Rroxscaffold_6G00406630

Iaa-amino acid hydrolase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
29146227 .. 29150878
4652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406630.1

Sequence Viewer

Length: 1347 bp
ATGGTTTCCACTTTCACTTTCGGCTTATTACTAGCTGCAACAGTGTGGTTTTACCAATCTCAGGCTTCAGAGGATGCTGATTGTGGATCAGAGCACGAGTTCCTGACTTTGGAGTTGAGGAAATCGGTGAGAGAGCCTGAGTTCTTTAAATGGATGATAGGGTTGAGAAGAAGAATTCATCAGTATCCAGAGTTGGGATTTCAAGAGCATAAGACGAGTGAACTCATCAGGTCCGAGCTTGACTCCCTTGGAGTTAAGTACAAGTGGCCGGTGGCCAAGACTGGAGTGGTGGCTTCAATTGGGAAAGGGTCTAAACCAGTCTTTGCTCTTAGAGCTGACATGGATGCTCTCCCTCTCCAGGAACTAGTGGAGTGGGAGTACAAGAGCAAGATTGATGGAAAGATGCATGCTTGCGGTCACGATTCACATGTCGCAATGCTACTAGGAGCAGCCAAATTGCTTCAAGAAAAAAGAGATATATTGAAGCTAGTTTTCCAGCCTGGAGAAGAGGGTTATGCTGGCGCTTACCATATGTTACAAGATGGTGTTTTAGATGATATTGATGGCATCTTTGCCCTGCATGTTTATCCACATATACCAACAGGTACTATAGCTTCGAGGCCTGGTCAAATAGTTGGTGGTGTAGGGCTCTTCAAAGCTACAATACAAGGAATAGGAGGTCATGGGGCAGCGCCACATAAGACCAGGGACCCTATTGTTGCAGCAGCCTTCGCAACACTTGCTCTGCAACAGATTGTGTCTCGAGAGAAGAATCCTCTTGAACCTGGAGTGGTAACAGTAGGGTACATACAGGGCGGTCAAGCAGATAATGTGATCCCAGAGAGTGTGAAGCTTGGAGGAACCTACAGGAGCTTGACTTCAGAGGGCCTCTACTATATCCAAGAAAGGATCAGAGAGGTCATGGAGCAGCAAGCAGCTGTGCATCGTTGTTCTGCTGTGGTTGACTTCCTGGAGGAAATACCCCTGCCTCATCCACCAATGGCTAATGATCAATCGCTCTATGAACATGTGAAGAATGTTGGTCAGGTCCTTCTTGGGAAACCAAATGTGCGGCTTCTGCCACTGACCATGGTTGCAGAGGATTTCAGCTACTTTGCTGAGAAGACTGCTGCTGCACTTTTTGTTATTGGTACAGGGAATGAGACACTAAAATCAGATAAAACAGCACACTCACCCTACTTTTTCATTGACGAGGAGGCTCTTCCATTGGGAGCAGCACTTCATGCTGCAATTGCAATCTCATACTTGGATGACCATGACTCAGTAGAGCATGTCTCACTCTTCAATTCTGGAGATAAACAGTGCTTAGCATATGAAGTGCTGTAA

Protein Analysis

448

Amino Acids

49.24

Weight (kDa)

