s)	86, 246, 309
Hpy188I	TCNGA	2 cut(s)	47, 220
Hpy188III	TCNNGA	3 cut(s)	69, 95, 151
Hpy8I	GTNNAC	3 cut(s)	86, 246, 309
HpyAV	CCTTC	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	298, 374, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 229
HpyF3I	CTNAG	4 cut(s)	80, 89, 174, 314
Hsp92II	CATG	4 cut(s)	252, 306, 328, 389
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	215
LmnI	GCTCC	3 cut(s)	76, 118, 220
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	319
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	4 cut(s)	59, 180, 225, 350
MlsI	TGGCCA	2 cut(s)	253, 260
MluCI	AATT	3 cut(s)	125, 339, 351
MluNI	TGGCCA	2 cut(s)	253, 260
MlyI	GAGTC	3 cut(s)	91, 100, 101
MnlI	CCTC	4 cut(s)	147, 181, 184, 337
Mox20I	TGGCCA	2 cut(s)	253, 260
MscI	TGGCCA	2 cut(s)	253, 260
MseI	TTAA	1 cut(s)	354
Msp20I	TGGCCA	2 cut(s)	253, 260
MspI	CCGG	2 cut(s)	63, 74
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	76, 229
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	4 cut(s)	252, 306, 328, 389
NlaIV	GGNNCC	1 cut(s)	120
NruI	TCGCGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	13, 300
Ple19I	CGATCG	1 cut(s)	218
PleI	GAGTC	3 cut(s)	90, 99, 101
PpsI	GAGTC	3 cut(s)	90, 99, 101
Psp124BI	GAGCTC	2 cut(s)	180, 225
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	376
PvuI	CGATCG	1 cut(s)	218
RruI	TCGCGA	1 cut(s)	70
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	2 cut(s)	180, 225
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	12, 299
Sau3AI	GATC	1 cut(s)	215
SchI	GAGTC	3 cut(s)	91, 100, 101
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	4 cut(s)	59, 180, 225, 350
SetI	ASST	5 cut(s)	81, 180, 225, 360, 373
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	125, 339, 351
SstI	GAGCTC	2 cut(s)	180, 225
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	302
TaqI	TCGA	2 cut(s)	110, 225
TasI	AATT	3 cut(s)	125, 339, 351
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	64, 261
TseI	GCWGC	2 cut(s)	11, 298
TspDTI	ATGAA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	64, 261
XapI	RAATTY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.