5.57

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 109 - 419 2.7e-38 Peptidase family M20/M25/M40
M20_dimer PF07687 217 - 313 1e-11 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 414, 816, 1072
AclWI GGATC 3 cut(s) 94, 829, 917
AcoI YGGCCR 2 cut(s) 266, 273
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 51, 864
AfaI GTAC 5 cut(s) 260, 380, 607, 806, 1153
AfiI CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
AflIII ACRYGT 2 cut(s) 427, 1027
AgsI TTSAA 7 cut(s) 203, 297, 464, 484, 655, 782, 1306
AhlI ACTAGT 1 cut(s) 364
AjnI CCWGG 6 cut(s) 357, 499, 622, 704, 784, 969
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 765, 1157, 1300
AlwI GGATC 3 cut(s) 94, 829, 917
Ama87I CYCGRG 1 cut(s) 762
AoxI GGCC 4 cut(s) 266, 273, 620, 886
ApoI RAATTY 1 cut(s) 174
AspLEI GCGC 2 cut(s) 524, 694
AspS9I GGNCC 4 cut(s) 231, 709, 886, 1048
AsuHPI GGTGA 2 cut(s) 139, 1185
AvaI CYCGRG 1 cut(s) 762
AvaII GGWCC 3 cut(s) 231, 709, 1048
BalI TGGCCA 1 cut(s) 275
BanII GRGCYC 1 cut(s) 651
BarI GAAGNNNNNNTAC 2 cut(s) 598, 630
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 1130
Bbv12I GWGCWC 1 cut(s) 96
BccI CCATC 3 cut(s) 389, 536, 557
BciT130I CCWGG 6 cut(s) 359, 501, 624, 706, 786, 971
BciVI GTATCC 1 cut(s) 195
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 3 cut(s) 765, 1157, 1300
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 4 cut(s) 32, 365, 443, 488
BfmI CTRYAG 2 cut(s) 609, 865
BfoI RGCGCY 2 cut(s) 525, 695
BfuI GTATCC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 1327
Bme1390I CCNGG 6 cut(s) 359, 501, 624, 706, 786, 971
Bme18I GGWCC 3 cut(s) 231, 709, 1048
BmeT110I CYCGRG 1 cut(s) 762
BmgT120I GGNCC 4 cut(s) 231, 709, 886, 1048
BmiI GGNNCC 3 cut(s) 710, 711, 862
BmrFI CCNGG 6 cut(s) 359, 501, 624, 706, 786, 971
BmsI GCATC 5 cut(s) 64, 334, 393, 576, 952
BpiI GAAGAC 1 cut(s) 1130
BplI GAGNNNNNCTC 4 cut(s) 227, 259, 1280, 1312
BpmI CTGGAG 6 cut(s) 303, 341, 522, 807, 992, 1332
Bpu1102I GCTNAGC 1 cut(s) 1327
BsaJI CCNNGG 3 cut(s) 247, 705, 1089
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 286, 317
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 6 cut(s) 359, 501, 624, 706, 786, 971
BseDI CCNNGG 3 cut(s) 247, 705, 1089
BseGI GGATG 5 cut(s) 79, 159, 349, 991, 1276
BseLI CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 4 cut(s) 74, 129, 1110, 1296
BseNI ACTGG 2 cut(s) 286, 317
BseRI GAGGAG 1 cut(s) 1229
BsgI GTGCAG 1 cut(s) 1119
BshFI GGCC 4 cut(s) 268, 275, 622, 888
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 762
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 4 cut(s) 61, 109, 194, 358
BsmAI GTCTC 3 cut(s) 765, 1157, 1300
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 4 cut(s) 268, 275, 622, 888
BsoBI CYCGRG 1 cut(s) 762
Bsp1286I GDGCHC 2 cut(s) 96, 651
Bsp143I GATC 4 cut(s) 86, 834, 909, 1009
Bsp1720I GCTNAGC 1 cut(s) 1327
Bsp19I CCATGG 1 cut(s) 1089
BspACI CCGC 3 cut(s) 414, 816, 1072
BspANI GGCC 4 cut(s) 268, 275, 622, 888
BspCNI CTCAG 4 cut(s) 73, 130, 1111, 1295
BspLI GGNNCC 3 cut(s) 710, 711, 862
BspPI GGATC 3 cut(s) 94, 829, 917
BspQI GCTCTTC 2 cut(s) 656, 1227
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 2 cut(s) 286, 317
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 247, 705, 1089
BssMI GATC 4 cut(s) 86, 834, 909, 1009
BssSI CACGAG 1 cut(s) 95
BssT1I CCWWGG 2 cut(s) 247, 1089
Bst2BI CACGAG 1 cut(s) 95
Bst2UI CCWGG 6 cut(s) 359, 501, 624, 706, 786, 971
Bst4CI ACNGT 3 cut(s) 43, 799, 1323
Bst6I CTCTTC 4 cut(s) 501, 656, 1227, 1307
BstAPI GCANNNNNTGC 2 cut(s) 740, 1244
BstC8I GCNNGC 4 cut(s) 408, 412, 520, 933
BstDEI CTNAG 6 cut(s) 60, 138, 329, 1119, 1282, 1327
BstDSI CCRYGG 1 cut(s) 1089
BstF5I GGATG 5 cut(s) 79, 159, 349, 991, 1276
BstH2I RGCGCY 2 cut(s) 525, 695
BstHHI GCGC 2 cut(s) 524, 694
BstKTI GATC 4 cut(s) 89, 837, 912, 1012
BstMAI GTCTC 3 cut(s) 765, 1157, 1300
BstMBI GATC 4 cut(s) 86, 834, 909, 1009
BstMWI GCNNNNNNNGC 6 cut(s) 332, 731, 740, 1078, 1244, 1253
BstNI CCWGG 6 cut(s) 359, 501, 624, 706, 786, 971
BstNSI RCATGY 5 cut(s) 410, 431, 584, 1031, 1295
BstSCI CCNGG 6 cut(s) 357, 499, 622, 704, 784, 969
BstSFI CTRYAG 2 cut(s) 609, 865
BstV2I GAAGAC 1 cut(s) 1130
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 4 cut(s) 268, 275, 622, 888
BtgI CCRYGG 1 cut(s) 1089
BtsCI GGATG 5 cut(s) 79, 159, 349, 991, 1276
BtsIMutI CAGTG 3 cut(s) 48, 1082, 1328
Cac8I GCNNGC 4 cut(s) 408, 412, 520, 933
CfoI GCGC 2 cut(s) 524, 694
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 4 cut(s) 231, 709, 886, 1048
Csp6I GTAC 5 cut(s) 259, 379, 606, 805, 1152
CviQI GTAC 5 cut(s) 259, 379, 606, 805, 1152
DdeI CTNAG 6 cut(s) 60, 138, 329, 1119, 1282, 1327
DpnI GATC 4 cut(s) 88, 836, 911, 1011
DpnII GATC 4 cut(s) 86, 834, 909, 1009
DraI TTTAAA 1 cut(s) 148
EaeI YGGCCR 2 cut(s) 266, 273
Eam1104I CTCTTC 4 cut(s) 501, 656, 1227, 1307
EarI CTCTTC 4 cut(s) 501, 656, 1227, 1307
Eco130I CCWWGG 2 cut(s) 247, 1089
Eco147I AGGCCT 1 cut(s) 622
Eco24I GRGCYC 1 cut(s) 651
Eco47I GGWCC 3 cut(s) 231, 709, 1048
Eco57I CTGAAG 2 cut(s) 51, 864
Eco88I CYCGRG 1 cut(s) 762
EcoO109I RGGNCCY 3 cut(s) 709, 886, 1048
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 6 cut(s) 357, 499, 622, 704, 784, 969
EcoT14I CCWWGG 2 cut(s) 247, 1089
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 2 cut(s) 247, 1089
FaqI GGGAC 1 cut(s) 722
FauNDI CATATG 2 cut(s) 531, 1333
FbaI TGATCA 1 cut(s) 1009
FokI GGATG 5 cut(s) 86, 166, 356, 978, 1283
FriOI GRGCYC 1 cut(s) 651
FspBI CTAG 4 cut(s) 32, 365, 443, 488
GlaI GCGC 2 cut(s) 523, 693
GsuI CTGGAG 6 cut(s) 303, 341, 522, 807, 992, 1332
HaeII RGCGCY 2 cut(s) 525, 695
HaeIII GGCC 4 cut(s) 268, 275, 622, 888
HapII CCGG 1 cut(s) 269
HhaI GCGC 2 cut(s) 524, 694
Hin6I GCGC 2 cut(s) 522, 692
HinP1I GCGC 2 cut(s) 522, 692
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 4 cut(s) 242, 422, 772, 1280
HpaII CCGG 1 cut(s) 269
HphI GGTGA 2 cut(s) 139, 1185
Hpy166II GTNNAC 2 cut(s) 221, 964
Hpy188I TCNGA 6 cut(s) 70, 91, 235, 883, 914, 1177
Hpy188III TCNNGA 9 cut(s) 103, 188, 203, 419, 464, 762, 764, 779, 1311
Hpy8I GTNNAC 2 cut(s) 221, 964
HpyAV CCTTC 2 cut(s) 739, 1061
HpyCH4III ACNGT 3 cut(s) 43, 799, 1323
HpyF10VI GCNNNNNNNGC 6 cut(s) 332, 731, 740, 1078, 1244, 1253
HpyF3I CTNAG 6 cut(s) 60, 138, 329, 1119, 1282, 1327
HspAI GCGC 2 cut(s) 522, 692
KflI GGGWCCC 1 cut(s) 709
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 4 cut(s) 86, 834, 909, 1009
LguI GCTCTTC 2 cut(s) 656, 1227
LmnI GCTCC 4 cut(s) 446, 870, 925, 1232
LweI GCATC 5 cut(s) 64, 334, 393, 576, 952
MaeI CTAG 4 cut(s) 32, 365, 443, 488
MaeIII GTNAC 3 cut(s) 416, 534, 793
MalI GATC 4 cut(s) 88, 836, 911, 1011
MboI GATC 4 cut(s) 86, 834, 909, 1009
MboII GAAGA 9 cut(s) 180, 183, 518, 643, 781, 1045, 1135, 1214, 1294
MfeI CAATTG 2 cut(s) 297, 1251
MhlI GDGCHC 2 cut(s) 96, 651
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 5 cut(s) 174, 297, 455, 1251, 1306
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 236, 1274
Mox20I TGGCCA 1 cut(s) 275
Mph1103I ATGCAT 1 cut(s) 408
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 147, 255
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 6 cut(s) 359, 501, 624, 706, 786, 971
MunI CAATTG 2 cut(s) 297, 1251
MvaI CCWGG 6 cut(s) 359, 501, 624, 706, 786, 971
MwoI GCNNNNNNNGC 6 cut(s) 332, 731, 740, 1078, 1244, 1253
NcoI CCATGG 1 cut(s) 1089
NdeI CATATG 2 cut(s) 531, 1333
NdeII GATC 4 cut(s) 86, 834, 909, 1009
NlaIV GGNNCC 3 cut(s) 710, 711, 862
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 5 cut(s) 410, 431, 584, 1031, 1295
PaeI GCATGC 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 762
PceI AGGCCT 1 cut(s) 622
PciI ACATGT 2 cut(s) 427, 1027
PciSI GCTCTTC 2 cut(s) 656, 1227
PfeI GAWTC 2 cut(s) 422, 772
PfoI TCCNGGA 2 cut(s) 357, 969
PleI GAGTC 2 cut(s) 236, 1274
PpsI GAGTC 2 cut(s) 236, 1274
PpuMI RGGWCCY 2 cut(s) 709, 1048
PscI ACATGT 2 cut(s) 427, 1027
Psp5II RGGWCCY 2 cut(s) 709, 1048
Psp6I CCWGG 6 cut(s) 357, 499, 622, 704, 784, 969
PspGI CCWGG 6 cut(s) 357, 499, 622, 704, 784, 969
PspN4I GGNNCC 3 cut(s) 710, 711, 862
PspPI GGNCC 4 cut(s) 231, 709, 886, 1048
PspPPI RGGWCCY 2 cut(s) 709, 1048
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 5 cut(s) 260, 380, 607, 806, 1153
RsaNI GTAC 5 cut(s) 259, 379, 606, 805, 1152
SapI GCTCTTC 2 cut(s) 656, 1227
SaqAI TTAA 2 cut(s) 147, 255
Sau3AI GATC 4 cut(s) 86, 834, 909, 1009
Sau96I GGNCC 4 cut(s) 231, 709, 886, 1048
SchI GAGTC 2 cut(s) 236, 1274
ScrFI CCNGG 6 cut(s) 359, 501, 624, 706, 786, 971
SduI GDGCHC 2 cut(s) 96, 651
SfaNI GCATC 5 cut(s) 64, 334, 393, 576, 952
SfcI CTRYAG 2 cut(s) 609, 865
Sfr274I CTCGAG 1 cut(s) 762
SinI GGWCC 3 cut(s) 231, 709, 1048
SlaI CTCGAG 1 cut(s) 762
SmlI CTYRAG 1 cut(s) 762
SmoI CTYRAG 1 cut(s) 762
SpeI ACTAGT 1 cut(s) 364
SphI GCATGC 1 cut(s) 410
Sse9I AATT 5 cut(s) 174, 297, 455, 1251, 1306
SseBI AGGCCT 1 cut(s) 622
SsiI CCGC 3 cut(s) 414, 816, 1072
SspMI CTAG 4 cut(s) 32, 365, 443, 488
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 6 cut(s) 357, 499, 622, 704, 784, 969
StyI CCWWGG 2 cut(s) 247, 1089
TaaI ACNGT 3 cut(s) 43, 799, 1323
TaqI TCGA 2 cut(s) 617, 763
TasI AATT 5 cut(s) 174, 297, 455, 1251, 1306
TatI WGTACW 2 cut(s) 258, 378
TauI GCSGC 1 cut(s) 1075
TfiI GAWTC 2 cut(s) 422, 772
Tru1I TTAA 2 cut(s) 147, 255
Tru9I TTAA 2 cut(s) 147, 255
TscAI CASTG 3 cut(s) 48, 1089, 1328
TseFI GTSAC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 4 cut(s) 167, 1038, 1195, 1232
TspRI CASTG 3 cut(s) 48, 1089, 1328
VpaK11BI GGWCC 3 cut(s) 231, 709, 1048
XapI RAATTY 1 cut(s) 174
XceI RCATGY 5 cut(s) 410, 431, 584, 1031, 1295
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 762
XspI CTAG 4 cut(s) 32, 365, 443, 488
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.